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Mendelian Randomization Study of Metabolite Levels with Blood Traits and Complications in Sickle Cell Disease Patients

Yann Ilboudo, Melanie Garrett, Pablo Bartolucci, Clary Clish, Joel N. Hirschhorn, Frédéric Galactéros, Allison Ashley-Koch, Marilyn Telen, Guillaume Lettre

November 26th 2019

SOM SCD MR Results - L-Glutamine and SCD-related disease

Legend: The document presents the genetic associations for metabolites and SCD-related diseases and mendelian randomization analysis results. SNPs (effect alleles) are the lead variants in each gene region identified for their strong association (P < 5.0 × 10−5) with a given metabolite in GWASes of metabolite levels in Europe-ancestry individuals (Shin et al., Nature Genetics, 2014, n=7,824; Long et al., Nature Genetics, 2017, n=1,960). Association effect size with SCD-related diseases in the CSSCD are log odds ratios from logistic regression.

Abbreviations and symbols: *:Variants identified to be pleiotropic by Phenoscanner queries and were excluded from model 2 (Methods); EAF: Effect allele frequency; BETA: Regression effect size or log(odd ratio); P Value: Significance value; N:GWAS sample size; F = F-statistic; I2 = I square; Q=Cochrane Q; nSNP=number of SNPs; CI=confidence interval; Var_ex=variance explained; IVW(re)= Inverse variance weighted (multiplicative random effect).

L-Glutamine all individuals

Painful Crises

Instruments Associations with L-Glutamine & Painful Crises
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Painful Crises (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, 0.59, P = 0.24, N = 1101)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, -0.12, P = 0.31, N = 1101)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.12, P = 0.49, N = 1101)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, -0.021, P = 0.89, N = 1101)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, -0.052, P = 0.7, N = 1101)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, -0.018, P = 0.88, N = 1101)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.01, 0.16, P = 0.78, N = 1101)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.12, P = 0.5, N = 1101)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, 0.29, P = 0.074, N = 1101)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, -0.061, P = 0.71, N = 1101)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.035, 0.24, P = 0.45, N = 1101)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, -0.11, P = 0.42, N = 1101)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.045, 0.093, P = 0.74, N = 1101)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.026, P = 0.88, N = 1101)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.94, 0.25, P = 0.32, N = 1101)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, -0.32, P = 0.049, N = 1101)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.27, 0.013, P = 0.92, N = 1101)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.044, 0.25, P = 0.4, N = 1101)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.13, -0.0023, P = 0.99, N = 1101)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, 0.11, P = 0.36, N = 1101)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, 0.037, P = 0.77, N = 1101)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, -0.12, P = 0.43, N = 1101)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.77, -0.11, P = 0.43, N = 1101)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.042, 0.057, P = 0.85, N = 1101)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, -0.17, P = 0.17, N = 1101)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.19, 0.031, P = 0.84, N = 1101)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, -0.17, P = 0.33, N = 1101)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.025, 0.15, P = 0.69, N = 1101)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.15, P = 0.37, N = 1101)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.22, -0.11, P = 0.45, N = 1101)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, -0.0083, P = 0.94, N = 1101)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, -0.32, P = 0.023, N = 1101)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, -0.12, P = 0.31, N = 1101)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.75, 0.056, P = 0.67, N = 1101)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.079, -0.18, P = 0.42, N = 1101)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.082, P = 0.71, N = 1101)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.09, 0.24, P = 0.25, N = 1101)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.17, -0.031, P = 0.84, N = 1101)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, -0.064, P = 0.59, N = 1101)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, 0.052, P = 0.66, N = 1101)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.095, 0.42, P = 0.04, N = 1101)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.34, -0.091, P = 0.45, N = 1101)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.49, 0.092, P = 0.42, N = 1101)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.82, -0.16, P = 0.29, N = 1101)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.76, -0.14, P = 0.3, N = 1101)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.71, -0.18, P = 0.17, N = 1101)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, -0.0076, P = 0.96, N = 1101)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.037, P = 0.79, N = 1101)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, -0.073, P = 0.54, N = 1101)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.056, -0.11, P = 0.67, N = 1101)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.027, 0.68, P = 0.06, N = 1101)
Results from Univariable Mendelian Randomization of L-Glutamine & Painful Crises - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.21 (-0.46- 0.03) P=0.086 12 30 0.000128 (0- 62.6) NA NA 0.016 P=0.56
MR-Egger 51 -0.27 (-0.61- 0.064) P=0.12 12 30 0.000128 (0- 62.6) 41 0.8 0.016 P=0.56
Weighted median 51 -0.26 (-0.63- 0.11) P=0.17 12 30 0.000128 (0- 62.6) NA NA 0.016 P=0.56
Results from Univariable MRPRESSO of L-Glutamine & Painful Crises - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.21 0.12 -1.72 0.09
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Painful Crises - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.38 (-0.65- -0.12) P=0.0048 16 22 0 (0- 58.4) NA NA -0.021 P=0.58
MR-Egger 27 -0.31 (-0.73- 0.11) P=0.16 16 22 0 (0- 58.4) 17 0.88 -0.021 P=0.58
Weighted median 27 -0.32 (-0.71- 0.084) P=0.12 16 22 0 (0- 58.4) NA NA -0.021 P=0.58
Results from Univariable MRPRESSO of L-Glutamine & Painful Crises - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.38 0.14 -2.82 0.01
beta.exposure Outlier-corrected NA NA NA NA

Cholecystectomy

Instruments Associations with L-Glutamine & Cholecystectomy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Cholecystectomy (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.66, P = 0.25, N = 1084)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, -0.08, P = 0.56, N = 1084)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.07, P = 0.74, N = 1084)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, 0.26, P = 0.15, N = 1084)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, -0.098, P = 0.53, N = 1084)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, 0.042, P = 0.76, N = 1084)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.01, 0.34, P = 0.63, N = 1084)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.52, P = 0.01, N = 1084)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.4, P = 0.033, N = 1084)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, -0.0037, P = 0.98, N = 1084)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.035, 0.2, P = 0.57, N = 1084)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.21, P = 0.2, N = 1084)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.044, -0.24, P = 0.48, N = 1084)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, 0.1, P = 0.61, N = 1084)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.94, -0.22, P = 0.46, N = 1084)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, 0.043, P = 0.82, N = 1084)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.27, -0.21, P = 0.18, N = 1084)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.044, -0.3, P = 0.37, N = 1084)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.13, 0.14, P = 0.5, N = 1084)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, 0.086, P = 0.55, N = 1084)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, 0.25, P = 0.086, N = 1084)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, -0.19, P = 0.27, N = 1084)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, 0.041, P = 0.79, N = 1084)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.042, -0.47, P = 0.16, N = 1084)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.73, -0.12, P = 0.4, N = 1084)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.19, -0.058, P = 0.75, N = 1084)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, -0.16, P = 0.42, N = 1084)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.025, 0.11, P = 0.8, N = 1084)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.12, P = 0.53, N = 1084)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.22, -0.12, P = 0.48, N = 1084)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, 0.12, P = 0.37, N = 1084)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, -0.16, P = 0.33, N = 1084)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, -0.14, P = 0.29, N = 1084)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.75, 0.23, P = 0.13, N = 1084)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.078, 0.12, P = 0.65, N = 1084)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.14, P = 0.59, N = 1084)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.09, -0.32, P = 0.2, N = 1084)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, 0.027, P = 0.88, N = 1084)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, 0.054, P = 0.69, N = 1084)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, -0.36, P = 0.0077, N = 1084)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.095, 0.46, P = 0.059, N = 1084)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.33, 0.092, P = 0.51, N = 1084)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.49, 0.0036, P = 0.98, N = 1084)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.82, -0.1, P = 0.54, N = 1084)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.76, -0.13, P = 0.39, N = 1084)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.71, 0.03, P = 0.84, N = 1084)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.22, P = 0.19, N = 1084)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.23, P = 0.16, N = 1084)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, -0.075, P = 0.58, N = 1084)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.056, -0.23, P = 0.44, N = 1084)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.026, -0.083, P = 0.85, N = 1084)
Results from Univariable Mendelian Randomization of L-Glutamine & Cholecystectomy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.06 (-0.39- 0.27) P=0.72 12 30 0 (0- 98) NA NA -0.051 P=0.13
MR-Egger 51 0.13 (-0.27- 0.54) P=0.52 12 30 0 (0- 98) 53 0.33 -0.051 P=0.13
Weighted median 51 -0.097 (-0.54- 0.35) P=0.67 12 30 0 (0- 98) NA NA -0.051 P=0.13
Results from Univariable MRPRESSO of L-Glutamine & Cholecystectomy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.06 0.17 -0.36 0.72
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Cholecystectomy - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.17 (-0.56- 0.22) P=0.39 16 22 0 (0- 96.8) NA NA -0.041 P=0.38
MR-Egger 27 -0.027 (-0.53- 0.48) P=0.92 16 22 0 (0- 96.8) 27 0.36 -0.041 P=0.38
Weighted median 27 -0.25 (-0.78- 0.28) P=0.36 16 22 0 (0- 96.8) NA NA -0.041 P=0.38
Results from Univariable MRPRESSO of L-Glutamine & Cholecystectomy - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.17 0.2 -0.87 0.39
beta.exposure Outlier-corrected NA NA NA NA

Retinopathy

Instruments Associations with L-Glutamine & Retinopathy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Retinopathy (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.98, 0.8, P = 0.1, N = 566)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.48, 0.096, P = 0.47, N = 566)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, 0.094, P = 0.63, N = 566)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.18, -0.17, P = 0.3, N = 566)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, -0.09, P = 0.54, N = 566)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, -0.13, P = 0.31, N = 566)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.011, 0.31, P = 0.63, N = 566)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.11, 0.41, P = 0.046, N = 566)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.17, 0.23, P = 0.19, N = 566)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.16, -0.24, P = 0.16, N = 566)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.037, -0.36, P = 0.28, N = 566)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.8, 0.081, P = 0.6, N = 566)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.039, 0.16, P = 0.63, N = 566)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, 0.16, P = 0.41, N = 566)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, 0.2, P = 0.48, N = 566)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, 0.088, P = 0.63, N = 566)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.27, -0.4, P = 0.0062, N = 566)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.042, -0.33, P = 0.31, N = 566)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.13, 0.36, P = 0.065, N = 566)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, 0.06, P = 0.66, N = 566)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, -0.2, P = 0.15, N = 566)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.19, 0.026, P = 0.87, N = 566)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.77, -0.2, P = 0.17, N = 566)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.04, -0.068, P = 0.84, N = 566)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, 0.028, P = 0.84, N = 566)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, 0.019, P = 0.91, N = 566)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.9, -0.11, P = 0.58, N = 566)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.027, 0.51, P = 0.2, N = 566)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.12, P = 0.54, N = 566)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, -0.033, P = 0.83, N = 566)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.48, -0.076, P = 0.55, N = 566)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.24, 0.078, P = 0.6, N = 566)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.55, -0.049, P = 0.69, N = 566)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, -0.36, P = 0.012, N = 566)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.073, -0.12, P = 0.62, N = 566)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.28, P = 0.24, N = 566)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.087, -0.38, P = 0.09, N = 566)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.17, 0.29, P = 0.081, N = 566)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.53, 0.074, P = 0.57, N = 566)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.5, -0.076, P = 0.54, N = 566)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.092, -0.36, P = 0.11, N = 566)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.33, -0.09, P = 0.51, N = 566)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.49, 0.14, P = 0.29, N = 566)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.81, -0.16, P = 0.34, N = 566)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.74, -0.035, P = 0.81, N = 566)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.72, 0.089, P = 0.53, N = 566)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, -0.096, P = 0.54, N = 566)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.21, P = 0.16, N = 566)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.44, 0.15, P = 0.25, N = 566)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.057, -0.067, P = 0.8, N = 566)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.033, 0.43, P = 0.24, N = 566)
Results from Univariable Mendelian Randomization of L-Glutamine & Retinopathy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.073 (-0.4- 0.25) P=0.66 12 30 4.6 (0- 97.4) NA NA 0.022 P=0.5
MR-Egger 51 -0.16 (-0.57- 0.25) P=0.45 12 30 4.6 (0- 97.4) 61 0.12 0.022 P=0.5
Weighted median 51 -0.2 (-0.66- 0.26) P=0.4 12 30 4.6 (0- 97.4) NA NA 0.022 P=0.5
Results from Univariable MRPRESSO of L-Glutamine & Retinopathy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.07 0.17 -0.44 0.66
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Retinopathy - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 0.15 (-0.25- 0.54) P=0.46 16 22 5.05 (0- 97.5) NA NA 0.014 P=0.77
MR-Egger 27 0.1 (-0.42- 0.62) P=0.71 16 22 5.05 (0- 97.5) 32 0.16 0.014 P=0.77
Weighted median 27 0.21 (-0.31- 0.72) P=0.43 16 22 5.05 (0- 97.5) NA NA 0.014 P=0.77
Results from Univariable MRPRESSO of L-Glutamine & Retinopathy - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.15 0.2 0.74 0.46
beta.exposure Outlier-corrected NA NA NA NA

Priapism

Instruments Associations with L-Glutamine & Priapism
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Priapism (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.11, P = 0.88, N = 556)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.48, 0.13, P = 0.45, N = 556)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.89, 0.21, P = 0.44, N = 556)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, -0.014, P = 0.95, N = 556)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.77, -0.069, P = 0.72, N = 556)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, 0.098, P = 0.56, N = 556)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.013, 0.073, P = 0.93, N = 556)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.11, 0.031, P = 0.9, N = 556)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.15, -0.17, P = 0.46, N = 556)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, -0.19, P = 0.43, N = 556)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.031, -0.19, P = 0.68, N = 556)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.065, P = 0.76, N = 556)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.044, 0.17, P = 0.69, N = 556)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.27, P = 0.3, N = 556)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, 0.71, P = 0.072, N = 556)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.15, -0.052, P = 0.83, N = 556)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.0017, P = 0.99, N = 556)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.042, -0.39, P = 0.35, N = 556)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, -0.18, P = 0.48, N = 556)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, 0.029, P = 0.87, N = 556)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, 0.035, P = 0.85, N = 556)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, 0.24, P = 0.27, N = 556)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.78, 0.034, P = 0.86, N = 556)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.048, -0.15, P = 0.7, N = 556)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, -0.12, P = 0.51, N = 556)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.2, 0.21, P = 0.33, N = 556)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, -0.19, P = 0.47, N = 556)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.018, 0.3, P = 0.63, N = 556)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.3, P = 0.22, N = 556)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, 0.23, P = 0.24, N = 556)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, 0.1, P = 0.53, N = 556)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.21, P = 0.32, N = 556)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, 0.031, P = 0.85, N = 556)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.74, -0.18, P = 0.34, N = 556)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.08, 0.13, P = 0.68, N = 556)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.24, P = 0.45, N = 556)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.095, -0.08, P = 0.79, N = 556)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, -0.014, P = 0.95, N = 556)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, -0.13, P = 0.47, N = 556)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, 0.12, P = 0.46, N = 556)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.1, -0.18, P = 0.53, N = 556)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.33, -0.13, P = 0.47, N = 556)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.48, -0.17, P = 0.33, N = 556)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.81, -0.3, P = 0.16, N = 556)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, -0.12, P = 0.53, N = 556)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.71, -0.0019, P = 0.99, N = 556)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.056, P = 0.79, N = 556)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.25, -0.19, P = 0.35, N = 556)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, 0.054, P = 0.75, N = 556)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.058, -0.11, P = 0.76, N = 556)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.029, 0.079, P = 0.87, N = 556)
Results from Univariable Mendelian Randomization of L-Glutamine & Priapism - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 0.034 (-0.24- 0.31) P=0.81 12 30 0 (0- 0) NA NA -0.014 P=0.73
MR-Egger 51 0.087 (-0.41- 0.58) P=0.73 12 30 0 (0- 0) 25 1 -0.014 P=0.73
Weighted median 51 0.13 (-0.42- 0.67) P=0.65 12 30 0 (0- 0) NA NA -0.014 P=0.73
Results from Univariable MRPRESSO of L-Glutamine & Priapism - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.03 0.14 0.24 0.81
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Priapism - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 0.091 (-0.25- 0.43) P=0.6 16 22 0 (0- 0) NA NA -0.029 P=0.6
MR-Egger 27 0.19 (-0.41- 0.8) P=0.54 16 22 0 (0- 0) 13 0.97 -0.029 P=0.6
Weighted median 27 0.21 (-0.45- 0.87) P=0.53 16 22 0 (0- 0) NA NA -0.029 P=0.6
Results from Univariable MRPRESSO of L-Glutamine & Priapism - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.09 0.17 0.52 0.61
beta.exposure Outlier-corrected NA NA NA NA

Leg Ulcers

Instruments Associations with L-Glutamine & Leg Ulcers
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Leg Ulcer (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.91, P = 0.11, N = 1155)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, 0.095, P = 0.47, N = 1155)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.088, P = 0.66, N = 1155)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, -0.36, P = 0.034, N = 1155)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, -0.22, P = 0.14, N = 1155)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, 0.098, P = 0.47, N = 1155)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.011, -0.62, P = 0.42, N = 1155)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.02, P = 0.92, N = 1155)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.16, P = 0.39, N = 1155)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, 0.019, P = 0.92, N = 1155)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.035, 0.33, P = 0.31, N = 1155)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, -0.0017, P = 0.99, N = 1155)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.044, 0.58, P = 0.071, N = 1155)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, 0.29, P = 0.13, N = 1155)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.94, -0.12, P = 0.69, N = 1155)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, -0.014, P = 0.94, N = 1155)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.28, -0.15, P = 0.31, N = 1155)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.045, 0.03, P = 0.93, N = 1155)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.13, 0.06, P = 0.77, N = 1155)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, -0.16, P = 0.24, N = 1155)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, -0.089, P = 0.53, N = 1155)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, 0.069, P = 0.68, N = 1155)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.77, -0.26, P = 0.075, N = 1155)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.042, -0.39, P = 0.23, N = 1155)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, 0.0027, P = 0.98, N = 1155)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.19, -0.024, P = 0.89, N = 1155)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, 0.17, P = 0.39, N = 1155)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.026, -0.53, P = 0.23, N = 1155)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.23, P = 0.23, N = 1155)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.22, -0.091, P = 0.56, N = 1155)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, 0.18, P = 0.16, N = 1155)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.0032, P = 0.98, N = 1155)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, 0.07, P = 0.58, N = 1155)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.75, 0.11, P = 0.46, N = 1155)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.077, 0.16, P = 0.53, N = 1155)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.032, P = 0.9, N = 1155)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.089, -0.057, P = 0.81, N = 1155)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.17, -0.14, P = 0.4, N = 1155)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, 0.025, P = 0.85, N = 1155)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, 0.067, P = 0.61, N = 1155)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.098, 0.14, P = 0.56, N = 1155)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.34, 0.051, P = 0.7, N = 1155)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.49, -0.14, P = 0.28, N = 1155)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.82, -0.075, P = 0.64, N = 1155)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.76, -0.063, P = 0.66, N = 1155)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.72, 0.24, P = 0.1, N = 1155)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.059, P = 0.71, N = 1155)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.13, P = 0.4, N = 1155)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, -0.15, P = 0.25, N = 1155)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.056, 0.54, P = 0.064, N = 1155)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.026, 0.26, P = 0.53, N = 1155)
Results from Univariable Mendelian Randomization of L-Glutamine & Leg Ulcers - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 0.091 (-0.19- 0.38) P=0.53 12 30 0.332 (0- 49.2) NA NA 0.0017 P=0.96
MR-Egger 51 0.084 (-0.29- 0.46) P=0.66 12 30 0.332 (0- 49.2) 45 0.64 0.0017 P=0.96
Weighted median 51 -0.034 (-0.47- 0.41) P=0.88 12 30 0.332 (0- 49.2) NA NA 0.0017 P=0.96
Results from Univariable MRPRESSO of L-Glutamine & Leg Ulcers - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.09 0.15 0.62 0.54
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Leg Ulcers - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 0.17 (-0.13- 0.48) P=0.26 16 22 0 (0- 28.3) NA NA -0.0013 P=0.98
MR-Egger 27 0.18 (-0.29- 0.65) P=0.46 16 22 0 (0- 28.3) 18 0.83 -0.0013 P=0.98
Weighted median 27 0.091 (-0.41- 0.59) P=0.72 16 22 0 (0- 28.3) NA NA -0.0013 P=0.98
Results from Univariable MRPRESSO of L-Glutamine & Leg Ulcers - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.17 0.16 1.12 0.27
beta.exposure Outlier-corrected NA NA NA NA

eGFR

Instruments Associations with L-Glutamine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) eGFR (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.12, P = 0.56, N = 859)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, -0.0057, P = 0.91, N = 859)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.022, P = 0.77, N = 859)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, 0.093, P = 0.14, N = 859)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, 0.04, P = 0.47, N = 859)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, -0.021, P = 0.67, N = 859)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.011, -0.093, P = 0.69, N = 859)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.13, P = 0.078, N = 859)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.075, P = 0.25, N = 859)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, -0.057, P = 0.37, N = 859)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.037, -0.18, P = 0.15, N = 859)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.093, P = 0.12, N = 859)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.042, 0.063, P = 0.6, N = 859)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.075, P = 0.3, N = 859)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, 0.089, P = 0.4, N = 859)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, -0.0097, P = 0.89, N = 859)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.28, 0.021, P = 0.7, N = 859)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.041, -0.011, P = 0.93, N = 859)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, -0.014, P = 0.85, N = 859)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, -0.0076, P = 0.88, N = 859)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, -0.036, P = 0.5, N = 859)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, 0.15, P = 0.015, N = 859)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, 0.041, P = 0.46, N = 859)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.039, -0.056, P = 0.66, N = 859)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, -0.12, P = 0.019, N = 859)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, 0.034, P = 0.58, N = 859)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, -0.064, P = 0.37, N = 859)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.025, -0.1, P = 0.51, N = 859)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, -0.071, P = 0.3, N = 859)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.22, -0.027, P = 0.64, N = 859)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, 0.081, P = 0.085, N = 859)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.0063, P = 0.91, N = 859)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, -0.0017, P = 0.97, N = 859)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.76, 0.09, P = 0.11, N = 859)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.075, 0.14, P = 0.12, N = 859)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.031, P = 0.74, N = 859)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.088, 0.061, P = 0.48, N = 859)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.17, -0.065, P = 0.3, N = 859)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, 0.13, P = 0.012, N = 859)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, -0.035, P = 0.46, N = 859)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.095, 0.067, P = 0.42, N = 859)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.34, 0.021, P = 0.67, N = 859)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, -0.025, P = 0.6, N = 859)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.81, -0.02, P = 0.74, N = 859)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, -0.017, P = 0.76, N = 859)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.72, 0.016, P = 0.77, N = 859)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.21, -0.014, P = 0.82, N = 859)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.0071, P = 0.9, N = 859)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, -0.065, P = 0.18, N = 859)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.053, 0.065, P = 0.54, N = 859)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.027, 0.057, P = 0.7, N = 859)
Results from Univariable Mendelian Randomization of L-Glutamine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 0.027 (-0.085- 0.14) P=0.64 12 30 5.42 (0- 57.8) NA NA -0.0089 P=0.44
MR-Egger 51 0.061 (-0.08- 0.2) P=0.4 12 30 5.42 (0- 57.8) 50 0.43 -0.0089 P=0.44
Weighted median 51 0.015 (-0.15- 0.18) P=0.85 12 30 5.42 (0- 57.8) NA NA -0.0089 P=0.44
Results from Univariable MRPRESSO of L-Glutamine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.03 0.06 0.47 0.64
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.026 (-0.18- 0.13) P=0.74 16 22 17 (0- 95.4) NA NA -0.011 P=0.56
MR-Egger 27 0.012 (-0.19- 0.21) P=0.91 16 22 17 (0- 95.4) 33 0.12 -0.011 P=0.56
Weighted median 27 -0.0049 (-0.2- 0.19) P=0.96 16 22 17 (0- 95.4) NA NA -0.011 P=0.56
Results from Univariable MRPRESSO of L-Glutamine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.08 -0.34 0.74
beta.exposure Outlier-corrected NA NA NA NA

Aseptic Necrosis

Instruments Associations with L-Glutamine & Aseptic Necrosis
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Aseptic Necrosis (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, 0.37, P = 0.5, N = 1155)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, -0.098, P = 0.45, N = 1155)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, 0.17, P = 0.39, N = 1155)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, -0.19, P = 0.27, N = 1155)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, 0.096, P = 0.52, N = 1155)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.4, 0.053, P = 0.69, N = 1155)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.011, -0.51, P = 0.4, N = 1155)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.011, P = 0.96, N = 1155)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.12, P = 0.5, N = 1155)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.15, -0.057, P = 0.75, N = 1155)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.035, -0.29, P = 0.39, N = 1155)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, -0.011, P = 0.94, N = 1155)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.044, 0.14, P = 0.65, N = 1155)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.28, P = 0.15, N = 1155)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.94, 0.12, P = 0.67, N = 1155)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.14, -0.3, P = 0.092, N = 1155)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.28, -0.41, P = 0.0053, N = 1155)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.045, -0.2, P = 0.53, N = 1155)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.13, 0.14, P = 0.49, N = 1155)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, -0.13, P = 0.32, N = 1155)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.3, -0.063, P = 0.65, N = 1155)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.18, -0.2, P = 0.23, N = 1155)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.77, -0.022, P = 0.88, N = 1155)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.042, -0.33, P = 0.31, N = 1155)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.72, -0.36, P = 0.0085, N = 1155)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.19, -0.077, P = 0.64, N = 1155)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.87, 0.049, P = 0.8, N = 1155)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.026, -0.65, P = 0.13, N = 1155)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.06, P = 0.74, N = 1155)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.22, -0.067, P = 0.66, N = 1155)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.47, -0.14, P = 0.27, N = 1155)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, -0.21, P = 0.16, N = 1155)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.56, -0.074, P = 0.56, N = 1155)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.75, 0.15, P = 0.31, N = 1155)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.077, -0.12, P = 0.62, N = 1155)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.23, P = 0.34, N = 1155)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.089, 0.19, P = 0.42, N = 1155)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.17, -0.25, P = 0.14, N = 1155)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.54, 0.0018, P = 0.99, N = 1155)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, -0.15, P = 0.23, N = 1155)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.098, 0.17, P = 0.47, N = 1155)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.34, -0.094, P = 0.48, N = 1155)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.49, 0.066, P = 0.6, N = 1155)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.82, -0.38, P = 0.023, N = 1155)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.76, 0.0033, P = 0.98, N = 1155)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.72, -0.042, P = 0.77, N = 1155)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.16, P = 0.32, N = 1155)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.11, P = 0.46, N = 1155)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.43, -0.099, P = 0.45, N = 1155)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.056, -0.098, P = 0.73, N = 1155)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.026, 0.91, P = 0.026, N = 1155)
Results from Univariable Mendelian Randomization of L-Glutamine & Aseptic Necrosis - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.12 (-0.44- 0.19) P=0.44 12 30 2.53 (0- 98.6) NA NA -0.024 P=0.45
MR-Egger 51 -0.031 (-0.43- 0.37) P=0.88 12 30 2.53 (0- 98.6) 55 0.25 -0.024 P=0.45
Weighted median 51 -0.095 (-0.52- 0.33) P=0.67 12 30 2.53 (0- 98.6) NA NA -0.024 P=0.45
Results from Univariable MRPRESSO of L-Glutamine & Aseptic Necrosis - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.12 0.16 -0.77 0.45
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Aseptic Necrosis - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.16 (-0.5- 0.19) P=0.37 16 22 3.47 (0- 65.3) NA NA -0.048 P=0.26
MR-Egger 27 0.012 (-0.45- 0.47) P=0.96 16 22 3.47 (0- 65.3) 22 0.61 -0.048 P=0.26
Weighted median 27 -0.24 (-0.78- 0.29) P=0.37 16 22 3.47 (0- 65.3) NA NA -0.048 P=0.26
Results from Univariable MRPRESSO of L-Glutamine & Aseptic Necrosis - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.16 0.18 -0.9 0.38
beta.exposure Outlier-corrected NA NA NA NA

L-Glutamine individuals age 18 and older

Painful Crises

Instruments Associations with L-Glutamine & Painful Crises
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Painful Crises (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, 0.073, P = 0.92, N = 387)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.47, -0.32, P = 0.061, N = 387)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.89, 0.032, P = 0.9, N = 387)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.16, -0.025, P = 0.91, N = 387)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.75, 0.03, P = 0.88, N = 387)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.38, -0.14, P = 0.42, N = 387)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.01, -0.14, P = 0.87, N = 387)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.13, 0.31, P = 0.22, N = 387)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, 0.37, P = 0.13, N = 387)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.16, -0.34, P = 0.15, N = 387)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.047, 0.23, P = 0.55, N = 387)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, -0.24, P = 0.26, N = 387)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.041, 0.67, P = 0.12, N = 387)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.18, P = 0.49, N = 387)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, 0.27, P = 0.49, N = 387)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.16, -0.34, P = 0.14, N = 387)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.03, P = 0.88, N = 387)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.039, 0.82, P = 0.066, N = 387)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.11, -0.021, P = 0.94, N = 387)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, 0.066, P = 0.72, N = 387)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.32, 0.0033, P = 0.99, N = 387)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.17, -0.055, P = 0.8, N = 387)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, -0.11, P = 0.57, N = 387)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.039, -0.064, P = 0.89, N = 387)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.73, -0.36, P = 0.053, N = 387)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, 0.083, P = 0.71, N = 387)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.89, -0.17, P = 0.51, N = 387)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.018, 0.016, P = 0.98, N = 387)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, -0.12, P = 0.61, N = 387)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, 0.081, P = 0.7, N = 387)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.46, 0.0034, P = 0.98, N = 387)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.22, -0.34, P = 0.098, N = 387)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.52, -0.12, P = 0.47, N = 387)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, -0.16, P = 0.39, N = 387)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.074, -0.21, P = 0.52, N = 387)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.14, P = 0.65, N = 387)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.087, 0.47, P = 0.12, N = 387)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, 0.16, P = 0.46, N = 387)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, -0.24, P = 0.16, N = 387)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.51, 0.17, P = 0.32, N = 387)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.078, 0.5, P = 0.13, N = 387)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.32, 0.19, P = 0.27, N = 387)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, 0.18, P = 0.28, N = 387)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, -0.3, P = 0.15, N = 387)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, -0.0072, P = 0.97, N = 387)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.73, -0.3, P = 0.11, N = 387)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, -0.045, P = 0.83, N = 387)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.058, P = 0.77, N = 387)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, -0.19, P = 0.26, N = 387)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.049, 0.23, P = 0.55, N = 387)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.026, -0.35, P = 0.52, N = 387)
Results from Univariable Mendelian Randomization of L-Glutamine & Painful Crises - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.26 (-0.64- 0.12) P=0.18 12 30 7.65 (0- 50.6) NA NA 0.017 P=0.68
MR-Egger 51 -0.33 (-0.83- 0.17) P=0.2 12 30 7.65 (0- 50.6) 46 0.6 0.017 P=0.68
Weighted median 51 -0.25 (-0.86- 0.35) P=0.42 12 30 7.65 (0- 50.6) NA NA 0.017 P=0.68
Results from Univariable MRPRESSO of L-Glutamine & Painful Crises - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.26 0.19 -1.35 0.18
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Painful Crises - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.56 (-1- -0.082) P=0.022 16 22 0.000116 (0- 97.8) NA NA -0.05 P=0.38
MR-Egger 27 -0.38 (-1- 0.24) P=0.24 16 22 0.000116 (0- 97.8) 25 0.47 -0.05 P=0.38
Weighted median 27 -0.71 (-1.4- -0.049) P=0.035 16 22 0.000116 (0- 97.8) NA NA -0.05 P=0.38
Results from Univariable MRPRESSO of L-Glutamine & Painful Crises - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.56 0.24 -2.3 0.03
beta.exposure Outlier-corrected NA NA NA NA

Cholecystectomy

Instruments Associations with L-Glutamine & Cholecystectomy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Cholecystectomy (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.96, P = 0.17, N = 378)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.46, -0.24, P = 0.15, N = 378)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.16, P = 0.54, N = 378)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.16, 0.54, P = 0.017, N = 378)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.75, -0.17, P = 0.37, N = 378)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.38, 0.0079, P = 0.96, N = 378)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.13, -0.45, P = 0.069, N = 378)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.22, P = 0.34, N = 378)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.16, -0.14, P = 0.55, N = 378)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.046, -0.19, P = 0.62, N = 378)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.084, P = 0.68, N = 378)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.04, -0.076, P = 0.86, N = 378)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.041, P = 0.87, N = 378)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, -0.16, P = 0.67, N = 378)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.16, 0.18, P = 0.43, N = 378)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.19, P = 0.34, N = 378)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.04, 0.039, P = 0.93, N = 378)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, 0.34, P = 0.21, N = 378)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, 0.11, P = 0.54, N = 378)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, 0.18, P = 0.31, N = 378)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.17, -0.33, P = 0.12, N = 378)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, 0.14, P = 0.47, N = 378)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.04, -0.61, P = 0.15, N = 378)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.74, -0.0048, P = 0.98, N = 378)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, 0.18, P = 0.4, N = 378)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.88, -0.05, P = 0.85, N = 378)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.017, -0.083, P = 0.9, N = 378)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.15, 0.28, P = 0.25, N = 378)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, -0.19, P = 0.36, N = 378)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.46, 0.16, P = 0.32, N = 378)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.22, -0.25, P = 0.2, N = 378)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.52, -0.048, P = 0.77, N = 378)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, 0.24, P = 0.19, N = 378)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.074, -0.16, P = 0.61, N = 378)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.57, P = 0.07, N = 378)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.085, -0.51, P = 0.093, N = 378)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, -0.23, P = 0.29, N = 378)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, 0.14, P = 0.41, N = 378)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, -0.16, P = 0.33, N = 378)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.078, 0.79, P = 0.016, N = 378)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.31, 0.062, P = 0.72, N = 378)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, 0.14, P = 0.41, N = 378)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, -0.065, P = 0.75, N = 378)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, -0.18, P = 0.33, N = 378)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.73, 0.03, P = 0.87, N = 378)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.31, P = 0.13, N = 378)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.25, P = 0.23, N = 378)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, -0.0087, P = 0.96, N = 378)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.049, -0.17, P = 0.67, N = 378)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.025, -0.54, P = 0.34, N = 378)
Results from Univariable Mendelian Randomization of L-Glutamine & Cholecystectomy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 50 0.15 (-0.26- 0.56) P=0.47 12 30 5.78 (0- 71.1) NA NA -0.06 P=0.14
MR-Egger 50 0.39 (-0.12- 0.9) P=0.14 12 30 5.78 (0- 71.1) 51 0.34 -0.06 P=0.14
Weighted median 50 -0.039 (-0.64- 0.57) P=0.9 12 30 5.78 (0- 71.1) NA NA -0.06 P=0.14
Results from Univariable MRPRESSO of L-Glutamine & Cholecystectomy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.15 0.21 0.72 0.47
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Cholecystectomy - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.13 (-0.61- 0.36) P=0.61 16 22 0 (0- 77.1) NA NA -0.037 P=0.53
MR-Egger 27 0.0062 (-0.63- 0.64) P=0.98 16 22 0 (0- 77.1) 27 0.36 -0.037 P=0.53
Weighted median 27 -0.12 (-0.81- 0.57) P=0.73 16 22 0 (0- 77.1) NA NA -0.037 P=0.53
Results from Univariable MRPRESSO of L-Glutamine & Cholecystectomy - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.17 0.2 -0.87 0.39
beta.exposure Outlier-corrected NA NA NA NA

Retinopathy

Instruments Associations with L-Glutamine & Retinopathy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Retinopathy (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, 1.1, P = 0.14, N = 268)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.48, 0.29, P = 0.13, N = 268)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.89, -0.25, P = 0.42, N = 268)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.17, -0.53, P = 0.033, N = 268)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.75, -0.23, P = 0.29, N = 268)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.39, -0.076, P = 0.7, N = 268)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.013, 0.23, P = 0.8, N = 268)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.13, 0.64, P = 0.023, N = 268)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.011, P = 0.97, N = 268)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.17, 0.037, P = 0.88, N = 268)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.05, -0.53, P = 0.21, N = 268)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.033, P = 0.88, N = 268)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.037, 0.63, P = 0.21, N = 268)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.065, P = 0.82, N = 268)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, 0.24, P = 0.57, N = 268)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.15, -0.19, P = 0.46, N = 268)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.42, P = 0.06, N = 268)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.041, -0.19, P = 0.7, N = 268)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, 0.45, P = 0.14, N = 268)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.64, 0.011, P = 0.96, N = 268)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.34, -0.27, P = 0.16, N = 268)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.17, -0.21, P = 0.37, N = 268)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, -0.19, P = 0.37, N = 268)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.034, -0.32, P = 0.54, N = 268)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.75, 0.063, P = 0.77, N = 268)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.17, 0.27, P = 0.27, N = 268)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.9, 0.024, P = 0.94, N = 268)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.021, -0.027, P = 0.97, N = 268)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.4, P = 0.14, N = 268)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, -0.15, P = 0.52, N = 268)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.49, -0.2, P = 0.28, N = 268)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.06, P = 0.78, N = 268)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.54, -0.12, P = 0.49, N = 268)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.72, -0.35, P = 0.092, N = 268)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.073, -0.23, P = 0.52, N = 268)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.015, P = 0.97, N = 268)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.093, 0.037, P = 0.91, N = 268)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, 0.26, P = 0.29, N = 268)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, 0.12, P = 0.52, N = 268)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, -0.02, P = 0.91, N = 268)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.073, -0.46, P = 0.22, N = 268)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.33, 0.0037, P = 0.98, N = 268)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, 0.13, P = 0.47, N = 268)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.81, -0.26, P = 0.26, N = 268)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.73, -0.27, P = 0.18, N = 268)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.74, 0.16, P = 0.43, N = 268)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, -0.2, P = 0.39, N = 268)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.072, P = 0.75, N = 268)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, 0.11, P = 0.55, N = 268)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.06, -0.07, P = 0.86, N = 268)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.026, 0.96, P = 0.1, N = 268)
Results from Univariable Mendelian Randomization of L-Glutamine & Retinopathy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.39 (-0.81- 0.027) P=0.067 12 30 0.000154 (0- 74.8) NA NA -0.015 P=0.73
MR-Egger 51 -0.33 (-0.88- 0.21) P=0.24 12 30 0.000154 (0- 74.8) 47 0.56 -0.015 P=0.73
Weighted median 51 -0.42 (-1- 0.19) P=0.18 12 30 0.000154 (0- 74.8) NA NA -0.015 P=0.73
Results from Univariable MRPRESSO of L-Glutamine & Retinopathy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.39 0.21 -1.83 0.07
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Retinopathy - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.066 (-0.49- 0.36) P=0.76 16 22 0 (0- 29.4) NA NA -0.052 P=0.41
MR-Egger 27 0.12 (-0.56- 0.8) P=0.73 16 22 0 (0- 29.4) 16 0.91 -0.052 P=0.41
Weighted median 27 -0.055 (-0.75- 0.64) P=0.88 16 22 0 (0- 29.4) NA NA -0.052 P=0.41
Results from Univariable MRPRESSO of L-Glutamine & Retinopathy - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.15 0.2 0.74 0.46
beta.exposure Outlier-corrected NA NA NA NA

Priapism

Instruments Associations with L-Glutamine & Priapism
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Priapism (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.31, P = 0.76, N = 167)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.48, 0.2, P = 0.44, N = 167)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.89, 0.32, P = 0.44, N = 167)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.13, -0.91, P = 0.014, N = 167)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.76, -0.2, P = 0.49, N = 167)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.39, 0.42, P = 0.11, N = 167)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.13, 0.12, P = 0.77, N = 167)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.45, P = 0.22, N = 167)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.18, -0.11, P = 0.75, N = 167)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.048, -0.053, P = 0.93, N = 167)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.8, 0.095, P = 0.77, N = 167)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.045, 0.56, P = 0.4, N = 167)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.14, -0.66, P = 0.076, N = 167)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.94, 0.95, P = 0.1, N = 167)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.15, -0.18, P = 0.62, N = 167)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.21, -0.74, P = 0.043, N = 167)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.042, 0.11, P = 0.86, N = 167)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.11, 0.053, P = 0.91, N = 167)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.62, 0.095, P = 0.72, N = 167)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, 0.35, P = 0.23, N = 167)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.14, 0.12, P = 0.75, N = 167)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.77, 0.2, P = 0.48, N = 167)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.042, -0.5, P = 0.43, N = 167)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.73, -0.069, P = 0.8, N = 167)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.2, 0.21, P = 0.53, N = 167)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.91, -0.28, P = 0.53, N = 167)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.59, P = 0.11, N = 167)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.2, 0.51, P = 0.092, N = 167)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.45, 0.19, P = 0.41, N = 167)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.11, P = 0.74, N = 167)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.53, 0.015, P = 0.95, N = 167)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.7, -0.66, P = 0.013, N = 167)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.078, 0.16, P = 0.75, N = 167)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.19, P = 0.69, N = 167)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.11, -0.7, P = 0.093, N = 167)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.19, -0.076, P = 0.83, N = 167)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, -0.088, P = 0.74, N = 167)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, 0.54, P = 0.038, N = 167)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.075, -0.54, P = 0.31, N = 167)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.29, 0.1, P = 0.7, N = 167)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, -0.035, P = 0.9, N = 167)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, -0.65, P = 0.043, N = 167)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.73, -0.15, P = 0.57, N = 167)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.72, -0.1, P = 0.71, N = 167)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.21, 0.087, P = 0.79, N = 167)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.23, 0.071, P = 0.83, N = 167)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.46, 0.023, P = 0.93, N = 167)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.045, -0.54, P = 0.39, N = 167)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.027, 0.42, P = 0.58, N = 167)
Results from Univariable Mendelian Randomization of L-Glutamine & Priapism - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 49 -0.29 (-0.93- 0.35) P=0.38 12 28 1.25e-05 (0- 95.1) NA NA -0.062 P=0.33
MR-Egger 49 -0.047 (-0.85- 0.76) P=0.91 12 28 1.25e-05 (0- 95.1) 52 0.3 -0.062 P=0.33
Weighted median 49 -0.1 (-1- 0.82) P=0.83 12 28 1.25e-05 (0- 95.1) NA NA -0.062 P=0.33
Results from Univariable MRPRESSO of L-Glutamine & Priapism - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.29 0.33 -0.89 0.38
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Priapism - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 26 -0.16 (-0.87- 0.56) P=0.67 15 20 0 (0- 84.1) NA NA -0.19 P=0.036
MR-Egger 26 0.51 (-0.44- 1.5) P=0.3 15 20 0 (0- 84.1) 18 0.8 -0.19 P=0.036
Weighted median 26 0.012 (-1- 1) P=0.98 15 20 0 (0- 84.1) NA NA -0.19 P=0.036
Results from Univariable MRPRESSO of L-Glutamine & Priapism - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.13 0.18 0.71 0.49
beta.exposure Outlier-corrected NA NA NA NA

Leg Ulcers

Instruments Associations with L-Glutamine & Leg Ulcers
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Leg Ulcer (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, -0.66, P = 0.33, N = 394)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.46, 0.13, P = 0.41, N = 394)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.18, P = 0.47, N = 394)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.16, -0.47, P = 0.031, N = 394)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.74, -0.26, P = 0.17, N = 394)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.38, 0.2, P = 0.22, N = 394)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.01, -0.94, P = 0.31, N = 394)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.25, P = 0.28, N = 394)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.19, P = 0.39, N = 394)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.16, 0.29, P = 0.21, N = 394)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.046, 0.26, P = 0.49, N = 394)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, -0.28, P = 0.15, N = 394)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.041, 0.058, P = 0.89, N = 394)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, 0.39, P = 0.1, N = 394)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, -0.15, P = 0.69, N = 394)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.16, 0.14, P = 0.51, N = 394)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, 0.059, P = 0.75, N = 394)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.039, 0.22, P = 0.59, N = 394)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, 0.23, P = 0.38, N = 394)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, -0.11, P = 0.53, N = 394)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, 0.073, P = 0.67, N = 394)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.17, -0.078, P = 0.7, N = 394)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, -0.11, P = 0.56, N = 394)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.038, -0.54, P = 0.2, N = 394)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.73, -0.12, P = 0.48, N = 394)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, -0.048, P = 0.82, N = 394)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.89, 0.076, P = 0.76, N = 394)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.019, -1, P = 0.085, N = 394)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, 0.25, P = 0.27, N = 394)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, -0.2, P = 0.3, N = 394)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.46, 0.16, P = 0.3, N = 394)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.22, 0.054, P = 0.77, N = 394)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.53, -0.073, P = 0.64, N = 394)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, 0.0054, P = 0.98, N = 394)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.074, 0.1, P = 0.74, N = 394)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, 0.082, P = 0.78, N = 394)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.088, 0.029, P = 0.92, N = 394)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, -0.49, P = 0.019, N = 394)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, 0.057, P = 0.72, N = 394)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, 0.085, P = 0.6, N = 394)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.077, 0.53, P = 0.091, N = 394)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.32, -0.08, P = 0.63, N = 394)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, -0.25, P = 0.13, N = 394)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, 0.012, P = 0.95, N = 394)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, -0.11, P = 0.53, N = 394)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.73, 0.34, P = 0.057, N = 394)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.062, P = 0.75, N = 394)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.21, P = 0.29, N = 394)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, -0.11, P = 0.49, N = 394)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.048, 0.47, P = 0.2, N = 394)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.025, 0.56, P = 0.29, N = 394)
Results from Univariable Mendelian Randomization of L-Glutamine & Leg Ulcers - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.022 (-0.4- 0.36) P=0.91 12 30 0 (0- 70.1) NA NA -0.045 P=0.24
MR-Egger 51 0.15 (-0.32- 0.63) P=0.53 12 30 0 (0- 70.1) 50 0.42 -0.045 P=0.24
Weighted median 51 -0.3 (-0.81- 0.2) P=0.24 12 30 0 (0- 70.1) NA NA -0.045 P=0.24
Results from Univariable MRPRESSO of L-Glutamine & Leg Ulcers - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.02 0.19 -0.12 0.91
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Leg Ulcers - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 0.054 (-0.4- 0.5) P=0.81 16 22 0.000147 (0- 94) NA NA -0.053 P=0.32
MR-Egger 27 0.24 (-0.34- 0.83) P=0.42 16 22 0.000147 (0- 94) 25 0.48 -0.053 P=0.32
Weighted median 27 -0.29 (-0.93- 0.35) P=0.37 16 22 0.000147 (0- 94) NA NA -0.053 P=0.32
Results from Univariable MRPRESSO of L-Glutamine & Leg Ulcers - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.17 0.16 1.12 0.27
beta.exposure Outlier-corrected NA NA NA NA

eGFR

Instruments Associations with L-Glutamine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) eGFR (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.98, 0.37, P = 0.23, N = 365)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.46, -0.044, P = 0.54, N = 365)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, -0.092, P = 0.43, N = 365)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.16, 0.0081, P = 0.94, N = 365)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.74, 0.059, P = 0.5, N = 365)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.39, -0.087, P = 0.26, N = 365)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.011, -0.44, P = 0.22, N = 365)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, -0.025, P = 0.83, N = 365)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.039, P = 0.71, N = 365)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.17, 0.094, P = 0.32, N = 365)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.049, 0.023, P = 0.89, N = 365)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.1, P = 0.27, N = 365)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.041, 0.088, P = 0.63, N = 365)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.12, 0.08, P = 0.48, N = 365)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, -0.22, P = 0.18, N = 365)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.15, 0.0076, P = 0.94, N = 365)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.12, P = 0.15, N = 365)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.041, 0.15, P = 0.43, N = 365)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, -0.065, P = 0.58, N = 365)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, -0.17, P = 0.032, N = 365)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, 0.061, P = 0.44, N = 365)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.16, 0.18, P = 0.06, N = 365)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, -0.097, P = 0.24, N = 365)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.038, -0.15, P = 0.46, N = 365)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.74, -0.078, P = 0.34, N = 365)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, 0.29, P = 0.0023, N = 365)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.88, -0.011, P = 0.93, N = 365)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.021, -0.45, P = 0.086, N = 365)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.15, -0.022, P = 0.83, N = 365)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, -0.04, P = 0.65, N = 365)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.46, 0.12, P = 0.1, N = 365)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.23, 0.0076, P = 0.93, N = 365)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.54, -0.14, P = 0.061, N = 365)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, 0.023, P = 0.78, N = 365)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.071, 0.27, P = 0.064, N = 365)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.15, P = 0.28, N = 365)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.088, 0.086, P = 0.52, N = 365)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, -0.014, P = 0.89, N = 365)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, 0.048, P = 0.52, N = 365)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, -0.082, P = 0.25, N = 365)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.078, -0.0094, P = 0.95, N = 365)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.32, -0.02, P = 0.79, N = 365)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, -0.019, P = 0.8, N = 365)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, -0.036, P = 0.69, N = 365)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.74, -0.017, P = 0.84, N = 365)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.73, 0.071, P = 0.39, N = 365)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.21, -0.038, P = 0.67, N = 365)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, -0.035, P = 0.69, N = 365)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, 0.058, P = 0.45, N = 365)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.051, 0.11, P = 0.53, N = 365)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.025, 0.047, P = 0.85, N = 365)
Results from Univariable Mendelian Randomization of L-Glutamine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 0.064 (-0.11- 0.24) P=0.48 12 30 3e-04 (0- 83.2) NA NA -0.011 P=0.52
MR-Egger 51 0.11 (-0.11- 0.33) P=0.34 12 30 3e-04 (0- 83.2) 52 0.35 -0.011 P=0.52
Weighted median 51 0.11 (-0.14- 0.37) P=0.39 12 30 3e-04 (0- 83.2) NA NA -0.011 P=0.52
Results from Univariable MRPRESSO of L-Glutamine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.06 0.09 0.71 0.48
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 0.046 (-0.18- 0.27) P=0.69 16 22 3.26 (0- 98.9) NA NA -0.016 P=0.55
MR-Egger 27 0.1 (-0.19- 0.4) P=0.5 16 22 3.26 (0- 98.9) 31 0.2 -0.016 P=0.55
Weighted median 27 0.074 (-0.22- 0.37) P=0.62 16 22 3.26 (0- 98.9) NA NA -0.016 P=0.55
Results from Univariable MRPRESSO of L-Glutamine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.08 -0.34 0.74
beta.exposure Outlier-corrected NA NA NA NA

Aseptic Necrosis

Instruments Associations with L-Glutamine & Aseptic Necrosis
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-glutamine (Shin et al/Long et al) Aseptic Necrosis (CSSCD)
rs524219(G)/1:100821493 CDC14A (0.93, -0.28, P = 4.7e-06, N = 1958) (0.99, 0.95, P = 0.19, N = 394)
rs11166473(T)/1:101010015* GPR88 (0.92, -0.36, P = 9.3e-08, N = 1958) (0.46, -0.1, P = 0.53, N = 394)
rs2811981(A)/1:23950147* MDS2 (0.89, -0.12, P = 3.8e-06, N = 1958) (0.88, 0.27, P = 0.3, N = 394)
rs3127550(A)/1:49431909* AGBL4 (0.49, 0.19, P = 5.7e-06, N = 1958) (0.16, -0.19, P = 0.41, N = 394)
rs7394051(T)/10:122008026* intergenic (0.7, 0.0055, P = 2.2e-06, N = 7372) (0.74, -0.083, P = 0.67, N = 394)
rs10762121(T)/10:68708291 CTNNA3 (0.18, -0.0094, P = 3.1e-05, N = 1768) (0.38, 0.15, P = 0.39, N = 394)
rs11596604(A)/10:87141944* intergenic (0.024, 0.032, P = 2.5e-06, N = 1768) (0.01, -0.31, P = 0.71, N = 394)
rs7078003(T)/10:99359412* HOGA1 (0.17, 0.0087, P = 1.8e-06, N = 7372) (0.12, 0.16, P = 0.52, N = 394)
rs7131407(T)/11:128431418 ETS1 (0.13, 0.0082, P = 3.2e-05, N = 7372) (0.16, -0.072, P = 0.76, N = 394)
rs10431159(A)/11:70967219 SHANK2 (0.65, -0.0047, P = 4.8e-05, N = 7372) (0.16, 0.27, P = 0.25, N = 394)
rs17666239(A)/12:47194757* SLC38A4 (0.078, 0.0092, P = 1.7e-05, N = 7372) (0.046, -0.1, P = 0.79, N = 394)
rs735246(A)/12:52547743 intergenic (0.83, 0.0083, P = 4.8e-05, N = 7372) (0.81, 0.2, P = 0.32, N = 394)
rs774044(T)/12:56837979* TIMELESS (0.055, -0.015, P = 5.6e-07, N = 7372) (0.041, 0.16, P = 0.71, N = 394)
rs7313455(A)/12:56853231* MIP (0.44, 0.0062, P = 2.1e-08, N = 7372) (0.13, -0.0075, P = 0.98, N = 394)
rs2657879(A)/12:56865338* GLS2 (0.82, 0.015, P = 6.1e-18, N = 7372) (0.95, -0.41, P = 0.28, N = 394)
rs12232026(A)/12:56960766* RBMS2 (0.12, -0.0097, P = 4.4e-06, N = 7372) (0.16, -0.16, P = 0.49, N = 394)
rs941893(T)/14:100542061* EVL (0.74, -0.0049, P = 4.1e-05, N = 7372) (0.26, -0.4, P = 0.038, N = 394)
rs144325715(A)/14:95948631 intergenic (0.021, -0.74, P = 5.3e-06, N = 1958) (0.039, 0.12, P = 0.78, N = 394)
rs11636988(A)/15:26822814* GABRB3 (0.57, -0.16, P = 6.5e-06, N = 1958) (0.12, -0.021, P = 0.94, N = 394)
rs1910151(A)/15:38158699* intergenic (0.64, 0.0048, P = 2.2e-05, N = 7372) (0.63, -0.045, P = 0.8, N = 394)
rs35150605(TAAC)/15:88047276 RP11-648K4.2 (0.25, -0.15, P = 6.3e-06, N = 1958) (0.31, -0.3, P = 0.1, N = 394)
rs2560409(C)/16:24099496 PRKCB (0.51, 0.26, P = 1.4e-06, N = 1958) (0.17, -0.31, P = 0.14, N = 394)
rs16977047(T)/16:27924612* GSG1L (0.7, -0.0056, P = 1.1e-06, N = 7372) (0.76, -0.14, P = 0.46, N = 394)
rs12447776(T)/16:84053027 SLC38A8 (0.019, 0.029, P = 4.1e-05, N = 1768) (0.038, -0.049, P = 0.91, N = 394)
rs9912445(A)/17:37202603 LRRC37A11P (0.79, 0.0052, P = 1.7e-05, N = 7372) (0.73, -0.33, P = 0.071, N = 394)
rs8069305(A)/17:53638670 CTD-2033D24.2 (0.68, -0.0047, P = 4.9e-05, N = 7372) (0.18, -0.08, P = 0.72, N = 394)
rs4798682(G)/18:8738265 SOGA2 (0.74, 0.15, P = 5e-06, N = 1958) (0.89, 0.18, P = 0.5, N = 394)
rs73971292(C)/2:161821810 intergenic (0.023, -0.65, P = 5.1e-06, N = 1958) (0.019, -0.89, P = 0.13, N = 394)
rs780093(T)/2:27742603* GCKR (0.4, -0.0058, P = 1.9e-07, N = 7372) (0.14, -0.24, P = 0.32, N = 394)
rs2199619(T)/2:28854958* PLB1 (0.28, 0.0054, P = 5.2e-06, N = 7372) (0.21, 0.12, P = 0.55, N = 394)
rs992580(C)/20:15246472* MACROD2 (0.44, 0.15, P = 6.2e-06, N = 1958) (0.46, -0.18, P = 0.28, N = 394)
rs6137021(A)/20:20375560* RALGAPA2 (0.67, -0.0083, P = 4.5e-05, N = 1768) (0.22, -0.28, P = 0.16, N = 394)
rs2425059(C)/20:33912371* UQCC1 (0.38, 0.15, P = 5.6e-06, N = 1958) (0.53, 0.0086, P = 0.96, N = 394)
rs2948828(A)/3:124811942 SLC12A8 (0.56, 0.0053, P = 2.2e-05, N = 7372) (0.73, 0.023, P = 0.9, N = 394)
rs73168973(T)/3:151691599 intergenic (0.21, -0.23, P = 4e-07, N = 1958) (0.074, -0.17, P = 0.6, N = 394)
rs4699183(A)/4:106444435 AC004066.2 (0.9, -0.27, P = 6.2e-06, N = 1958) (0.92, -0.36, P = 0.25, N = 394)
rs138354882(A)/4:171429817 intergenic (0.028, -0.36, P = 4.5e-06, N = 1958) (0.088, 0.05, P = 0.87, N = 394)
rs7667615(C)/4:182921992* AC108142.1 (0.26, -0.17, P = 6.1e-06, N = 1958) (0.18, -0.37, P = 0.093, N = 394)
rs542300(A)/6:12252237 intergenic (0.51, -0.13, P = 7.2e-06, N = 1958) (0.52, -0.022, P = 0.9, N = 394)
rs9478369(A)/6:153269698* intergenic (0.25, 0.0049, P = 4.1e-05, N = 7372) (0.52, -0.17, P = 0.32, N = 394)
rs71569656(C)/6:22903627 RP1-209A6.1 (0.28, -0.14, P = 8.9e-06, N = 1958) (0.077, 0.51, P = 0.13, N = 394)
rs2748991(T)/6:52596516 intergenic (0.45, -0.007, P = 2.3e-06, N = 5604) (0.32, -0.15, P = 0.38, N = 394)
rs1582256(C)/7:126634804 GRM8 (0.51, -0.18, P = 8.5e-06, N = 1958) (0.5, -0.046, P = 0.79, N = 394)
rs767772939(CT)/7:128350744 FAM71F1 (0.096, 0.26, P = 4.1e-06, N = 1958) (0.8, -0.31, P = 0.13, N = 394)
rs17837468(A)/7:138309274 SVOPL (0.88, 0.0088, P = 3.8e-05, N = 7372) (0.75, 0.06, P = 0.74, N = 394)
rs17152416(T)/7:25765238 AC003090.1 (0.76, 0.0049, P = 3.9e-05, N = 7372) (0.73, -0.016, P = 0.93, N = 394)
rs4722699(T)/7:27456500* intergenic (0.27, -0.0048, P = 3.8e-05, N = 7372) (0.2, 0.21, P = 0.31, N = 394)
rs1799211(T)/7:76240677 UPK3B (0.41, -0.0082, P = 4.2e-06, N = 1768) (0.24, 0.15, P = 0.45, N = 394)
rs9314463(A)/8:2525166 RP11-134O21.1 (0.19, 0.27, P = 9.1e-07, N = 1958) (0.45, -0.29, P = 0.087, N = 394)
rs112508772(A)/9:140016354 snoU13 (0.025, 0.48, P = 7e-07, N = 1958) (0.048, -0.17, P = 0.65, N = 394)
rs7848854(C)/9:7766733* intergenic (0.11, 0.0083, P = 2.4e-05, N = 7372) (0.025, 0.097, P = 0.86, N = 394)
Results from Univariable Mendelian Randomization of L-Glutamine & Aseptic Necrosis - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 51 -0.12 (-0.49- 0.26) P=0.53 12 30 3.44 (0- 41.6) NA NA 0.0033 P=0.93
MR-Egger 51 -0.13 (-0.62- 0.36) P=0.6 12 30 3.44 (0- 41.6) 45 0.62 0.0033 P=0.93
Weighted median 51 -0.14 (-0.73- 0.45) P=0.64 12 30 3.44 (0- 41.6) NA NA 0.0033 P=0.93
Results from Univariable MRPRESSO of L-Glutamine & Aseptic Necrosis - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.12 0.19 -0.62 0.54
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Glutamine & Aseptic Necrosis - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.21 (-0.69- 0.26) P=0.38 16 22 8.21 (0- 64.5) NA NA -0.029 P=0.61
MR-Egger 27 -0.11 (-0.73- 0.51) P=0.72 16 22 8.21 (0- 64.5) 26 0.42 -0.029 P=0.61
Weighted median 27 -0.19 (-0.91- 0.54) P=0.61 16 22 8.21 (0- 64.5) NA NA -0.029 P=0.61
Results from Univariable MRPRESSO of L-Glutamine & Aseptic Necrosis - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.16 0.18 -0.9 0.38
beta.exposure Outlier-corrected NA NA NA NA

SOM SCD MR Results - other metabolites and SCD-related disease

Painful Crises

Pyroglutamine

Instruments Associations with Pyroglutamine & Painful Crises
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Pyroglutamine (Shin et al/Long et al) Painful Crises (CSSCD)
rs7512221(T)/1:220601623* AC096644.1 (0.95, -0.04, P = 5e-06, N = 7354) (0.58, 0.18, P = 0.13, N = 1101)
rs7556040(T)/1:220626220* RP11-410C4.1 (0.95, -0.041, P = 3.4e-06, N = 7354) (0.83, -0.37, P = 0.014, N = 1101)
rs9662967(T)/1:244957186 intergenic (0.7, -0.019, P = 7.4e-07, N = 7354) (0.38, -0.041, P = 0.74, N = 1101)
rs12098127(G)/1:48967002* RP11-329A14.2 (0.18, 0.2, P = 2.6e-06, N = 1956) (0.26, 0.035, P = 0.79, N = 1101)
rs56713017(C)/10:129008570 DOCK1 (0.11, 0.2, P = 5.4e-06, N = 1956) (0.18, 0.053, P = 0.72, N = 1101)
rs11007183(A)/10:28939852* RNU4ATAC6P (0.11, -0.025, P = 9.8e-06, N = 7354) (0.12, -0.056, P = 0.74, N = 1101)
rs2512652(C)/11:131259195 RNU6ATAC12P (0.7, -0.052, P = 5.8e-06, N = 1764) (0.88, -0.061, P = 0.72, N = 1101)
rs11223638(T)/11:133819222 IGSF9B (0.14, -0.25, P = 3.7e-07, N = 1956) (0.33, -0.052, P = 0.68, N = 1101)
rs11613331(A)/12:351467* SLC6A13 (0.55, 0.037, P = 2.2e-25, N = 7354) (0.28, 0.26, P = 0.044, N = 1101)
rs4140962(A)/12:475579* KDM5A (0.41, -0.033, P = 1.2e-19, N = 7354) (0.64, -0.25, P = 0.042, N = 1101)
rs11116175(A)/12:84431621 intergenic (0.16, 0.15, P = 7.1e-06, N = 1956) (0.035, -0.13, P = 0.68, N = 1101)
rs9547116(C)/13:85845121 intergenic (0.45, 0.16, P = 5.2e-06, N = 1956) (0.11, -0.13, P = 0.49, N = 1101)
rs9547119(G)/13:85846010 intergenic (0.45, 0.16, P = 4e-06, N = 1956) (0.11, -0.14, P = 0.48, N = 1101)
rs1600760(A)/14:85104707* intergenic (0.66, -0.022, P = 5.1e-09, N = 7354) (0.43, -0.1, P = 0.38, N = 1101)
rs12905776(T)/15:55170012 intergenic (0.53, 0.11, P = 4e-06, N = 1956) (0.27, 0.081, P = 0.53, N = 1101)
rs2551453(T)/18:53699500 CTD-2008L17.2 (0.26, -0.02, P = 7.3e-06, N = 7354) (0.063, -0.15, P = 0.53, N = 1101)
rs6511763(C)/19:12186857* ZNF844 (0.15, -0.15, P = 8.7e-06, N = 1956) (0.67, -0.13, P = 0.3, N = 1101)
rs1132054(T)/19:49102399* SULT2B1 (0.57, 0.02, P = 2.3e-06, N = 5590) (0.25, -0.00082, P = 1, N = 1101)
rs715(T)/2:211543055* CPS1 (0.71, 0.036, P = 2.5e-16, N = 7354) (0.82, -0.11, P = 0.45, N = 1101)
rs2371015(T)/2:211549609* intergenic (0.34, 0.021, P = 2.2e-08, N = 7354) (0.37, 0.1, P = 0.39, N = 1101)
rs11687290(A)/2:211647954* intergenic (0.73, -0.017, P = 7.4e-06, N = 7354) (0.83, -0.082, P = 0.6, N = 1101)
rs79740025(T)/2:27677763* IFT172 (0.19, 0.2, P = 2.9e-06, N = 1956) (0.024, -0.15, P = 0.7, N = 1101)
rs239019(G)/21:17699639* LINC00478 (0.97, 0.41, P = 9.1e-06, N = 1956) (0.39, -0.08, P = 0.5, N = 1101)
rs80164931(G)/21:17705595 LINC00478 (0.032, 0.43, P = 1.8e-06, N = 1956) (0.014, -0.4, P = 0.39, N = 1101)
rs139049(T)/22:44323597* PNPLA3 (0.41, 0.11, P = 3.9e-06, N = 1956) (0.36, -0.047, P = 0.7, N = 1101)
rs13057977(T)/22:49047339 FAM19A5 (0.15, 0.21, P = 9.9e-06, N = 1956) (0.32, 0.2, P = 0.1, N = 1101)
rs77502708(C)/3:181192900 SOX2-OT (0.026, 0.48, P = 2e-06, N = 1956) (0.099, 0.2, P = 0.32, N = 1101)
rs2159892(T)/3:45383676* intergenic (0.64, -0.02, P = 3.6e-08, N = 7354) (0.6, -0.043, P = 0.71, N = 1101)
rs17279437(A)/3:45814094* SLC6A20 (0.095, 0.059, P = 1.3e-20, N = 7354) (0.013, -0.0023, P = 1, N = 1101)
rs4071(C)/4:101319165* EMCN (0.76, -0.15, P = 8.9e-06, N = 1956) (0.84, 0.091, P = 0.57, N = 1101)
rs17776892(A)/4:137356574 intergenic (0.3, 0.035, P = 4e-06, N = 1764) (0.16, -0.076, P = 0.63, N = 1101)
rs73863916(T)/4:169462085 PALLD (0.021, 0.57, P = 4.5e-06, N = 1956) (0.17, -0.029, P = 0.85, N = 1101)
rs11729049(A)/4:180719585 intergenic (0.63, 0.017, P = 3.7e-06, N = 7354) (0.87, -0.26, P = 0.13, N = 1101)
rs17250948(C)/4:182771958* intergenic (0.4, 0.14, P = 4.5e-06, N = 1956) (0.28, -0.12, P = 0.34, N = 1101)
rs1203809(G)/4:2449545 RP11-503N18.3 (0.38, 0.09, P = 2.1e-06, N = 1956) (0.2, 0.15, P = 0.3, N = 1101)
rs73221060(T)/4:31439776 intergenic (0.051, -0.28, P = 1.8e-06, N = 1956) (0.34, -0.017, P = 0.89, N = 1101)
rs12233879(A)/4:54263624* FIP1L1 (0.14, -0.027, P = 4.5e-07, N = 7354) (0.046, -0.22, P = 0.44, N = 1101)
rs77471043(G)/4:75060135 MTHFD2L (0.01, 0.91, P = 2e-06, N = 1956) (0.16, 0.15, P = 0.33, N = 1101)
rs11727631(T)/4:77576975 SHROOM3 (0.29, 0.017, P = 5.2e-06, N = 7354) (0.47, -0.067, P = 0.57, N = 1101)
rs252984(T)/5:106752337 EFNA5 (0.19, -0.02, P = 7.6e-06, N = 7354) (0.23, 0.17, P = 0.2, N = 1101)
rs1449167(T)/5:119998008* PRR16 (0.64, 0.035, P = 5.4e-06, N = 1764) (0.72, -0.1, P = 0.42, N = 1101)
rs199639973(A)/5:97107215 intergenic (0.052, 0.28, P = 1.3e-06, N = 1956) (0.057, 0.41, P = 0.11, N = 1101)
rs9346808(C)/6:160532652* RP11-288H12.4 (0.23, -0.21, P = 7.5e-06, N = 1956) (0.3, -0.083, P = 0.52, N = 1101)
rs12670725(A)/7:119577292* intergenic (0.81, 0.021, P = 6.2e-06, N = 7354) (0.76, -0.049, P = 0.72, N = 1101)
rs5882739(GT)/7:20429461 ITGB8 (0.24, -0.06, P = 6.2e-06, N = 1956) (0.68, 0.16, P = 0.21, N = 1101)
rs56142483(T)/8:41334474 intergenic (0.088, -0.24, P = 8e-07, N = 1956) (0.17, -0.059, P = 0.7, N = 1101)
Results from Univariable Mendelian Randomization of Pyroglutamine & Painful Crises - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 46 1.1 (0.94- 1.4) P=0.21 11 24 0 (0- 74.8) NA NA 0.014 P=0.62
MR-Egger 46 1.1 (0.84- 1.4) P=0.54 11 24 0 (0- 74.8) 40 0.64 0.014 P=0.62
Weighted median 46 1.1 (0.85- 1.5) P=0.37 11 24 0 (0- 74.8) NA NA 0.014 P=0.62
Results from Univariable MRPRESSO of Pyroglutamine & Painful Crises - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.12 0.1 1.26 0.21
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Pyroglutamine & Painful Crises - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 23 1.2 (0.97- 1.4) P=0.093 14 16 0 (0- 65.2) NA NA -0.033 P=0.45
MR-Egger 23 1.3 (0.94- 1.7) P=0.13 14 16 0 (0- 65.2) 15 0.82 -0.033 P=0.45
Weighted median 23 1.2 (0.84- 1.6) P=0.35 14 16 0 (0- 65.2) NA NA -0.033 P=0.45
Results from Univariable MRPRESSO of Pyroglutamine & Painful Crises - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.16 0.1 1.68 0.11
beta.exposure Outlier-corrected NA NA NA NA

eGFR

cis-Aconitic acid

Instruments Associations with Cis-aconitate & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region cis-Aconitic acid (Shin et al/Long et al) eGFR (CSSCD)
rs35324600(T)/11:22530939 intergenic (0.49, 0.15, P = 3.1e-06, N = 1947) (0.28, 0.076, P = 0.16, N = 859)
rs6539223(G)/12:106007537 intergenic (0.61, -0.1, P = 3.4e-06, N = 1947) (0.89, -0.14, P = 0.065, N = 859)
rs138450783(CA)/14:63994788* PPP2R5E (0.061, -0.33, P = 3.1e-06, N = 1947) (0.061, 0.042, P = 0.67, N = 859)
rs11648258(T)/16:82677875 CDH13 (0.11, 0.16, P = 4.4e-06, N = 1947) (0.039, 0.27, P = 0.03, N = 859)
rs4798545(C)/18:7258907 intergenic (0.63, 0.15, P = 8.2e-07, N = 1947) (0.4, -0.00023, P = 1, N = 859)
rs2302891(T)/2:217064533 XRCC5 (0.24, 0.14, P = 2.3e-06, N = 1947) (0.3, -0.063, P = 0.24, N = 859)
rs77430920(A)/3:1496695 intergenic (0.097, -0.26, P = 6.5e-07, N = 1947) (0.024, -0.37, P = 0.017, N = 859)
rs67411255(A)/3:162259082 intergenic (0.29, 0.18, P = 2.3e-06, N = 1947) (0.45, -0.042, P = 0.37, N = 859)
rs7662761(G)/4:182654376* intergenic (0.85, 0.19, P = 3.8e-06, N = 1947) (0.81, -0.11, P = 0.066, N = 859)
rs7719640(A)/5:3752812* intergenic (0.58, 0.18, P = 4.8e-06, N = 1947) (0.31, -0.023, P = 0.65, N = 859)
rs233947(A)/6:132324555* RP11-69I8.3 (0.18, 0.13, P = 4.5e-06, N = 1947) (0.62, -0.026, P = 0.61, N = 859)
rs55753187(C)/6:132717587 MOXD1 (0.29, 0.16, P = 8.2e-06, N = 1947) (0.4, 0.027, P = 0.58, N = 859)
rs62572814(A)/9:83198655 intergenic (0.072, 0.33, P = 9.4e-06, N = 1947) (0.019, 0.02, P = 0.91, N = 859)
Results from Univariable Mendelian Randomization of Cis-aconitate & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 13 -0.013 (-0.28- 0.26) P=0.92 20 13 29.6 (0- 89.6) NA NA 0.043 P=0.67
MR-Egger 13 -0.26 (-1.4- 0.88) P=0.66 20 13 29.6 (0- 89.6) 22 0.025 0.043 P=0.67
Weighted median 13 -0.13 (-0.41- 0.15) P=0.37 20 13 29.6 (0- 89.6) NA NA 0.043 P=0.67
Results from Univariable MRPRESSO of Cis-aconitate & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.14 -0.09 0.93
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Cis-aconitate & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 9 0.15 (-0.22- 0.52) P=0.43 19 8.9 52.9 (0- 92.3) NA NA 0.018 P=0.92
MR-Egger 9 0.043 (-1.9- 2) P=0.97 19 8.9 52.9 (0- 92.3) 17 0.018 0.018 P=0.92
Weighted median 9 0.024 (-0.33- 0.38) P=0.89 19 8.9 52.9 (0- 92.3) NA NA 0.018 P=0.92
Results from Univariable MRPRESSO of Cis-aconitate & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.15 0.19 0.79 0.45
beta.exposure Outlier-corrected NA NA NA NA

Decanoylcarnitine

Instruments Associations with Decanoylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Decanoylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs2336566(T)/1:12085097* MIIP (0.81, -0.021, P = 3.5e-05, N = 7824) (0.9, -0.049, P = 0.53, N = 859)
rs332765(T)/1:174655782* RABGAP1L (0.36, 0.13, P = 2.4e-06, N = 1950) (0.9, -0.075, P = 0.34, N = 859)
rs1434889(A)/1:213511231* intergenic (0.69, -0.017, P = 5e-05, N = 7824) (0.26, 0.089, P = 0.11, N = 859)
rs7552404(A)/1:76135946* intergenic (0.7, 0.056, P = 3.3e-43, N = 7824) (0.83, -0.12, P = 0.061, N = 859)
rs699683(A)/1:76172512* RP4-682C21.5 (0.068, 0.038, P = 1e-06, N = 7824) (0.024, 0.036, P = 0.82, N = 859)
rs12130832(T)/1:76234294* ACADM (0.71, -0.037, P = 2.8e-19, N = 7824) (0.79, 0.0095, P = 0.87, N = 859)
rs56352044(T)/1:76248706 RABGGTB (0.23, -0.3, P = 9.1e-15, N = 1950) (0.14, 0.15, P = 0.033, N = 859)
rs1144337(T)/1:76278877 MSH4 (0.1, 0.034, P = 1.5e-07, N = 7824) (0.19, -0.061, P = 0.31, N = 859)
rs1796810(T)/1:76403305 intergenic (0.29, 0.034, P = 8.6e-17, N = 7824) (0.32, -0.0091, P = 0.86, N = 859)
rs3762410(A)/1:97189288* PTBP2 (0.3, -0.018, P = 2.8e-05, N = 7824) (0.15, -0.042, P = 0.53, N = 859)
rs12255398(C)/10:122875878 intergenic (0.21, -0.19, P = 3.6e-06, N = 1950) (0.028, -0.04, P = 0.78, N = 859)
rs7894167(C)/10:47556919* intergenic (0.38, 0.17, P = 3.8e-06, N = 1950) (0.52, 0.1, P = 0.037, N = 859)
rs11212307(A)/11:107506922* ELMOD1 (0.95, -0.04, P = 3.7e-05, N = 7824) (0.94, -0.019, P = 0.85, N = 859)
rs7116229(T)/11:113998407* ZBTB16 (0.036, 0.048, P = 1.8e-05, N = 7824) (0.22, -0.036, P = 0.53, N = 859)
rs12787276(T)/11:20313272* intergenic (0.25, 0.02, P = 3.3e-05, N = 7824) (0.071, -0.16, P = 0.081, N = 859)
rs11828392(A)/11:21413243* NELL1 (0.055, -0.045, P = 4.2e-05, N = 7824) (0.012, -0.047, P = 0.83, N = 859)
rs10769307(T)/11:47923603* RP11-793I11.1 (0.86, 0.024, P = 1.5e-05, N = 7824) (0.74, 0.013, P = 0.8, N = 859)
rs7130402(A)/11:48115606* PTPRJ (0.93, 0.034, P = 2.4e-05, N = 7824) (0.91, -0.013, P = 0.88, N = 859)
rs12289557(A)/11:8344945* intergenic (0.43, -0.18, P = 5.3e-06, N = 1950) (0.028, 0.12, P = 0.42, N = 859)
rs11225932(T)/11:97160858 intergenic (0.072, -0.35, P = 8.4e-06, N = 1950) (0.013, 0.25, P = 0.24, N = 859)
rs7973509(A)/12:40354147* SLC2A13 (0.27, -0.018, P = 2.2e-05, N = 7824) (0.097, 0.042, P = 0.61, N = 859)
rs6538742(A)/12:97203085* C12orf55 (0.72, -0.017, P = 4.4e-05, N = 7824) (0.95, 0.044, P = 0.7, N = 859)
rs1557093(T)/13:108378235* FAM155A (0.89, -0.25, P = 2.6e-06, N = 1950) (0.79, 0.096, P = 0.095, N = 859)
rs1220578(A)/13:24730147* SPATA13 (0.078, -0.032, P = 6.9e-06, N = 7824) (0.098, 0.098, P = 0.22, N = 859)
rs9546715(T)/13:85064464* intergenic (0.83, -0.021, P = 3.1e-05, N = 7824) (0.88, -0.01, P = 0.89, N = 859)
rs8003176(T)/14:88760692* KCNK10 (0.77, 0.036, P = 2e-05, N = 7824) (0.9, 0.076, P = 0.34, N = 859)
rs11848217(G)/14:93048314* RIN3 (0.24, -0.18, P = 7.1e-06, N = 1950) (0.33, -0.029, P = 0.58, N = 859)
rs2062541(A)/16:16127235* ABCC1 (0.61, 0.022, P = 2.9e-08, N = 7824) (0.47, 0.048, P = 0.32, N = 859)
rs45512591(C)/16:16147264* ABCC1 (0.28, -0.23, P = 4.7e-08, N = 1950) (0.37, -0.056, P = 0.26, N = 859)
rs12932433(T)/16:7114043* RBFOX1 (0.71, 0.019, P = 6.3e-06, N = 7824) (0.59, 0.004, P = 0.94, N = 859)
rs11657401(A)/17:12762029* ARHGAP44 (0.77, -0.022, P = 4.4e-05, N = 7824) (0.91, -0.097, P = 0.24, N = 859)
rs4889820(A)/17:78089762* GAA (0.99, 0.091, P = 3.5e-05, N = 7824) (0.86, -0.06, P = 0.4, N = 859)
rs8076629(A)/17:8024808* HES7 (0.074, -0.033, P = 2.8e-05, N = 7824) (0.2, -0.02, P = 0.75, N = 859)
rs948386(C)/18:19998810* CTAGE1 (0.58, 0.017, P = 3.3e-05, N = 7824) (0.5, -0.051, P = 0.29, N = 859)
rs3914856(C)/18:2413983 intergenic (0.12, -0.025, P = 1.7e-05, N = 7824) (0.041, 0.21, P = 0.08, N = 859)
rs2156436(T)/18:57457267* intergenic (0.031, 0.14, P = 1.7e-06, N = 7824) (0.23, -0.027, P = 0.64, N = 859)
rs7257107(T)/19:35462829* intergenic (0.61, 0.018, P = 3.6e-05, N = 7824) (0.77, -0.2, P = 0.00062, N = 859)
rs2239510(A)/19:36611284* TBCB (0.33, 0.018, P = 1.9e-05, N = 7824) (0.23, 0.022, P = 0.7, N = 859)
rs2140779(T)/2:121302719* AC073257.2 (0.15, -0.025, P = 9.9e-06, N = 7824) (0.027, 0.11, P = 0.44, N = 859)
rs10191469(G)/2:149419648* EPC2 (0.78, 0.17, P = 8.6e-06, N = 1950) (0.36, -0.013, P = 0.79, N = 859)
rs10203979(C)/2:179022751* intergenic (0.23, 0.18, P = 3.4e-06, N = 1950) (0.36, -0.074, P = 0.14, N = 859)
rs4675009(A)/2:226660503* intergenic (0.82, 0.21, P = 3.6e-06, N = 1950) (0.82, -0.094, P = 0.14, N = 859)
rs2290101(C)/2:33952055* MYADML (0.34, 0.017, P = 4.4e-05, N = 7824) (0.44, -0.11, P = 0.025, N = 859)
rs10495981(T)/2:49883809* intergenic (0.94, -0.034, P = 4.4e-05, N = 7824) (0.99, -0.24, P = 0.25, N = 859)
rs1203869(T)/20:22533223* LINC00261 (0.015, 0.099, P = 2.8e-05, N = 7824) (0.15, -0.056, P = 0.39, N = 859)
rs2298450(T)/21:37623447* DOPEY2 (0.37, -0.017, P = 2.2e-05, N = 7824) (0.55, 0.0059, P = 0.9, N = 859)
rs5755595(T)/22:35518839* CTA-714B7.5 (0.27, 0.24, P = 3.3e-06, N = 1950) (0.055, 0.1, P = 0.35, N = 859)
rs331869(T)/3:255395 CHL1 (0.98, -0.13, P = 2.8e-06, N = 7824) (0.81, -0.061, P = 0.32, N = 859)
rs2700436(T)/3:41573511* ULK4 (0.76, -0.018, P = 4.4e-05, N = 7824) (0.9, -0.0033, P = 0.97, N = 859)
rs6537038(A)/4:142166712* RP11-586L23.1 (0.4, -0.019, P = 4.9e-06, N = 7824) (0.32, -0.012, P = 0.81, N = 859)
rs35055965(T)/4:159193901* RP11-597D13.7 (0.24, -0.23, P = 3.6e-09, N = 1950) (0.16, -0.023, P = 0.72, N = 859)
rs8396(T)/4:159630817* PPID (0.7, 0.053, P = 8.7e-38, N = 7824) (0.65, 0.014, P = 0.78, N = 859)
rs10857319(T)/4:159729794* FNIP2 (0.35, 0.02, P = 1.1e-06, N = 7824) (0.061, -0.071, P = 0.49, N = 859)
rs10003821(T)/4:159877388* C4orf45 (0.36, -0.029, P = 1.6e-12, N = 7824) (0.35, -0.0021, P = 0.97, N = 859)
rs595580(A)/4:24023919* intergenic (0.14, 0.022, P = 4.8e-05, N = 7824) (0.13, 0.11, P = 0.13, N = 859)
rs9790569(T)/4:46734416* COX7B2 (0.18, -0.2, P = 9.3e-06, N = 1950) (0.14, -0.096, P = 0.17, N = 859)
rs6848595(A)/4:66601246* intergenic (0.8, 0.021, P = 2.4e-05, N = 7824) (0.86, -0.015, P = 0.83, N = 859)
rs17157494(A)/5:104409021* CTD-2374C24.1 (0.074, 0.035, P = 2.2e-06, N = 7824) (0.03, -0.16, P = 0.25, N = 859)
rs10036208(T)/5:131571323* P4HA2 (0.34, 0.02, P = 1.5e-06, N = 7824) (0.22, 0.038, P = 0.51, N = 859)
rs1392171(A)/5:135631449* TRPC7 (0.89, 0.024, P = 3.5e-05, N = 7824) (0.87, -0.0074, P = 0.92, N = 859)
rs371846(T)/5:142188049* ARHGAP26 (0.083, -0.03, P = 4.2e-05, N = 7824) (0.25, -0.019, P = 0.73, N = 859)
rs447983(G)/5:155986075* SGCD (0.18, 0.22, P = 9.8e-06, N = 1950) (0.42, -0.0042, P = 0.93, N = 859)
rs2042990(A)/5:66232373* MAST4 (0.039, -0.04, P = 4.8e-05, N = 7824) (0.019, -0.25, P = 0.17, N = 859)
rs13195853(T)/6:165808391* PDE10A (0.65, 0.018, P = 1.9e-05, N = 7824) (0.85, 0.039, P = 0.57, N = 859)
rs4711830(T)/6:45810500* intergenic (0.13, 0.2, P = 6.1e-06, N = 1950) (0.098, -0.058, P = 0.48, N = 859)
rs9352088(C)/6:74987577* RP11-554D15.1 (0.75, -0.038, P = 3.1e-05, N = 7824) (0.56, 0.036, P = 0.46, N = 859)
rs7795715(A)/7:154639804* DPP6 (0.86, -0.025, P = 1.2e-05, N = 7824) (0.82, -0.03, P = 0.64, N = 859)
rs7789113(A)/7:52525621* intergenic (0.37, 0.017, P = 3.1e-05, N = 7824) (0.81, 0.081, P = 0.19, N = 859)
rs7800456(T)/7:81904348* CACNA2D1 (0.29, 0.018, P = 2.5e-05, N = 7824) (0.28, 0.063, P = 0.25, N = 859)
rs6958779(A)/7:92996871 intergenic (0.59, -0.017, P = 4.1e-05, N = 7824) (0.68, -0.016, P = 0.76, N = 859)
rs7819483(A)/8:144351394* GLI4 (0.72, -0.019, P = 7.5e-06, N = 7824) (0.46, -0.013, P = 0.79, N = 859)
rs7462737(T)/8:17615456* MTUS1 (0.17, -0.021, P = 1.9e-05, N = 7824) (0.26, -0.055, P = 0.31, N = 859)
rs3824142(A)/8:1947938* KBTBD11 (0.12, -0.025, P = 4.7e-05, N = 7824) (0.38, 0.006, P = 0.9, N = 859)
rs10504255(A)/8:59398461* CYP7A1 (0.65, 0.017, P = 4.1e-05, N = 7824) (0.93, -0.064, P = 0.49, N = 859)
rs7833895(A)/8:9989417* MSRA (0.93, 0.033, P = 1.5e-05, N = 7824) (0.83, -0.021, P = 0.75, N = 859)
rs9556(T)/9:102732237* STX17 (0.31, -0.019, P = 6.1e-06, N = 7824) (0.27, 0.013, P = 0.81, N = 859)
rs6475272(T)/9:18949249* FAM154A (0.23, -0.024, P = 9.1e-07, N = 7824) (0.067, 0.0017, P = 0.99, N = 859)
rs1556099(A)/9:7164502* KDM4C (0.75, 0.019, P = 1.8e-05, N = 7824) (0.85, 0.1, P = 0.14, N = 859)
Results from Univariable Mendelian Randomization of Decanoylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 78 -0.08 (-0.22- 0.06) P=0.26 7.9 27 9.62 (0- 60.2) NA NA -0.0027 P=0.79
MR-Egger 78 -0.062 (-0.25- 0.13) P=0.52 7.9 27 9.62 (0- 60.2) 80 0.35 -0.0027 P=0.79
Weighted median 78 -0.059 (-0.28- 0.17) P=0.61 7.9 27 9.62 (0- 60.2) NA NA -0.0027 P=0.79
Results from Univariable MRPRESSO of Decanoylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.08 0.07 -1.12 0.27
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Decanoylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 8 -0.34 (-0.74- 0.052) P=0.089 17 6.2 14 (0- 97.6) NA NA 0.0023 P=0.95
MR-Egger 8 -0.35 (-0.92- 0.22) P=0.27 17 6.2 14 (0- 97.6) 7.9 0.25 0.0023 P=0.95
Weighted median 8 -0.45 (-0.92- 0.028) P=0.065 17 6.2 14 (0- 97.6) NA NA 0.0023 P=0.95
Results from Univariable MRPRESSO of Decanoylcarnitinee & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.34 0.2 -1.7 0.13
beta.exposure Outlier-corrected NA NA NA NA

Dodecanoylcarnitine

Instruments Associations with Dodecanoylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Dodecanoylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs2154184(T)/1:111432037* CD53 (0.19, 0.22, P = 4.7e-06, N = 1955) (0.056, -0.032, P = 0.75, N = 859)
rs332765(T)/1:174655782* RABGAP1L (0.36, 0.13, P = 2.4e-06, N = 1955) (0.9, -0.075, P = 0.34, N = 859)
rs1408421(A)/1:17754767* RCC2 (0.36, 0.034, P = 4.8e-05, N = 7824) (0.24, -0.095, P = 0.091, N = 859)
rs736713(T)/1:19689279* CAPZB (0.047, -0.047, P = 2.4e-05, N = 7824) (0.34, 0.015, P = 0.77, N = 859)
rs12087648(T)/1:198488490* ATP6V1G3 (0.87, 0.029, P = 3.8e-05, N = 7824) (0.72, -0.05, P = 0.36, N = 859)
rs12081432(T)/1:224413515 NVL (0.33, -0.12, P = 1.8e-06, N = 1955) (0.32, 0.069, P = 0.19, N = 859)
rs66713312(T)/1:236526499* EDARADD (0.24, 0.13, P = 4.3e-06, N = 1955) (0.42, 0.036, P = 0.46, N = 859)
rs316841(T)/1:242322654* PLD5 (0.38, 0.033, P = 4.9e-05, N = 7824) (0.68, 0.0044, P = 0.93, N = 859)
rs7894167(C)/10:47556919* intergenic (0.38, 0.17, P = 3.8e-06, N = 1955) (0.52, 0.1, P = 0.037, N = 859)
rs12218054(T)/10:49801239* ARHGAP22 (0.22, -0.025, P = 1.4e-05, N = 7824) (0.19, 0.042, P = 0.49, N = 859)
rs7902782(T)/10:8777109* intergenic (0.16, -0.028, P = 3.9e-05, N = 7824) (0.22, -0.07, P = 0.22, N = 859)
rs4937603(T)/11:131022116* intergenic (0.43, 0.13, P = 1.6e-06, N = 1955) (0.3, 0.017, P = 0.75, N = 859)
rs10766637(A)/11:20245859* intergenic (0.53, -0.034, P = 3e-05, N = 7824) (0.21, 0.097, P = 0.11, N = 859)
rs9144(T)/11:87846757* RAB38 (0.59, -0.02, P = 4.7e-05, N = 7824) (0.84, -0.049, P = 0.46, N = 859)
rs10842869(A)/12:27335914* intergenic (0.44, -0.16, P = 2.8e-06, N = 1955) (0.61, -0.036, P = 0.48, N = 859)
rs75605489(C)/12:4342877 intergenic (0.061, -0.3, P = 9.7e-06, N = 1955) (0.16, 0.085, P = 0.19, N = 859)
rs11180195(A)/12:75144208* intergenic (0.011, 0.17, P = 8.6e-06, N = 7824) (0.04, -0.013, P = 0.92, N = 859)
rs2263942(A)/12:82420006* intergenic (0.97, 0.45, P = 1.1e-06, N = 1955) (0.66, 0.035, P = 0.49, N = 859)
rs4900991(C)/14:50618737* SOS2 (0.6, 0.021, P = 9.9e-06, N = 7824) (0.89, 0.04, P = 0.61, N = 859)
rs7162018(A)/15:39365195* RP11-624L4.1 (0.49, -0.022, P = 4.5e-06, N = 7824) (0.21, 0.011, P = 0.85, N = 859)
rs12902624(C)/15:82533236* EFTUD1 (0.88, 0.033, P = 4.3e-06, N = 7824) (0.98, -0.53, P = 0.0052, N = 859)
rs193537(C)/16:16135043* ABCC1 (0.3, -0.24, P = 1.8e-09, N = 1955) (0.66, -0.019, P = 0.71, N = 859)
rs16966673(T)/16:63897984* intergenic (0.026, 0.12, P = 7.9e-06, N = 7824) (0.11, 0.01, P = 0.9, N = 859)
rs10492879(T)/16:8432142* intergenic (0.94, -0.042, P = 1.8e-05, N = 7824) (0.89, -0.071, P = 0.36, N = 859)
rs12928583(A)/16:84961276* RP11-254F19.3 (0.54, 0.024, P = 9e-06, N = 7824) (0.25, 0.02, P = 0.71, N = 859)
rs2546027(T)/19:35454215* ZNF792 (0.54, 0.026, P = 4.1e-05, N = 7824) (0.65, 0.019, P = 0.71, N = 859)
rs1003470(C)/19:36602729* TBCB (0.45, 0.023, P = 1.2e-06, N = 7824) (0.3, 0.043, P = 0.41, N = 859)
rs346052(A)/19:44205082* intergenic (0.094, -0.16, P = 1.1e-06, N = 1955) (0.16, -0.03, P = 0.64, N = 859)
rs1982669(T)/2:120539339* PTPN4 (0.27, 0.02, P = 4.9e-05, N = 7824) (0.28, -0.028, P = 0.6, N = 859)
rs843200(C)/2:156424356 intergenic (0.54, -0.13, P = 8.9e-06, N = 1955) (0.46, 0.056, P = 0.23, N = 859)
rs764741(A)/2:158089779 intergenic (0.19, -0.27, P = 7.5e-06, N = 1955) (0.092, -0.054, P = 0.51, N = 859)
rs10198528(A)/2:159358192* PKP4 (0.58, 0.033, P = 3.1e-05, N = 7824) (0.75, 0.086, P = 0.12, N = 859)
rs1465827(T)/2:212090820* intergenic (0.91, 0.033, P = 3.6e-05, N = 7824) (0.95, -0.047, P = 0.67, N = 859)
rs2970899(T)/2:88421845* FABP1 (0.77, 0.024, P = 2.3e-05, N = 7824) (0.9, -0.073, P = 0.37, N = 859)
rs68088277(T)/20:16262002 KIF16B (0.019, 0.61, P = 7.5e-06, N = 1955) (0.1, 0.082, P = 0.31, N = 859)
rs73110340(G)/20:16262599 KIF16B (0.019, 0.61, P = 6.4e-06, N = 1955) (0.09, -0.0077, P = 0.93, N = 859)
rs4140469(A)/20:7152241 RP4-764O22.2 (0.76, -0.025, P = 9e-06, N = 7824) (0.97, 0.046, P = 0.73, N = 859)
rs2298565(C)/21:45643396* ICOSLG (0.55, 0.02, P = 2.4e-05, N = 7824) (0.68, 0.0037, P = 0.94, N = 859)
rs5755595(T)/22:35518839* CTA-714B7.5 (0.27, 0.24, P = 3.3e-06, N = 1955) (0.055, 0.1, P = 0.35, N = 859)
rs7631807(G)/3:104939338 intergenic (0.76, -0.21, P = 8.8e-06, N = 1955) (0.55, -0.098, P = 0.045, N = 859)
rs9880529(T)/3:176409064* RP11-644C3.1 (0.87, 0.033, P = 3.8e-06, N = 7824) (0.8, 0.035, P = 0.56, N = 859)
rs11927179(A)/3:68816377* FAM19A4 (0.064, -0.042, P = 1e-05, N = 7824) (0.15, -0.0077, P = 0.91, N = 859)
rs9852502(T)/3:88896473* intergenic (0.62, -0.26, P = 7.9e-06, N = 1955) (0.5, 0.02, P = 0.68, N = 859)
rs4352478(A)/4:104212131 RP11-328K4.1 (0.22, 0.024, P = 1.9e-05, N = 7824) (0.52, 0.0096, P = 0.84, N = 859)
rs2162399(T)/4:119822626 SYNPO2 (0.19, 0.044, P = 3.8e-05, N = 7824) (0.36, -0.034, P = 0.5, N = 859)
rs1353305(A)/4:124326814* SPRY1 (0.97, -0.1, P = 4.9e-05, N = 7824) (0.82, 0.045, P = 0.47, N = 859)
rs10002155(A)/4:15916508 intergenic (0.27, -0.18, P = 3.2e-06, N = 1955) (0.32, -0.0014, P = 0.98, N = 859)
rs4690909(C)/4:159629151* ETFDH (0.69, 0.03, P = 1.1e-09, N = 7824) (0.14, 0.012, P = 0.86, N = 859)
rs35189787(T)/4:159802267* FNIP2 (0.21, -0.29, P = 5.3e-10, N = 1955) (0.077, 0.091, P = 0.31, N = 859)
rs62306589(T)/4:56058510 intergenic (0.29, 0.16, P = 4.5e-06, N = 1955) (0.04, 0.093, P = 0.46, N = 859)
rs2535502(T)/4:58195220* intergenic (0.61, -0.021, P = 2.5e-05, N = 7824) (0.66, 0.13, P = 0.009, N = 859)
rs6834160(A)/4:68030397* intergenic (0.98, 0.065, P = 4.6e-05, N = 7824) (0.97, -0.22, P = 0.12, N = 859)
rs2119420(A)/4:80437117* LINC00989 (0.24, 0.024, P = 2e-05, N = 7824) (0.53, -0.068, P = 0.16, N = 859)
rs4836309(T)/5:126454090* intergenic (0.54, -0.022, P = 2.4e-06, N = 7824) (0.5, -0.074, P = 0.13, N = 859)
rs274559(A)/5:131720070* SLC22A5 (0.62, -0.023, P = 1.5e-06, N = 7824) (0.62, 0.0015, P = 0.98, N = 859)
rs447983(G)/5:155986075* SGCD (0.18, 0.22, P = 9.8e-06, N = 1955) (0.42, -0.0042, P = 0.93, N = 859)
rs7728965(T)/5:4231293* intergenic (0.23, 0.024, P = 3.9e-05, N = 7824) (0.28, 0.025, P = 0.64, N = 859)
rs4711830(T)/6:45810500* intergenic (0.13, 0.2, P = 6.1e-06, N = 1955) (0.098, -0.058, P = 0.48, N = 859)
rs1454715(A)/6:68827238* intergenic (0.22, 0.024, P = 2e-05, N = 7824) (0.45, 0.067, P = 0.18, N = 859)
rs943087(T)/6:76754976* IMPG1 (0.17, 0.031, P = 1.4e-06, N = 7824) (0.2, -0.063, P = 0.29, N = 859)
rs3815553(T)/7:104535572* LHFPL3 (0.47, -0.022, P = 4.1e-05, N = 7824) (0.74, 0.045, P = 0.41, N = 859)
rs73231995(T)/7:123940656 RP5-921G16.1 (0.12, -0.22, P = 9.7e-06, N = 1955) (0.012, 0.056, P = 0.8, N = 859)
rs1385234(A)/8:96681968* KB-1047C11.2 (0.32, 0.022, P = 7e-06, N = 7824) (0.39, 0.068, P = 0.18, N = 859)
rs10979297(A)/9:111024683* intergenic (0.67, -0.023, P = 6.9e-06, N = 7824) (0.92, -0.1, P = 0.28, N = 859)
rs10819159(C)/9:129208748 MVB12B (0.18, 0.2, P = 6.6e-06, N = 1955) (0.1, 0.085, P = 0.28, N = 859)
rs3860894(A)/9:84007235* intergenic (0.47, 0.021, P = 4e-05, N = 7824) (0.53, -0.032, P = 0.5, N = 859)
Results from Univariable Mendelian Randomization of Dodecanoylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 66 0.045 (-0.05- 0.14) P=0.35 12 36 0.00418 (0- 74.5) NA NA -0.0066 P=0.5
MR-Egger 66 0.073 (-0.053- 0.2) P=0.26 12 36 0.00418 (0- 74.5) 65 0.43 -0.0066 P=0.5
Weighted median 66 0.067 (-0.072- 0.21) P=0.34 12 36 0.00418 (0- 74.5) NA NA -0.0066 P=0.5
Results from Univariable MRPRESSO of Dodecanoylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.05 0.05 0.93 0.36
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Dodecanoylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 14 0.045 (-0.093- 0.18) P=0.52 20 14 9.75 (0- 64.5) NA NA -0.021 P=0.45
MR-Egger 14 0.11 (-0.11- 0.33) P=0.34 20 14 9.75 (0- 64.5) 12 0.47 -0.021 P=0.45
Weighted median 14 0.022 (-0.18- 0.22) P=0.83 20 14 9.75 (0- 64.5) NA NA -0.021 P=0.45
Results from Univariable MRPRESSO of Dodecanoylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.04 0.07 0.64 0.53
beta.exposure Outlier-corrected NA NA NA NA

L-Acetylcarnitine

Instruments Associations with L-Acetylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Acetylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs1281021(T)/1:11006668* C1orf127 (0.04, 0.048, P = 4.7e-05, N = 7824) (0.42, -0.091, P = 0.062, N = 859)
rs703116(A)/1:158644105* SPTA1 (0.43, -0.019, P = 5e-05, N = 7824) (0.12, -0.078, P = 0.29, N = 859)
rs16852535(A)/1:230881658* CAPN9 (0.32, 0.011, P = 2e-05, N = 7824) (0.54, -0.079, P = 0.11, N = 859)
rs2764907(C)/1:59356872* RP4-794H19.1 (0.086, 0.019, P = 1e-05, N = 7824) (0.015, -0.033, P = 0.87, N = 859)
rs1359850(A)/10:129785336* PTPRE (0.88, 0.015, P = 3e-05, N = 7824) (0.98, 0.11, P = 0.52, N = 859)
rs12268890(T)/10:45803909* OR13A1 (0.11, -0.015, P = 4.6e-05, N = 7824) (0.39, 0.025, P = 0.61, N = 859)
rs2242206(T)/10:61414011* SLC16A9 (0.26, 0.013, P = 1e-06, N = 7824) (0.09, 0.076, P = 0.36, N = 859)
rs1171614(T)/10:61469538* SLC16A9 (0.22, -0.028, P = 3.4e-23, N = 7824) (0.24, -0.02, P = 0.73, N = 859)
rs624016(A)/10:6486611 PRKCQ (0.34, -0.27, P = 8.2e-06, N = 1910) (0.44, -0.021, P = 0.66, N = 859)
rs6583751(C)/10:92838776* intergenic (0.6, -0.012, P = 3.6e-06, N = 7824) (0.49, 0.027, P = 0.58, N = 859)
rs2155639(T)/11:115492672* intergenic (0.34, -0.023, P = 1.3e-05, N = 7824) (0.29, -0.083, P = 0.11, N = 859)
rs493384(A)/11:122114071 RP11-820L6.1 (0.012, -0.091, P = 4.9e-05, N = 7824) (0.073, 0.033, P = 0.72, N = 859)
rs17831757(T)/11:61635200* FADS2 (0.9, -0.015, P = 1.9e-05, N = 7824) (0.95, -0.029, P = 0.78, N = 859)
rs10847395(A)/12:128007217* intergenic (0.48, -0.008, P = 2e-05, N = 7824) (0.85, 0.013, P = 0.84, N = 859)
rs11052231(A)/12:32931618 intergenic (0.046, -0.021, P = 4.4e-05, N = 7824) (0.18, -0.074, P = 0.21, N = 859)
rs2263487(T)/12:47250827* intergenic (0.52, -0.0077, P = 2.8e-05, N = 7824) (0.19, -0.01, P = 0.87, N = 859)
rs10735937(T)/12:67053882* GRIP1 (0.16, -0.015, P = 8e-06, N = 7824) (0.078, 0.2, P = 0.027, N = 859)
rs7332276(T)/13:107886865* FAM155A (0.47, -0.018, P = 3.1e-06, N = 7824) (0.23, 0.097, P = 0.089, N = 859)
rs975508(A)/13:26565586* ATP8A2 (0.55, -0.0081, P = 1.1e-05, N = 7824) (0.59, -0.019, P = 0.7, N = 859)
rs2239265(T)/14:72513858 RGS6 (0.36, -0.79, P = 5.6e-06, N = 1910) (0.48, -0.011, P = 0.82, N = 859)
rs10139470(T)/14:92150089* CATSPERB (0.25, -0.011, P = 3.9e-05, N = 7824) (0.23, 0.012, P = 0.82, N = 859)
rs2121212(T)/15:102073092* intergenic (0.84, -0.013, P = 1.5e-05, N = 7824) (0.63, 0.024, P = 0.64, N = 859)
rs2617228(T)/15:48991807 intergenic (0.76, 0.17, P = 1.2e-06, N = 1910) (0.71, -0.063, P = 0.22, N = 859)
rs8039391(A)/15:97234378* intergenic (0.16, -0.012, P = 1.4e-05, N = 7824) (0.15, -0.0074, P = 0.91, N = 859)
rs197055(A)/16:1131175 SSTR5 (0.17, 0.32, P = 5.2e-06, N = 1910) (0.024, 0.034, P = 0.83, N = 859)
rs9926669(A)/16:24318302 CACNG3 (0.2, 0.011, P = 2.6e-05, N = 7824) (0.45, 0.052, P = 0.28, N = 859)
rs8072316(T)/17:2785024 RAP1GAP2 (0.56, -0.013, P = 1.4e-05, N = 7824) (0.73, -0.0073, P = 0.89, N = 859)
rs60232438(A)/18:12003859 IMPA2 (0.15, 0.32, P = 9.2e-06, N = 1910) (0.17, -0.017, P = 0.79, N = 859)
rs1367865(C)/18:49961055 DCC (0.85, -0.25, P = 9.5e-06, N = 1910) (0.94, -0.073, P = 0.49, N = 859)
rs17077300(A)/18:65087840* intergenic (0.91, -0.014, P = 4.8e-05, N = 7824) (0.95, 0.17, P = 0.14, N = 859)
rs1401926(T)/19:21740932 RP11-678G14.2 (0.47, 0.0078, P = 2e-05, N = 7824) (0.5, 0.061, P = 0.2, N = 859)
rs34810593(G)/19:21825360 RP11-420K14.1 (0.68, -0.58, P = 5.8e-06, N = 1910) (0.33, 0.13, P = 0.011, N = 859)
rs2228070(T)/19:38956839* RYR1 (0.23, 0.012, P = 8.2e-06, N = 7824) (0.087, 0.16, P = 0.06, N = 859)
rs61003828(C)/19:4837150 PLIN3 (0.13, 0.23, P = 7.2e-06, N = 1910) (0.1, -0.074, P = 0.35, N = 859)
rs12971535(C)/19:51069278 LRRC4B (0.86, 0.25, P = 3.1e-06, N = 1910) (0.65, -0.042, P = 0.41, N = 859)
rs12462064(T)/19:53628653* ZNF415 (0.98, 0.064, P = 1.3e-05, N = 7824) (0.95, -0.16, P = 0.14, N = 859)
rs922920(A)/2:111695479* ACOXL (0.52, -0.0078, P = 2.5e-05, N = 7824) (0.32, -0.013, P = 0.8, N = 859)
rs2214270(T)/2:130336029 intergenic (0.45, 0.008, P = 1.3e-05, N = 7824) (0.36, -0.00081, P = 0.99, N = 859)
rs10194807(C)/2:171051041 MYO3B (0.39, 0.16, P = 1.5e-06, N = 1910) (0.62, 0.035, P = 0.48, N = 859)
rs34326128(T)/2:177202822* MTX2 (0.076, -0.37, P = 2.8e-07, N = 1910) (0.015, 0.19, P = 0.34, N = 859)
rs7579950(A)/2:200707606* FTCDNL1 (0.046, -0.065, P = 4.6e-06, N = 7824) (0.067, -0.036, P = 0.71, N = 859)
rs10164712(A)/2:218152840* AC009492.1 (0.21, -0.011, P = 3.7e-05, N = 7824) (0.23, 0.028, P = 0.63, N = 859)
rs11686145(T)/2:233121360* DIS3L2 (0.023, -0.032, P = 2.5e-05, N = 7824) (0.12, -0.062, P = 0.42, N = 859)
rs10210645(A)/2:237872402 intergenic (0.095, 0.17, P = 4.4e-06, N = 1910) (0.22, 0.035, P = 0.53, N = 859)
rs195592(T)/2:53488034* intergenic (0.82, -0.024, P = 4.8e-05, N = 7824) (0.88, -0.053, P = 0.48, N = 859)
rs12615875(A)/2:73081791* intergenic (0.17, -0.012, P = 6.2e-06, N = 7824) (0.53, 0.088, P = 0.061, N = 859)
rs6080491(T)/20:16900236* intergenic (0.17, -0.011, P = 1.8e-05, N = 7824) (0.03, 0.11, P = 0.43, N = 859)
rs2205690(G)/20:38688310 intergenic (0.95, -0.23, P = 2.4e-06, N = 1910) (0.74, -0.083, P = 0.13, N = 859)
rs6126825(A)/20:51999923* TSHZ2 (0.83, -0.011, P = 3.1e-05, N = 7824) (0.76, 0.01, P = 0.86, N = 859)
rs11698080(T)/20:60899182* LAMA5 (0.2, 0.011, P = 4e-05, N = 7824) (0.26, -0.12, P = 0.038, N = 859)
rs4578928(T)/20:7210072 RP4-764O22.2 (0.49, 0.31, P = 5e-06, N = 1910) (0.39, -0.099, P = 0.046, N = 859)
rs3773721(C)/3:122445778* PARP14 (0.099, 0.3, P = 6.6e-06, N = 1910) (0.049, 0.013, P = 0.91, N = 859)
rs1348656(T)/3:144933520* intergenic (0.8, -0.012, P = 6.5e-06, N = 7824) (0.61, 0.03, P = 0.56, N = 859)
rs9289719(T)/3:145983688* intergenic (0.81, 0.012, P = 7.4e-06, N = 7824) (0.41, 0.015, P = 0.76, N = 859)
rs9818568(G)/3:150300051 EIF2A (0.49, -0.13, P = 9.6e-06, N = 1910) (0.4, -0.032, P = 0.51, N = 859)
rs7665423(A)/4:10520600 CLNK (0.014, 0.083, P = 4e-05, N = 7824) (0.04, 0.013, P = 0.92, N = 859)
rs12506472(G)/4:124906097 intergenic (0.22, 0.31, P = 8.7e-06, N = 1910) (0.21, 8e-04, P = 0.99, N = 859)
rs3214037(A)/4:128688803* SLC25A31 (0.014, -0.037, P = 4e-05, N = 7824) (0.023, 0.16, P = 0.32, N = 859)
rs7688971(A)/4:145076356* intergenic (0.016, 0.073, P = 4.1e-05, N = 7824) (0.092, -0.016, P = 0.85, N = 859)
rs12510399(T)/4:157216074* AC108211.1 (0.13, -0.014, P = 3.8e-05, N = 7824) (0.065, 0.081, P = 0.4, N = 859)
rs78509047(G)/4:181215706* intergenic (0.019, 0.87, P = 7.4e-06, N = 1910) (0.14, 0.078, P = 0.27, N = 859)
rs6810706(A)/4:18750217* intergenic (0.55, 0.022, P = 5.4e-06, N = 7824) (0.38, -0.021, P = 0.67, N = 859)
rs2920179(C)/4:4216951* OTOP1 (0.21, 0.011, P = 3.8e-05, N = 7824) (0.077, -0.091, P = 0.31, N = 859)
rs35379510(A)/4:86384715* intergenic (0.029, -0.058, P = 2.2e-05, N = 7824) (0.21, 0.077, P = 0.19, N = 859)
rs17132827(T)/5:110489279* AC010468.3 (0.91, 0.015, P = 2.1e-05, N = 7824) (0.9, -0.058, P = 0.45, N = 859)
rs10037469(T)/5:130451873* intergenic (0.97, 0.03, P = 6e-07, N = 7824) (0.73, 0.05, P = 0.37, N = 859)
rs7356708(C)/5:130593723 CDC42SE2 (0.038, -0.024, P = 4.2e-05, N = 7824) (0.6, -0.031, P = 0.53, N = 859)
rs7716905(A)/5:131324377* ACSL6 (0.97, 0.032, P = 1.5e-07, N = 7824) (0.59, -0.046, P = 0.34, N = 859)
rs7705189(A)/5:131623358* P4HA2 (0.51, 0.01, P = 3.9e-05, N = 7824) (0.72, -0.13, P = 0.015, N = 859)
rs274567(T)/5:131714409* SLC22A5 (0.37, 0.018, P = 2.8e-12, N = 7824) (0.3, 0.049, P = 0.35, N = 859)
rs964922(A)/5:144943893* PRELID2 (0.046, -0.12, P = 2.2e-06, N = 1910) (0.078, 0.054, P = 0.56, N = 859)
rs17080396(A)/5:180005634* CNOT6 (0.94, -0.018, P = 4.4e-05, N = 7824) (0.9, -0.0076, P = 0.93, N = 859)
rs13184373(T)/5:30721169* intergenic (0.15, -0.012, P = 6.4e-06, N = 7824) (0.17, -0.013, P = 0.84, N = 859)
rs7734716(T)/5:53707175* LINC01033 (0.23, 0.023, P = 1.7e-05, N = 7824) (0.2, -0.13, P = 0.026, N = 859)
rs10066016(G)/5:86197530 intergenic (0.72, 0.32, P = 1.7e-06, N = 1910) (0.55, 0.088, P = 0.065, N = 859)
rs9385645(A)/6:133694314* EYA4 (0.84, 0.011, P = 3.3e-05, N = 7824) (0.78, -0.013, P = 0.83, N = 859)
rs6570549(A)/6:143466564* AIG1 (0.72, -0.011, P = 1.1e-05, N = 7824) (0.95, 0.078, P = 0.49, N = 859)
rs662138(C)/6:160564476* SLC22A1 (0.83, 0.014, P = 2.9e-07, N = 7824) (0.95, 0.099, P = 0.35, N = 859)
rs9348257(A)/6:170442668* intergenic (0.26, 0.012, P = 2.7e-06, N = 7824) (0.076, -0.049, P = 0.59, N = 859)
rs1655902(A)/6:29916855* HLA-A (0.82, -0.029, P = 1.3e-06, N = 7824) (0.77, -0.013, P = 0.82, N = 859)
rs1885674(T)/6:71999404* OGFRL1 (0.76, 0.011, P = 3.4e-05, N = 7824) (0.8, 0.13, P = 0.024, N = 859)
rs9447587(T)/6:76720204* IMPG1 (0.15, 0.015, P = 3.6e-05, N = 7824) (0.17, -0.01, P = 0.87, N = 859)
rs12154346(A)/7:33543638* BBS9 (0.9, 0.015, P = 2e-05, N = 7824) (0.83, -0.039, P = 0.55, N = 859)
rs17461606(T)/8:101876369* intergenic (0.16, -0.14, P = 3.6e-06, N = 1910) (0.021, -0.099, P = 0.56, N = 859)
rs17065805(T)/8:1150705* CTD-2281E23.2 (0.94, -0.022, P = 8.2e-06, N = 7824) (0.89, -0.027, P = 0.72, N = 859)
rs16904912(T)/8:134400251* CTC-369M3.1 (0.2, 0.025, P = 1.5e-05, N = 7824) (0.12, -0.0034, P = 0.96, N = 859)
rs4976950(A)/8:143297145* TSNARE1 (0.03, -0.068, P = 3.7e-06, N = 7824) (0.17, 0.013, P = 0.84, N = 859)
rs13257229(T)/8:21028044* intergenic (0.24, 0.021, P = 9.9e-06, N = 7824) (0.064, -0.07, P = 0.47, N = 859)
rs1545087(A)/8:23622382* RP11-175E9.1 (0.22, 0.011, P = 1.8e-05, N = 7824) (0.33, -0.01, P = 0.84, N = 859)
rs16895268(T)/8:98169720* intergenic (0.18, -0.011, P = 2.8e-05, N = 7824) (0.51, 0.0094, P = 0.84, N = 859)
rs10989419(T)/9:103934113* LPPR1 (0.19, 0.013, P = 3.8e-06, N = 7824) (0.1, -0.051, P = 0.54, N = 859)
rs7044502(A)/9:12481665 intergenic (0.23, -0.19, P = 8e-06, N = 1910) (0.27, 0.012, P = 0.82, N = 859)
rs11999015(C)/9:26942716 PLAA (0.076, 0.24, P = 4.6e-07, N = 1910) (0.17, 0.074, P = 0.26, N = 859)
rs1585956(T)/9:31371352* RP11-271O3.1 (0.49, 0.17, P = 7.2e-06, N = 1910) (0.66, 0.017, P = 0.73, N = 859)
rs2039787(T)/9:71875458* intergenic (0.18, 0.011, P = 4.5e-05, N = 7824) (0.032, -0.029, P = 0.83, N = 859)
rs4087415(C)/9:73785818* TRPM3 (0.98, 0.29, P = 8.7e-06, N = 1910) (0.91, 0.072, P = 0.4, N = 859)
Results from Univariable Mendelian Randomization of L-Acetylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 96 -0.0073 (-0.074- 0.06) P=0.83 20 84 8.4 (0- 75.6) NA NA -0.0095 P=0.21
MR-Egger 96 0.019 (-0.059- 0.096) P=0.64 20 84 8.4 (0- 75.6) 95 0.44 -0.0095 P=0.21
Weighted median 96 0.026 (-0.093- 0.15) P=0.67 20 84 8.4 (0- 75.6) NA NA -0.0095 P=0.21
Results from Univariable MRPRESSO of L-Acetylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.03 -0.21 0.83
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Acetylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 26 -0.023 (-0.1- 0.056) P=0.57 66 75 26 (0- 54) NA NA 0.032 P=0.065
MR-Egger 26 -0.1 (-0.22- 0.0076) P=0.08 66 75 26 (0- 54) 24 0.49 0.032 P=0.065
Weighted median 26 0.012 (-0.11- 0.14) P=0.85 66 75 26 (0- 54) NA NA 0.032 P=0.065
Results from Univariable MRPRESSO of L-Acetylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.02 0.04 -0.56 0.58
beta.exposure Outlier-corrected NA NA NA NA

Butyrylcarnitine

Instruments Associations with Butyrylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Butyrylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs71628219(T)/1:176928724 ASTN1 (0.042, 1.1, P = 6.3e-06, N = 1909) (0.013, 0.35, P = 0.086, N = 859)
rs1762470(T)/1:208423850* RP11-2P2.1 (0.55, 0.018, P = 4.7e-07, N = 7824) (0.81, 0.022, P = 0.72, N = 859)
rs7552486(C)/1:232645738 SIPA1L2 (0.94, 1, P = 5e-06, N = 1909) (0.98, -0.043, P = 0.82, N = 859)
rs3120706(T)/1:246714022* TFB2M (0.99, 1.3, P = 1.9e-07, N = 1909) (0.96, -0.008, P = 0.95, N = 859)
rs2201453(A)/1:80040353* intergenic (0.44, 0.015, P = 3.7e-05, N = 7824) (0.67, 0.058, P = 0.26, N = 859)
rs2804412(A)/10:101522647* intergenic (0.12, 0.62, P = 6.9e-07, N = 1909) (0.025, -0.081, P = 0.61, N = 859)
rs2242206(T)/10:61414011* SLC16A9 (0.26, 0.018, P = 3.5e-05, N = 7824) (0.09, 0.076, P = 0.36, N = 859)
rs1171615(T)/10:61469090* SLC16A9 (0.78, 0.035, P = 6.8e-14, N = 7824) (0.76, 0.02, P = 0.73, N = 859)
rs10997368(A)/10:68485405* CTNNA3 (0.42, -0.015, P = 2.9e-05, N = 7824) (0.32, 0.028, P = 0.58, N = 859)
rs2595414(A)/11:6918410 OR2D2 (0.83, -0.37, P = 4.6e-06, N = 1909) (0.55, -0.011, P = 0.82, N = 859)
rs2996029(C)/12:120165182* CIT (0.48, -0.017, P = 4.2e-05, N = 7824) (0.52, -0.1, P = 0.039, N = 859)
rs11611311(A)/12:120677587* PXN (0.86, 0.046, P = 1.6e-15, N = 7824) (0.86, 0.035, P = 0.61, N = 859)
rs2076022(T)/12:120875790* COX6A1 (0.39, -0.05, P = 4.2e-33, N = 7824) (0.46, -0.022, P = 0.64, N = 859)
rs1168067(T)/12:121082469* CABP1 (0.44, -0.081, P = 9.5e-87, N = 7824) (0.21, -0.013, P = 0.83, N = 859)
rs503667(A)/12:121088750* CABP1 (0.3, 0.054, P = 4.7e-36, N = 7824) (0.29, 0.0067, P = 0.9, N = 859)
rs10849776(A)/12:121110235* intergenic (0.37, -0.34, P = 1.3e-41, N = 1909) (0.68, 0.062, P = 0.23, N = 859)
rs10431384(A)/12:121127347* MLEC (0.68, -0.17, P = 1e-200, N = 7824) (0.65, -0.0093, P = 0.85, N = 859)
rs525425(A)/12:121195625* SPPL3 (0.52, -0.11, P = 1e-200, N = 7824) (0.9, -0.0025, P = 0.97, N = 859)
rs73214896(T)/12:121296608* SPPL3 (0.054, 0.21, P = 8.1e-07, N = 1909) (0.022, 0.37, P = 0.022, N = 859)
rs10849820(A)/12:121375558* intergenic (0.91, 0.068, P = 5.1e-24, N = 7824) (0.95, -0.025, P = 0.82, N = 859)
rs12368199(A)/12:121472167* OASL (0.15, 0.12, P = 1.7e-121, N = 7824) (0.11, 0.0095, P = 0.91, N = 859)
rs4556628(T)/12:121477912* OASL (0.3, 0.068, P = 7e-58, N = 7824) (0.35, 0.016, P = 0.76, N = 859)
rs10849843(A)/12:121544500* RP11-216P16.6 (0.043, -0.047, P = 6.6e-07, N = 7824) (0.055, -0.072, P = 0.5, N = 859)
rs7134248(T)/12:121897052* KDM2B (0.5, 0.031, P = 2.6e-05, N = 7824) (0.38, 0.017, P = 0.74, N = 859)
rs2656823(G)/12:127815260* RP11-955H22.3 (0.25, 1.2, P = 3.8e-06, N = 1909) (0.58, -0.026, P = 0.6, N = 859)
rs34875552(G)/12:127931158 intergenic (0.21, -0.51, P = 9.4e-07, N = 1909) (0.074, 0.032, P = 0.72, N = 859)
rs17582686(C)/12:41961745 PDZRN4 (0.12, 0.16, P = 2.8e-06, N = 1909) (0.022, -0.14, P = 0.37, N = 859)
rs1353147(A)/12:44815705* intergenic (0.91, 0.031, P = 4.2e-06, N = 7824) (0.54, -0.053, P = 0.28, N = 859)
rs76038866(G)/12:70398710 RP11-611E13.2 (0.15, -0.15, P = 3.2e-06, N = 1909) (0.019, 0.0063, P = 0.97, N = 859)
rs11843062(T)/13:105985355 intergenic (0.85, 0.021, P = 4.1e-05, N = 7824) (0.93, -0.18, P = 0.047, N = 859)
rs2323477(A)/13:37968251* intergenic (0.56, 0.92, P = 8.4e-06, N = 1909) (0.47, -0.097, P = 0.041, N = 859)
rs2762180(C)/13:43749805 intergenic (0.019, -0.42, P = 4e-06, N = 1909) (0.077, -0.014, P = 0.88, N = 859)
rs12866255(A)/13:46303377 intergenic (0.13, -0.32, P = 4.4e-06, N = 1909) (0.063, -0.092, P = 0.34, N = 859)
rs4982433(T)/14:21703122 HNRNPC (0.046, -0.43, P = 1e-05, N = 1909) (0.016, -0.25, P = 0.2, N = 859)
rs181315(A)/14:48336387 intergenic (0.93, 0.28, P = 6.4e-06, N = 1909) (0.99, -0.27, P = 0.24, N = 859)
rs11620955(A)/14:65491255* FNTB (0.48, -0.016, P = 9.9e-06, N = 7824) (0.29, -0.016, P = 0.76, N = 859)
rs77157541(C)/14:84364103 intergenic (0.085, -0.45, P = 1.7e-06, N = 1909) (0.011, 0.11, P = 0.63, N = 859)
rs58341578(A)/15:102065017 PCSK6 (0.035, 0.62, P = 2.6e-06, N = 1909) (0.052, 0.12, P = 0.28, N = 859)
rs2066705(T)/15:25937004 ATP10A (0.67, -0.38, P = 5.1e-06, N = 1909) (0.2, -0.0033, P = 0.96, N = 859)
rs1827480(T)/15:32018249 OTUD7A (0.69, 0.28, P = 1.1e-06, N = 1909) (0.61, 0.1, P = 0.044, N = 859)
rs8036376(A)/15:39868627 THBS1 (0.87, -0.022, P = 2.6e-05, N = 7824) (0.94, 0.16, P = 0.1, N = 859)
rs2956875(A)/15:76599041* ETFA (0.89, -0.034, P = 1.1e-08, N = 7824) (0.78, -0.024, P = 0.68, N = 859)
rs12903671(G)/15:86784034 AGBL1 (0.61, 0.22, P = 5.8e-06, N = 1909) (0.74, -0.062, P = 0.25, N = 859)
rs294546(A)/15:94847577 MCTP2 (0.55, -0.33, P = 4.6e-06, N = 1909) (0.77, 0.13, P = 0.031, N = 859)
rs7191762(A)/16:23752777* intergenic (0.2, 1.3, P = 6e-06, N = 1909) (0.17, 0.077, P = 0.23, N = 859)
rs2297514(C)/17:26093315 NOS2 (0.41, 0.77, P = 7.8e-06, N = 1909) (0.55, -0.026, P = 0.6, N = 859)
rs2106336(T)/17:49800464* CA10 (0.25, 0.69, P = 8.2e-06, N = 1909) (0.096, 0.02, P = 0.8, N = 859)
rs12970487(G)/18:25809979 intergenic (0.051, -0.41, P = 4.9e-07, N = 1909) (0.083, -0.036, P = 0.68, N = 859)
rs11660811(A)/18:59870563 KIAA1468 (0.12, -0.32, P = 1.5e-06, N = 1909) (0.026, -0.14, P = 0.35, N = 859)
rs12979749(G)/19:17463781* PLVAP (0.055, -0.35, P = 5.6e-06, N = 1909) (0.13, 0.092, P = 0.2, N = 859)
rs3974831(G)/19:54306299* NLRP12 (0.23, -0.4, P = 2.9e-06, N = 1909) (0.12, -0.094, P = 0.2, N = 859)
rs10166038(A)/2:127442846 GYPC (0.68, 0.018, P = 2.1e-05, N = 7824) (0.82, -0.0078, P = 0.9, N = 859)
rs4575678(C)/2:160184773 BAZ2B (0.73, -0.31, P = 3.2e-06, N = 1909) (0.43, 0.044, P = 0.35, N = 859)
rs355896(A)/2:165635908* COBLL1 (0.43, -0.014, P = 4.5e-05, N = 7824) (0.8, -0.0099, P = 0.87, N = 859)
rs35467545(A)/2:228119461 COL4A3 (0.093, -0.42, P = 7.7e-06, N = 1909) (0.038, 0.038, P = 0.77, N = 859)
rs4663190(T)/2:236174661 intergenic (0.26, 0.29, P = 7.3e-06, N = 1909) (0.7, -0.028, P = 0.61, N = 859)
rs150411636(T)/2:26280681 RAB10 (0.012, 0.67, P = 3.5e-06, N = 1909) (0.038, -0.022, P = 0.86, N = 859)
rs2122033(C)/2:6366461* intergenic (0.72, -0.19, P = 8.7e-06, N = 1909) (0.92, -0.094, P = 0.29, N = 859)
rs17697184(T)/2:70844368* ADD2 (0.017, 0.12, P = 4.2e-05, N = 7824) (0.03, -0.093, P = 0.5, N = 859)
rs17680254(C)/2:7405775* RP11-557L19.1 (0.17, -0.34, P = 7.8e-06, N = 1909) (0.033, 0.27, P = 0.043, N = 859)
rs6043520(C)/20:15738249 MACROD2 (0.38, 1, P = 7e-06, N = 1909) (0.66, 0.036, P = 0.49, N = 859)
rs79183297(C)/20:25726841 intergenic (0.05, 0.62, P = 9.9e-06, N = 1909) (0.044, 0.09, P = 0.44, N = 859)
rs564621(A)/21:31541034 CLDN17 (0.9, -0.34, P = 9.7e-07, N = 1909) (0.85, -0.063, P = 0.35, N = 859)
rs9613176(T)/22:26804801 intergenic (0.26, 1.3, P = 6.2e-06, N = 1909) (0.06, 0.03, P = 0.77, N = 859)
rs73479548(C)/22:48657745 intergenic (0.025, 0.27, P = 8.5e-07, N = 1909) (0.063, -0.094, P = 0.34, N = 859)
rs136770(G)/22:49800204* intergenic (0.53, -0.39, P = 1.4e-06, N = 1909) (0.46, -0.021, P = 0.66, N = 859)
rs6808851(T)/3:20505047 intergenic (0.88, 0.025, P = 2.3e-05, N = 7824) (0.74, 0.029, P = 0.6, N = 859)
rs11915197(T)/3:20781663 intergenic (0.59, -0.42, P = 6.6e-06, N = 1909) (0.52, -0.0098, P = 0.84, N = 859)
rs1515458(G)/3:21913964 ZNF385D (0.28, 0.44, P = 5.4e-06, N = 1909) (0.21, -0.028, P = 0.63, N = 859)
rs11923037(C)/3:22487778 intergenic (0.056, 0.73, P = 2.8e-06, N = 1909) (0.025, 0.062, P = 0.69, N = 859)
rs10510534(A)/3:23048172* intergenic (0.062, 0.95, P = 8.8e-06, N = 1909) (0.032, 0.034, P = 0.8, N = 859)
rs6445312(T)/3:63055960 LINC00698 (0.84, -0.5, P = 9.6e-06, N = 1909) (0.76, -0.0016, P = 0.98, N = 859)
rs12646870(C)/4:146764120 ZNF827 (0.52, 0.65, P = 9.2e-06, N = 1909) (0.59, -0.0069, P = 0.89, N = 859)
rs3103197(T)/4:42344469 RP11-63A11.1 (0.57, -0.017, P = 3.8e-05, N = 7824) (0.77, -0.0059, P = 0.92, N = 859)
rs72862822(C)/4:73516604* intergenic (0.069, 0.62, P = 3.5e-07, N = 1909) (0.22, -0.01, P = 0.86, N = 859)
rs71607390(G)/4:77775612 AC104687.1 (0.034, -0.37, P = 8.1e-06, N = 1909) (0.015, -0.21, P = 0.3, N = 859)
rs76135410(A)/5:111566364 EPB41L4A (0.097, -0.4, P = 9.5e-06, N = 1909) (0.077, 0.041, P = 0.66, N = 859)
rs10477531(T)/5:114714807* intergenic (0.47, 0.24, P = 5e-06, N = 1909) (0.34, -0.034, P = 0.51, N = 859)
rs12521097(A)/5:131575338* P4HA2 (0.47, -0.018, P = 3.6e-07, N = 7824) (0.43, 0.094, P = 0.054, N = 859)
rs7719428(C)/5:132180919* RNA5SP192 (0.33, -0.018, P = 1.6e-05, N = 7824) (0.47, -0.12, P = 0.017, N = 859)
rs1392378(T)/5:165821645* intergenic (0.77, 0.54, P = 8.2e-06, N = 1909) (0.38, 0.017, P = 0.73, N = 859)
rs9313646(G)/5:173155866 AC008674.1 (0.32, -0.4, P = 4e-06, N = 1909) (0.29, 0.034, P = 0.53, N = 859)
rs4458729(T)/6:104189269* intergenic (0.54, 0.78, P = 4.8e-06, N = 1909) (0.35, 0.032, P = 0.53, N = 859)
rs58492300(G)/6:110684097 METTL24 (0.33, -0.41, P = 3.6e-07, N = 1909) (0.34, -0.028, P = 0.58, N = 859)
rs1288153(A)/6:113293306 RNU6-1163P (0.98, -0.18, P = 7.9e-06, N = 1909) (0.85, 0.01, P = 0.88, N = 859)
rs10224061(C)/7:19852619* AC004543.2 (0.15, -0.15, P = 9.5e-06, N = 1909) (0.39, 0.018, P = 0.72, N = 859)
rs6462769(T)/7:37577324* intergenic (0.71, 0.019, P = 5.7e-06, N = 7824) (0.64, -0.0053, P = 0.92, N = 859)
rs9638994(C)/7:45895291* intergenic (0.31, 0.18, P = 1.4e-06, N = 1909) (0.56, -0.076, P = 0.13, N = 859)
rs2178045(A)/7:70231649 AUTS2 (0.099, -0.05, P = 3.7e-05, N = 7824) (0.1, -0.17, P = 0.031, N = 859)
rs695195(A)/8:8633528 RP11-211C9.1 (0.16, -0.21, P = 4.4e-06, N = 1909) (0.44, -0.032, P = 0.52, N = 859)
rs13289885(G)/9:108138947 SLC44A1 (0.029, 0.93, P = 9.5e-06, N = 1909) (0.32, 0.055, P = 0.29, N = 859)
rs62566532(G)/9:6743110 KDM4C (0.17, -0.19, P = 7.1e-07, N = 1909) (0.1, 0.022, P = 0.78, N = 859)
Results from Univariable Mendelian Randomization of Butyrylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 92 0.003 (-0.025- 0.031) P=0.84 187 561 0.0128 (0- 48.5) NA NA 0.0042 P=0.65
MR-Egger 92 -0.0036 (-0.045- 0.037) P=0.86 187 561 0.0128 (0- 48.5) 85 0.63 0.0042 P=0.65
Weighted median 92 0.023 (-0.019- 0.066) P=0.28 187 561 0.0128 (0- 48.5) NA NA 0.0042 P=0.65
Results from Univariable MRPRESSO of Butyrylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.01 0.21 0.84
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Butyrylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 47 0.018 (-0.021- 0.057) P=0.37 190 298 0.00282 (0- 54.4) NA NA -0.016 P=0.4
MR-Egger 47 0.045 (-0.03- 0.12) P=0.25 190 298 0.00282 (0- 54.4) 39 0.72 -0.016 P=0.4
Weighted median 47 0.025 (-0.038- 0.089) P=0.43 190 298 0.00282 (0- 54.4) NA NA -0.016 P=0.4
Results from Univariable MRPRESSO of Butyrylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.02 0.02 0.89 0.38
beta.exposure Outlier-corrected NA NA NA NA

Tiglylcarnitine

Instruments Associations with Tiglylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Tiglylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs115886573(A)/1:182541031 RNASEL (0.26, -0.15, P = 4.7e-06, N = 1956) (0.17, 0.036, P = 0.57, N = 859)
rs149513885(A)/10:36506292 intergenic (0.13, 0.17, P = 3.3e-06, N = 1956) (0.015, -0.18, P = 0.38, N = 859)
rs10904923(G)/10:6807941* intergenic (0.092, -0.23, P = 1.9e-06, N = 1956) (0.031, -0.075, P = 0.59, N = 859)
rs10998884(G)/10:71389673 C10orf35 (0.17, 0.27, P = 9.8e-06, N = 1956) (0.066, 0.15, P = 0.1, N = 859)
rs12814936(A)/12:30164763 intergenic (0.17, 0.17, P = 1.3e-06, N = 1956) (0.031, 0.13, P = 0.35, N = 859)
rs11856930(G)/15:34028778* RYR3 (0.46, -0.14, P = 9.2e-06, N = 1956) (0.38, 0.085, P = 0.089, N = 859)
rs8041137(G)/15:89570030 intergenic (0.63, 0.19, P = 1.9e-06, N = 1956) (0.93, 0.039, P = 0.67, N = 859)
rs924135(T)/16:16123459* ABCC1 (0.6, -0.15, P = 1.1e-06, N = 1956) (0.47, 0.06, P = 0.21, N = 859)
rs62097702(A)/18:77148177 intergenic (0.27, -0.2, P = 1.3e-06, N = 1956) (0.099, -0.099, P = 0.22, N = 859)
rs139567843(A)/19:45019167 CEACAM20 (0.013, -0.77, P = 9.1e-06, N = 1956) (0.012, 0.31, P = 0.17, N = 859)
rs56285383(T)/2:173602 intergenic (0.3, 0.11, P = 9.2e-06, N = 1956) (0.058, -0.11, P = 0.28, N = 859)
rs6717796(C)/2:18337669* KCNS3 (0.35, 0.18, P = 1.3e-06, N = 1956) (0.73, -0.091, P = 0.09, N = 859)
rs3092505(G)/20:44812412 CDH22 (0.27, 0.13, P = 1e-05, N = 1956) (0.23, -0.012, P = 0.84, N = 859)
rs73049045(G)/3:30034421 RBMS3 (0.086, 0.38, P = 4.6e-07, N = 1956) (0.016, -0.13, P = 0.52, N = 859)
rs62252141(C)/3:32514805 CMTM7 (0.093, 0.29, P = 2.7e-06, N = 1956) (0.015, 0.35, P = 0.068, N = 859)
rs1372425(C)/3:77317940 ROBO2 (0.11, -0.28, P = 3.5e-06, N = 1956) (0.14, 0.12, P = 0.093, N = 859)
rs372660405(AAAAC)/4:101436992 EMCN (0.083, 0.29, P = 2.6e-06, N = 1956) (0.024, 0.19, P = 0.24, N = 859)
rs28703837(C)/4:32085737 RP11-734I18.1 (0.11, -0.28, P = 4.1e-07, N = 1956) (0.22, 0.018, P = 0.75, N = 859)
rs112580372(A)/4:89315397* HERC6 (0.21, 0.21, P = 3.5e-06, N = 1956) (0.12, -0.07, P = 0.35, N = 859)
rs10043226(C)/5:107243859 FBXL17 (0.076, -0.33, P = 5.1e-06, N = 1956) (0.15, 0.035, P = 0.61, N = 859)
rs2338821(G)/5:141509433* NDFIP1 (0.52, -0.13, P = 3.6e-06, N = 1956) (0.78, -0.027, P = 0.65, N = 859)
rs115960372(T)/5:1518494 LPCAT1 (0.097, 0.29, P = 5.3e-06, N = 1956) (0.017, -0.34, P = 0.066, N = 859)
rs1874167(T)/5:62424015 intergenic (0.63, 0.21, P = 6.9e-06, N = 1956) (0.35, 0.029, P = 0.56, N = 859)
rs9370853(A)/6:15991331* RP11-401E14.2 (0.12, 0.23, P = 3.9e-06, N = 1956) (0.085, -0.074, P = 0.39, N = 859)
rs4367541(C)/8:13041969 DLC1 (0.56, 0.12, P = 4.8e-06, N = 1956) (0.51, -0.024, P = 0.61, N = 859)
rs1689897(A)/8:16847582 FGF20 (0.23, 0.18, P = 4.7e-06, N = 1956) (0.3, 0.035, P = 0.5, N = 859)
rs4875308(A)/8:4060604* CSMD1 (0.49, 0.17, P = 2.7e-06, N = 1956) (0.18, -0.063, P = 0.31, N = 859)
rs3824419(C)/9:1056728* DMRT2 (0.34, 0.16, P = 9.4e-07, N = 1956) (0.16, -0.028, P = 0.66, N = 859)
rs7021791(A)/9:10928554* intergenic (0.6, -0.12, P = 1e-06, N = 1956) (0.79, -0.022, P = 0.7, N = 859)
Results from Univariable Mendelian Randomization of Tiglylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 29 -0.11 (-0.25- 0.022) P=0.1 25 36 0.00319 (0- 58.6) NA NA -0.0091 P=0.82
MR-Egger 29 -0.07 (-0.47- 0.33) P=0.73 25 36 0.00319 (0- 58.6) 30 0.31 -0.0091 P=0.82
Weighted median 29 -0.11 (-0.31- 0.088) P=0.28 25 36 0.00319 (0- 58.6) NA NA -0.0091 P=0.82
Results from Univariable MRPRESSO of Tiglylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.11 0.07 -1.64 0.11
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Tiglylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 19 -0.033 (-0.21- 0.14) P=0.71 26 25 0.000966 (0- 76.4) NA NA 0.028 P=0.61
MR-Egger 19 -0.15 (-0.63- 0.33) P=0.55 26 25 0.000966 (0- 76.4) 22 0.2 0.028 P=0.61
Weighted median 19 -0.083 (-0.32- 0.15) P=0.49 26 25 0.000966 (0- 76.4) NA NA 0.028 P=0.61
Results from Univariable MRPRESSO of Tiglylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.09 -0.37 0.72
beta.exposure Outlier-corrected NA NA NA NA

Glutarylcarnitine

Instruments Associations with Glutarylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Glutarylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs7533102(T)/1:107828950 NTNG1 (0.38, 0.011, P = 1.6e-05, N = 7824) (0.19, 0.077, P = 0.2, N = 859)
rs2798691(T)/1:113579103* RP11-31F15.2 (0.32, 0.022, P = 2.4e-05, N = 7824) (0.29, 0.0043, P = 0.93, N = 859)
rs7531982(A)/1:154596122* ADAR (0.51, 0.011, P = 9.1e-06, N = 7824) (0.86, 0.11, P = 0.096, N = 859)
rs10918734(A)/1:167625495* RCSD1 (0.95, 0.024, P = 6e-06, N = 7824) (0.8, 0.0092, P = 0.88, N = 859)
rs17015767(C)/1:206951398 intergenic (0.24, -0.011, P = 3.9e-05, N = 7824) (0.13, -0.016, P = 0.83, N = 859)
rs13375749(T)/1:53695882* MAGOH (0.78, 0.03, P = 2.8e-28, N = 7824) (0.79, 0.048, P = 0.42, N = 859)
rs12035926(A)/1:53752134 LRP8 (0.61, -0.011, P = 1.7e-05, N = 7824) (0.91, -0.0038, P = 0.96, N = 859)
rs1193243(T)/1:7524776 CAMTA1 (0.4, 0.011, P = 4.3e-05, N = 7824) (0.58, -0.011, P = 0.82, N = 859)
rs12745456(T)/1:76108055* RP4-595K12.2 (0.73, 0.012, P = 7.3e-06, N = 7824) (0.94, 0.018, P = 0.87, N = 859)
rs11189859(A)/10:100657705* HPSE2 (0.89, 0.033, P = 1.5e-05, N = 7824) (0.95, -0.017, P = 0.88, N = 859)
rs7923727(A)/10:11165615 CELF2 (0.53, -0.012, P = 2.1e-06, N = 7824) (0.63, -0.071, P = 0.15, N = 859)
rs11017260(T)/10:129113943* DOCK1 (0.94, -0.022, P = 1.8e-05, N = 7824) (0.98, -0.13, P = 0.5, N = 859)
rs573812(T)/10:25631649 GPR158 (0.81, 0.012, P = 6.1e-06, N = 7824) (0.52, 0.032, P = 0.51, N = 859)
rs7071006(A)/10:98382165* PIK3AP1 (0.81, 0.014, P = 3.7e-05, N = 7824) (0.47, 0.016, P = 0.75, N = 859)
rs10895511(T)/11:103552188* RP11-563P16.1 (0.95, -0.053, P = 2.9e-06, N = 7824) (0.53, -0.019, P = 0.7, N = 859)
rs7118414(C)/11:117811548 intergenic (0.39, -0.011, P = 3.1e-05, N = 7824) (0.33, -0.048, P = 0.36, N = 859)
rs4964150(T)/12:106017797* intergenic (0.22, -0.011, P = 3e-05, N = 7824) (0.21, -0.038, P = 0.52, N = 859)
rs7970615(T)/12:130637090 FZD10-AS1 (0.23, 0.026, P = 1.9e-05, N = 7824) (0.25, -0.073, P = 0.19, N = 859)
rs716955(A)/12:75593472* KCNC2 (0.81, 0.013, P = 3.3e-05, N = 7824) (0.91, 0.096, P = 0.25, N = 859)
rs3809197(T)/12:96883418* C12orf55 (0.013, 0.11, P = 3.2e-07, N = 7824) (0.13, -0.076, P = 0.29, N = 859)
rs9573172(A)/13:73953498 intergenic (0.95, -0.023, P = 9.5e-06, N = 7824) (0.99, 0.054, P = 0.79, N = 859)
rs11625658(A)/14:100723577* YY1 (0.25, -0.013, P = 9e-07, N = 7824) (0.23, 0.0019, P = 0.97, N = 859)
rs1059264(T)/14:100769163 SLC25A29 (0.33, -0.015, P = 5.6e-08, N = 7824) (0.17, 0.042, P = 0.51, N = 859)
rs12050391(A)/14:32771346 intergenic (0.22, -0.011, P = 1.9e-05, N = 7824) (0.16, 0.013, P = 0.84, N = 859)
rs2291449(A)/15:76579234* ETFA (0.91, -0.028, P = 1.4e-10, N = 7824) (0.99, 0.1, P = 0.62, N = 859)
rs4636879(T)/15:76630303* ISL2 (0.19, 0.013, P = 5e-06, N = 7824) (0.73, 0.036, P = 0.51, N = 859)
rs246234(C)/16:16128742* ABCC1 (0.3, -0.02, P = 2.6e-14, N = 7824) (0.5, -0.052, P = 0.28, N = 859)
rs8054670(T)/16:16132134* ABCC1 (0.78, 0.015, P = 8e-09, N = 7824) (0.63, 0.047, P = 0.33, N = 859)
rs8056893(A)/16:68304392* SLC7A6 (0.73, -0.03, P = 2.2e-30, N = 7824) (0.95, 0.11, P = 0.33, N = 859)
rs11644360(T)/16:68327089* SLC7A6 (0.54, -0.018, P = 1.1e-12, N = 7824) (0.11, 0.012, P = 0.88, N = 859)
rs933457(A)/17:36897107 PCGF2 (0.95, -0.025, P = 4.1e-05, N = 7824) (0.71, 0.03, P = 0.57, N = 859)
rs766990(A)/18:6917171* ARHGAP28 (0.2, 0.014, P = 2.8e-05, N = 7824) (0.23, 0.033, P = 0.57, N = 859)
rs10411504(A)/19:12753644* MAN2B1 (0.93, -0.023, P = 2.8e-05, N = 7824) (0.93, 0.081, P = 0.4, N = 859)
rs4804736(A)/19:12936881 RTBDN (0.16, -0.018, P = 6.8e-06, N = 7824) (0.029, -0.12, P = 0.4, N = 859)
rs8012(A)/19:13010520 GCDH (0.44, 0.037, P = 6.4e-45, N = 7824) (0.19, 0.15, P = 0.014, N = 859)
rs11085835(T)/19:13332010 CACNA1A (0.2, 0.015, P = 1e-08, N = 7824) (0.13, 0.074, P = 0.29, N = 859)
rs7252894(T)/19:43719940 CEACAMP10 (0.032, -0.085, P = 2e-05, N = 7824) (0.8, -0.0037, P = 0.95, N = 859)
rs7255066(T)/19:45146103 PVR (0.74, -0.011, P = 4.3e-05, N = 7824) (0.19, 0.031, P = 0.61, N = 859)
rs3770471(T)/2:15770775 DDX1 (0.15, -0.015, P = 1.5e-05, N = 7824) (0.42, 0.034, P = 0.49, N = 859)
rs715(T)/2:211543055* CPS1 (0.72, 0.021, P = 3.5e-16, N = 7824) (0.81, -0.061, P = 0.33, N = 859)
rs4673545(A)/2:211565535* intergenic (0.73, 0.014, P = 4.5e-08, N = 7824) (0.79, 0.0017, P = 0.98, N = 859)
rs11687290(A)/2:211647954* intergenic (0.73, -0.012, P = 7e-06, N = 7824) (0.83, 0.02, P = 0.75, N = 859)
rs6745507(C)/2:213577416 AC079610.1 (0.62, -0.012, P = 3.7e-06, N = 7824) (0.45, -0.044, P = 0.36, N = 859)
rs12621141(A)/2:99927112 C2orf15 (0.42, -0.013, P = 9.2e-07, N = 7824) (0.24, 0.0089, P = 0.88, N = 859)
rs12625248(T)/20:55393483* intergenic (0.83, -0.03, P = 7.2e-06, N = 7824) (0.89, -0.18, P = 0.021, N = 859)
rs8134964(A)/21:23291223* intergenic (0.32, 0.013, P = 4.3e-05, N = 7824) (0.28, 0.028, P = 0.61, N = 859)
rs2838535(T)/21:45681579* DNMT3L (0.081, 0.037, P = 4.3e-05, N = 7824) (0.16, -0.044, P = 0.5, N = 859)
rs7364173(T)/22:50681029* TUBGCP6 (0.59, 0.011, P = 4.7e-05, N = 7824) (0.6, -0.057, P = 0.26, N = 859)
rs12635778(A)/3:103451972 intergenic (0.97, 0.033, P = 3.1e-05, N = 7824) (0.9, 0.077, P = 0.34, N = 859)
rs9844004(C)/3:170958358 TNIK (0.24, -0.016, P = 4.3e-05, N = 7824) (0.41, -0.03, P = 0.54, N = 859)
rs1524307(T)/3:22673600 intergenic (0.48, 0.025, P = 2e-06, N = 7824) (0.54, 0.056, P = 0.25, N = 859)
rs7633111(T)/3:30840808 GADL1 (0.58, -0.013, P = 1.9e-06, N = 7824) (0.2, -0.025, P = 0.68, N = 859)
rs9311834(A)/3:62030849* PTPRG (0.89, -0.015, P = 3.8e-05, N = 7824) (0.76, -0.013, P = 0.82, N = 859)
rs6853898(A)/4:142171146 RP11-586L23.1 (0.96, -0.025, P = 4.3e-05, N = 7824) (0.79, 0.034, P = 0.56, N = 859)
rs2070630(C)/4:159644494* PPID (0.29, -0.014, P = 1.4e-07, N = 7824) (0.29, -0.047, P = 0.38, N = 859)
rs17223240(A)/4:159924295* C4orf45 (0.091, -0.019, P = 2e-05, N = 7824) (0.012, 0.1, P = 0.66, N = 859)
rs13112606(A)/4:17468047* QDPR (0.78, -0.011, P = 3.5e-05, N = 7824) (0.82, 0.0036, P = 0.96, N = 859)
rs3911612(A)/4:180493646* intergenic (0.78, 0.011, P = 2.9e-05, N = 7824) (0.35, -0.054, P = 0.28, N = 859)
rs17608635(A)/4:45079676* intergenic (0.23, -0.013, P = 5e-07, N = 7824) (0.18, 0.017, P = 0.78, N = 859)
rs16837061(A)/4:5383127 STK32B (0.8, 0.012, P = 9.8e-06, N = 7824) (0.45, -0.09, P = 0.07, N = 859)
rs10003471(T)/4:92200866* CCSER1 (0.11, 0.02, P = 5.7e-07, N = 7824) (0.029, -0.091, P = 0.52, N = 859)
rs1981524(T)/5:131756506* C5orf56 (0.2, 0.016, P = 3.1e-09, N = 7824) (0.2, -0.13, P = 0.033, N = 859)
rs12521174(A)/5:156141605* SGCD (0.95, 0.027, P = 7.3e-06, N = 7824) (0.89, 0.011, P = 0.88, N = 859)
rs1486945(T)/5:1943884* RP11-259O2.1 (0.74, -0.012, P = 8.6e-06, N = 7824) (0.68, -0.02, P = 0.7, N = 859)
rs2441949(A)/5:2627075* intergenic (0.091, 0.021, P = 1.1e-05, N = 7824) (0.022, 0.032, P = 0.85, N = 859)
rs2561114(A)/5:38349215 EGFLAM (0.69, -0.011, P = 3.1e-05, N = 7824) (0.22, -0.051, P = 0.38, N = 859)
rs1697824(C)/5:73710929* CTC-419K13.1 (0.41, -0.022, P = 1.4e-05, N = 7824) (0.63, 0.0084, P = 0.87, N = 859)
rs1479045(T)/6:124963281* NKAIN2 (0.21, 0.011, P = 4.6e-05, N = 7824) (0.36, -0.055, P = 0.26, N = 859)
rs683369(C)/6:160551204* SLC22A1 (0.77, -0.014, P = 1.1e-07, N = 7824) (0.97, -0.17, P = 0.21, N = 859)
rs3798167(T)/6:160567928* SLC22A1 (0.2, -0.013, P = 7.3e-07, N = 7824) (0.16, -0.04, P = 0.55, N = 859)
rs3125055(A)/6:160736787* intergenic (0.12, 0.017, P = 2.1e-05, N = 7824) (0.22, 0.045, P = 0.42, N = 859)
rs6941991(T)/6:18396689* RNF144B (0.42, 0.021, P = 4.1e-05, N = 7824) (0.36, -0.038, P = 0.46, N = 859)
rs12202023(T)/6:19351564* RPL5P20 (0.79, -0.014, P = 3.9e-07, N = 7824) (0.92, 0.16, P = 0.077, N = 859)
rs807532(T)/6:24549668* KIAA0319 (0.069, 0.02, P = 7.5e-06, N = 7824) (0.15, 0.025, P = 0.71, N = 859)
rs12192135(A)/6:82001561* intergenic (0.26, -0.012, P = 4.7e-06, N = 7824) (0.053, 0.088, P = 0.41, N = 859)
rs9353315(A)/6:86149938* intergenic (0.88, -0.015, P = 2.2e-05, N = 7824) (0.73, -0.053, P = 0.34, N = 859)
rs10241456(A)/7:129712524 KLHDC10 (0.54, 0.012, P = 7.6e-06, N = 7824) (0.82, 0.13, P = 0.037, N = 859)
rs2161873(T)/7:131974388* PLXNA4 (0.71, 0.011, P = 3e-05, N = 7824) (0.65, -0.088, P = 0.087, N = 859)
rs6967077(A)/7:51628033 intergenic (0.21, 0.011, P = 4e-05, N = 7824) (0.32, -0.11, P = 0.034, N = 859)
rs11780215(A)/8:118057538* SLC30A8 (0.85, 0.016, P = 3.7e-06, N = 7824) (0.97, 0.12, P = 0.44, N = 859)
rs4307325(A)/8:124421397 ATAD2 (0.7, 0.011, P = 1.5e-05, N = 7824) (0.66, -0.11, P = 0.029, N = 859)
rs11784254(A)/8:40357901 intergenic (0.23, 0.011, P = 2.5e-05, N = 7824) (0.29, 0.078, P = 0.15, N = 859)
rs12680983(T)/8:42104338 RP11-231D20.2 (0.016, 0.11, P = 2.1e-05, N = 7824) (0.046, 0.0082, P = 0.94, N = 859)
rs10097669(T)/8:4437465 CSMD1 (0.68, 0.011, P = 4.3e-05, N = 7824) (0.95, 0.16, P = 0.16, N = 859)
rs10108023(A)/8:49717484 intergenic (0.26, 0.012, P = 9.8e-06, N = 7824) (0.77, 0.00052, P = 0.99, N = 859)
rs17641971(T)/8:49884817* intergenic (0.66, -0.025, P = 3.4e-22, N = 7824) (0.77, -0.078, P = 0.17, N = 859)
rs11779189(C)/8:50030592* intergenic (0.61, 0.018, P = 6.8e-13, N = 7824) (0.42, -0.0095, P = 0.84, N = 859)
rs12543837(A)/8:6413948 MCPH1 (0.88, 0.032, P = 1.7e-05, N = 7824) (0.94, -0.033, P = 0.74, N = 859)
rs2033069(T)/8:81079607 TPD52 (0.32, 0.011, P = 4.7e-05, N = 7824) (0.66, 0.033, P = 0.51, N = 859)
rs2987735(A)/9:103955515 LPPR1 (0.21, 0.011, P = 2.1e-05, N = 7824) (0.41, -0.044, P = 0.38, N = 859)
rs1169752(A)/9:29329933* intergenic (0.77, -0.011, P = 4.5e-05, N = 7824) (0.86, -0.06, P = 0.4, N = 859)
rs6559415(A)/9:81443855* intergenic (0.26, 0.011, P = 3e-05, N = 7824) (0.74, -0.011, P = 0.84, N = 859)
Results from Univariable Mendelian Randomization of Glutarylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 92 0.18 (-0.34- 0.7) P=0.5 0.86 1 0 (0- 32.5) NA NA 0.0065 P=0.54
MR-Egger 92 -0.038 (-0.91- 0.83) P=0.93 0.86 1 0 (0- 32.5) 86 0.61 0.0065 P=0.54
Weighted median 92 0.044 (-0.85- 0.94) P=0.92 0.86 1 0 (0- 32.5) NA NA 0.0065 P=0.54
Results from Univariable MRPRESSO of Glutarylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.18 0.27 0.67 0.5
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Glutarylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 37 0.37 (-0.51- 1.3) P=0.41 0.88 0.42 2.54 (0- 66.8) NA NA 0.0047 P=0.77
MR-Egger 37 0.22 (-1.1- 1.6) P=0.75 0.88 0.42 2.54 (0- 66.8) 42 0.18 0.0047 P=0.77
Weighted median 37 0.044 (-1.3- 1.3) P=0.95 0.88 0.42 2.54 (0- 66.8) NA NA 0.0047 P=0.77
Results from Univariable MRPRESSO of Glutarylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.37 0.45 0.83 0.41
beta.exposure Outlier-corrected NA NA NA NA

Isovalerylcarnitine

Instruments Associations with Isovalerylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Isovalerylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs990034(A)/1:147251898* RP11-433J22.3 (0.56, -0.012, P = 1.3e-05, N = 7824) (0.44, 0.084, P = 0.088, N = 859)
rs10919117(A)/1:162267823* NOS1AP (0.51, -0.013, P = 4e-05, N = 7824) (0.37, -0.07, P = 0.16, N = 859)
rs2501856(C)/1:212856985* BATF3 (0.54, 0.012, P = 5.8e-06, N = 7824) (0.75, 0.072, P = 0.19, N = 859)
rs10638035(TTG)/1:219889972 SLC30A10 (0.43, -0.13, P = 2.7e-06, N = 1959) (0.68, -0.016, P = 0.75, N = 859)
rs35800687(G)/1:22731893 intergenic (0.31, 0.22, P = 5e-06, N = 1959) (0.17, -0.061, P = 0.35, N = 859)
rs771390(T)/1:34750936* intergenic (0.24, -0.016, P = 1.2e-05, N = 7824) (0.19, -0.015, P = 0.8, N = 859)
rs10889028(A)/1:57625649* DAB1 (0.42, -0.013, P = 7.1e-07, N = 7824) (0.3, 0.089, P = 0.091, N = 859)
rs10157665(A)/1:97734344* DPYD (0.74, -0.017, P = 4.2e-05, N = 7824) (0.96, 0.14, P = 0.28, N = 859)
rs4918121(A)/10:106392464 intergenic (0.31, -0.23, P = 6.1e-06, N = 1959) (0.13, 0.11, P = 0.13, N = 859)
rs884263(T)/10:36964639 intergenic (0.53, 0.011, P = 4.4e-05, N = 7824) (0.5, 0.0013, P = 0.98, N = 859)
rs7903712(C)/10:60516806* BICC1 (0.21, 0.014, P = 4.9e-05, N = 7824) (0.36, 0.00082, P = 0.99, N = 859)
rs12778367(A)/10:88116246 GRID1 (0.18, 0.2, P = 6.8e-06, N = 1959) (0.026, -0.13, P = 0.38, N = 859)
rs2852371(A)/11:106408212* intergenic (0.58, 0.013, P = 4e-06, N = 7824) (0.55, 0.051, P = 0.29, N = 859)
rs12294679(C)/11:11078054 intergenic (0.23, -0.015, P = 3.8e-05, N = 7824) (0.058, 0.0012, P = 0.99, N = 859)
rs4483623(T)/11:113352557 intergenic (0.97, -0.038, P = 2.3e-05, N = 7824) (0.97, -0.026, P = 0.86, N = 859)
rs7106005(T)/11:11598372 GALNT18 (0.82, 0.02, P = 7.7e-07, N = 7824) (0.39, -0.061, P = 0.22, N = 859)
rs2198256(T)/11:80187596* intergenic (0.53, 0.011, P = 4.9e-05, N = 7824) (0.19, 0.011, P = 0.86, N = 859)
rs80291290(T)/11:88372241 GRM5 (0.18, 0.23, P = 2.6e-06, N = 1959) (0.034, 0.042, P = 0.75, N = 859)
rs12281336(T)/11:98040562* intergenic (0.032, -0.085, P = 5e-05, N = 7824) (0.09, -0.016, P = 0.85, N = 859)
rs2682783(A)/12:119114569* intergenic (0.49, 0.012, P = 1.1e-05, N = 7824) (0.51, -0.017, P = 0.71, N = 859)
rs4882733(C)/12:128796587 TMEM132C (0.81, -0.019, P = 3.6e-05, N = 7824) (0.6, -0.097, P = 0.045, N = 859)
rs56076700(A)/12:129163020 TMEM132C (0.077, 0.35, P = 5e-06, N = 1959) (0.069, 0.061, P = 0.52, N = 859)
rs4763908(T)/12:13100332 GPRC5D (0.29, -0.015, P = 2.4e-05, N = 7824) (0.78, -0.072, P = 0.21, N = 859)
rs11051552(A)/12:31890602* intergenic (0.52, -0.012, P = 8.5e-06, N = 7824) (0.36, -0.11, P = 0.032, N = 859)
rs11177321(A)/12:69031913* RAP1B (0.12, 0.019, P = 1.6e-05, N = 7824) (0.016, 0.011, P = 0.95, N = 859)
rs535554250(GA)/13:33192654 PDS5B (0.29, 0.15, P = 7.8e-06, N = 1959) (0.26, 0.064, P = 0.26, N = 859)
rs73178899(G)/13:37901134 intergenic (0.14, 0.25, P = 4.1e-06, N = 1959) (0.019, -0.12, P = 0.48, N = 859)
rs8003699(G)/14:21322586 intergenic (0.85, -0.16, P = 4.9e-06, N = 1959) (0.8, -0.039, P = 0.52, N = 859)
rs2354322(T)/14:62708880 intergenic (0.67, 0.014, P = 3.2e-05, N = 7824) (0.93, -0.32, P = 8e-04, N = 859)
rs8007846(A)/14:66262963* intergenic (0.55, 0.012, P = 8.4e-06, N = 7824) (0.22, -0.012, P = 0.83, N = 859)
rs16970633(T)/15:40642877 PHGR1 (0.16, -0.019, P = 7.4e-06, N = 7824) (0.33, 0.073, P = 0.15, N = 859)
rs9635324(A)/15:40703211* IVD (0.61, 0.034, P = 1.9e-35, N = 7824) (0.79, 0.022, P = 0.71, N = 859)
rs17672041(T)/15:40722426* IVD (0.12, 0.03, P = 1.3e-11, N = 7824) (0.019, 0.093, P = 0.6, N = 859)
rs2291449(A)/15:76579234* ETFA (0.91, -0.029, P = 2.4e-08, N = 7824) (0.99, 0.1, P = 0.62, N = 859)
rs7170052(T)/15:93457650* CHD2 (0.76, 0.015, P = 3.1e-05, N = 7824) (0.92, -0.18, P = 0.041, N = 859)
rs13338173(A)/16:54227083 intergenic (0.79, -0.014, P = 5e-05, N = 7824) (0.81, -0.00038, P = 0.99, N = 859)
rs7212115(T)/17:10891477* intergenic (0.73, -0.016, P = 1.2e-05, N = 7824) (0.57, 0.048, P = 0.28, N = 859)
rs8098563(A)/18:19930691* RP11-535A5.1 (0.46, 0.013, P = 3e-05, N = 7824) (0.37, 0.019, P = 0.71, N = 859)
rs16947039(T)/18:27211242* intergenic (0.074, 0.023, P = 1.9e-05, N = 7824) (0.16, -0.012, P = 0.86, N = 859)
rs16977314(C)/18:40710349 intergenic (0.89, 0.018, P = 4.7e-05, N = 7824) (0.98, -0.13, P = 0.41, N = 859)
rs1878679(T)/18:40726416 intergenic (0.11, -0.018, P = 4.4e-05, N = 7824) (0.056, 0.088, P = 0.41, N = 859)
rs8099211(A)/18:43103958 RP11-749H17.1 (0.21, -0.015, P = 1.9e-05, N = 7824) (0.39, -0.0087, P = 0.86, N = 859)
rs36035559(A)/19:7121597 INSR (0.17, 0.17, P = 8.9e-06, N = 1959) (0.015, 0.031, P = 0.88, N = 859)
rs2138480(A)/2:118142725* intergenic (0.12, -0.019, P = 1.8e-05, N = 7824) (0.02, -0.13, P = 0.46, N = 859)
rs76530645(A)/2:175558061 AC018890.6 (0.11, -0.16, P = 4.6e-06, N = 1959) (0.016, -0.043, P = 0.82, N = 859)
rs11680464(A)/2:1882824* MYT1L (0.066, 0.025, P = 2.9e-05, N = 7824) (0.043, -0.14, P = 0.24, N = 859)
rs4505564(T)/2:240871018* NDUFA10 (0.79, 0.016, P = 4.9e-06, N = 7824) (0.94, -0.041, P = 0.69, N = 859)
rs17546912(C)/2:66225155 AC074391.1 (0.11, -0.31, P = 3.5e-06, N = 1959) (0.015, -0.011, P = 0.96, N = 859)
rs2232575(C)/20:36974512 LBP (0.16, -0.017, P = 3.3e-05, N = 7824) (0.12, 0.006, P = 0.93, N = 859)
rs1201971(T)/20:59290436 intergenic (0.47, 0.012, P = 1.4e-05, N = 7824) (0.5, 0.02, P = 0.68, N = 859)
rs4616554(A)/21:32420859* intergenic (0.076, -0.026, P = 1.2e-05, N = 7824) (0.2, 0.033, P = 0.59, N = 859)
rs9289761(T)/3:147443447 intergenic (0.55, 0.023, P = 3.9e-05, N = 7824) (0.32, 0.06, P = 0.24, N = 859)
rs12636822(C)/3:36329450 intergenic (0.16, 0.21, P = 7.8e-06, N = 1959) (0.032, 0.16, P = 0.24, N = 859)
rs383911(A)/3:41122345* intergenic (0.56, -0.013, P = 3e-06, N = 7824) (0.33, -0.032, P = 0.54, N = 859)
rs13075137(T)/3:4765093* ITPR1 (0.44, -0.024, P = 7.5e-06, N = 7824) (0.23, 0.013, P = 0.82, N = 859)
rs12494255(A)/3:99003734 intergenic (0.77, 0.031, P = 2.7e-06, N = 7824) (0.8, -0.019, P = 0.74, N = 859)
rs6833958(T)/4:125848110 intergenic (0.88, -0.27, P = 9.7e-07, N = 1959) (0.84, -0.077, P = 0.24, N = 859)
rs7668227(A)/4:187061084 FAM149A (0.9, 0.024, P = 7.9e-06, N = 7824) (0.98, 0.16, P = 0.33, N = 859)
rs9327595(A)/5:130492613* HINT1 (0.031, -0.042, P = 6.9e-07, N = 7824) (0.23, -0.056, P = 0.34, N = 859)
rs7356708(C)/5:130593723 CDC42SE2 (0.039, -0.042, P = 4.4e-08, N = 7824) (0.6, -0.031, P = 0.53, N = 859)
rs6596022(T)/5:130767121* RAPGEF6 (0.96, 0.045, P = 6.8e-09, N = 7824) (0.57, 0.036, P = 0.46, N = 859)
rs3805681(T)/5:131537860* P4HA2 (0.54, 0.03, P = 1e-28, N = 7824) (0.75, 0.01, P = 0.86, N = 859)
rs334902(C)/5:131586559* P4HA2 (0.44, 0.029, P = 8e-27, N = 7824) (0.38, -0.031, P = 0.52, N = 859)
rs11950562(A)/5:131652529* SLC22A4 (0.52, 0.036, P = 2.3e-41, N = 7824) (0.74, -0.034, P = 0.54, N = 859)
rs11385258(TA)/5:131748241 C5orf56 (0.35, 0.13, P = 4.9e-06, N = 1959) (0.24, 0.12, P = 0.038, N = 859)
rs803222(A)/5:132208468* LEAP2 (0.54, 0.011, P = 2.6e-05, N = 7824) (0.31, 0.048, P = 0.35, N = 859)
rs10491300(T)/5:136354227* SPOCK1 (0.083, 0.022, P = 4.5e-05, N = 7824) (0.23, -0.06, P = 0.29, N = 859)
rs2963485(T)/5:148452043* CTC-529P8.1 (0.19, -0.018, P = 1.1e-06, N = 7824) (0.37, 0.013, P = 0.8, N = 859)
rs283429(C)/5:153904147* intergenic (0.088, 0.022, P = 4.2e-05, N = 7824) (0.31, -0.038, P = 0.45, N = 859)
rs13355460(T)/5:157385133 intergenic (0.65, 0.024, P = 4.9e-05, N = 7824) (0.53, -0.0023, P = 0.96, N = 859)
rs10062095(A)/5:81900261* intergenic (0.77, 0.026, P = 4.3e-05, N = 7824) (0.61, -0.021, P = 0.67, N = 859)
rs73435033(T)/6:11172620 RP3-510L9.1 (0.14, -0.24, P = 3.2e-06, N = 1959) (0.17, -0.11, P = 0.076, N = 859)
rs4463295(A)/6:123016251 PKIB (0.57, 0.013, P = 1.6e-06, N = 7824) (0.36, 0.0094, P = 0.85, N = 859)
rs9464891(T)/6:16389631* ATXN1 (0.12, -0.25, P = 5e-06, N = 1959) (0.23, 0.096, P = 0.087, N = 859)
rs2213581(T)/6:32388546* intergenic (0.2, -0.026, P = 4e-05, N = 7824) (0.22, 0.12, P = 0.033, N = 859)
rs10947808(T)/6:39323615* KIF6 (0.81, -0.017, P = 1.2e-06, N = 7824) (0.31, 0.00071, P = 0.99, N = 859)
rs972224(C)/6:41210049 TREML4 (0.092, 0.022, P = 3.3e-05, N = 7824) (0.3, -0.088, P = 0.1, N = 859)
rs9504983(A)/6:6989041 RP11-556O15.1 (0.24, 0.15, P = 4.1e-06, N = 1959) (0.052, -0.17, P = 0.13, N = 859)
rs444190(T)/7:101862777 CUX1 (0.94, -0.35, P = 8.5e-06, N = 1959) (0.83, 0.054, P = 0.4, N = 859)
rs917402(T)/7:150969535 SMARCD3 (0.1, 0.23, P = 4.1e-06, N = 1959) (0.013, -0.0089, P = 0.97, N = 859)
rs10259781(A)/7:152867025 intergenic (0.046, 0.032, P = 3.5e-05, N = 7824) (0.18, 0.019, P = 0.77, N = 859)
rs4716609(T)/7:155269627* CNPY1 (0.21, 0.015, P = 1.2e-05, N = 7824) (0.091, 0.1, P = 0.23, N = 859)
rs13242809(A)/7:22746564 intergenic (0.27, -0.11, P = 6.7e-06, N = 1959) (0.51, -0.05, P = 0.31, N = 859)
rs59591051(A)/7:29877857 WIPF3 (0.15, 0.23, P = 8.2e-06, N = 1959) (0.21, -0.066, P = 0.27, N = 859)
rs11774655(T)/8:11271426 C8orf12 (0.075, 0.024, P = 4.3e-05, N = 7824) (0.19, -0.016, P = 0.79, N = 859)
rs10096893(A)/8:2254703* intergenic (0.68, 0.034, P = 1e-05, N = 7824) (0.56, 0.11, P = 0.034, N = 859)
rs17054370(T)/8:25669353* intergenic (0.92, 0.022, P = 2.5e-05, N = 7824) (0.79, 0.0052, P = 0.93, N = 859)
rs891404(A)/8:40276391* intergenic (0.48, 0.012, P = 7.5e-06, N = 7824) (0.6, -0.019, P = 0.7, N = 859)
rs13292819(A)/9:38227878 intergenic (0.11, 0.022, P = 2.7e-05, N = 7824) (0.059, 0.15, P = 0.14, N = 859)
rs10867534(T)/9:83054485 intergenic (0.22, 0.18, P = 7.4e-06, N = 1959) (0.44, -0.053, P = 0.28, N = 859)
rs2031970(T)/9:92204172 intergenic (0.23, -0.24, P = 9.8e-06, N = 1959) (0.084, -0.094, P = 0.27, N = 859)
rs9775485(T)/9:95611913 ZNF484 (0.59, -0.014, P = 2e-07, N = 7824) (0.32, 0.037, P = 0.47, N = 859)
Results from Univariable Mendelian Randomization of Isovalerylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 92 -0.0013 (-0.14- 0.14) P=0.99 7.3 31 7.69 (0- 72.6) NA NA -8.7e-05 P=0.99
MR-Egger 92 -0.00077 (-0.18- 0.17) P=0.99 7.3 31 7.69 (0- 72.6) 99 0.24 -8.7e-05 P=0.99
Weighted median 92 -0.11 (-0.35- 0.12) P=0.34 7.3 31 7.69 (0- 72.6) NA NA -8.7e-05 P=0.99
Results from Univariable MRPRESSO of Isovalerylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.07 -0.02 0.99
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Isovalerylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 48 0.039 (-0.12- 0.2) P=0.62 12 29 9.84 (0- 83.7) NA NA 0.001 P=0.94
MR-Egger 48 0.034 (-0.18- 0.25) P=0.76 12 29 9.84 (0- 83.7) 55 0.17 0.001 P=0.94
Weighted median 48 0.064 (-0.16- 0.29) P=0.58 12 29 9.84 (0- 83.7) NA NA 0.001 P=0.94
Results from Univariable MRPRESSO of Isovalerylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.04 0.08 0.49 0.63
beta.exposure Outlier-corrected NA NA NA NA

Hexanoylcarnitine

Instruments Associations with Hexanoylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Hexanoylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs11184443(T)/1:105666096* intergenic (0.25, -0.015, P = 4e-05, N = 7824) (0.32, 0.045, P = 0.38, N = 859)
rs16852535(A)/1:230881658* CAPN9 (0.32, 0.016, P = 3.8e-06, N = 7824) (0.54, -0.079, P = 0.11, N = 859)
rs4649225(A)/1:233544651* intergenic (0.35, -0.014, P = 4.1e-05, N = 7824) (0.23, 0.033, P = 0.56, N = 859)
rs12060939(C)/1:74033051 intergenic (0.27, -0.014, P = 4.2e-05, N = 7824) (0.21, 0.0058, P = 0.92, N = 859)
rs10518500(T)/1:75808588* SLC44A5 (0.79, 0.016, P = 3.3e-06, N = 7824) (0.96, 0.018, P = 0.88, N = 859)
rs699683(A)/1:76172512* RP4-682C21.5 (0.066, 0.034, P = 5.4e-09, N = 7824) (0.024, 0.036, P = 0.82, N = 859)
rs11161521(T)/1:76216330* ACADM (0.7, 0.07, P = 6.4e-100, N = 7824) (0.86, -0.13, P = 0.055, N = 859)
rs56352044(T)/1:76248706 RABGGTB (0.23, -0.3, P = 9.1e-15, N = 1881) (0.14, 0.15, P = 0.033, N = 859)
rs5745331(A)/1:76273313* MSH4 (0.72, -0.048, P = 1.6e-45, N = 7824) (0.89, 0.085, P = 0.27, N = 859)
rs1144337(T)/1:76278877 MSH4 (0.1, 0.03, P = 2.6e-09, N = 7824) (0.19, -0.061, P = 0.31, N = 859)
rs1796810(T)/1:76403305 intergenic (0.29, 0.046, P = 5e-42, N = 7824) (0.32, -0.0091, P = 0.86, N = 859)
rs572200(T)/1:76724652* ST6GALNAC3 (0.21, -0.017, P = 4.9e-05, N = 7824) (0.18, -0.024, P = 0.7, N = 859)
rs11162212(A)/1:77256966* intergenic (0.43, 0.014, P = 1.4e-05, N = 7824) (0.53, -0.046, P = 0.34, N = 859)
rs228455(T)/1:79624739* intergenic (0.14, 0.036, P = 4.1e-05, N = 7824) (0.31, 0.066, P = 0.21, N = 859)
rs3738572(A)/1:85391140* MCOLN2 (0.46, 0.012, P = 1.4e-05, N = 7824) (0.26, -0.028, P = 0.61, N = 859)
rs4463806(C)/10:115597993* DCLRE1A (0.77, -0.18, P = 6e-06, N = 1881) (0.81, 0.1, P = 0.1, N = 859)
rs2242206(T)/10:61414011* SLC16A9 (0.26, 0.015, P = 2.3e-05, N = 7824) (0.09, 0.076, P = 0.36, N = 859)
rs1171615(T)/10:61469090* SLC16A9 (0.78, 0.025, P = 4e-11, N = 7824) (0.76, 0.02, P = 0.73, N = 859)
rs1998881(T)/10:8863208* intergenic (0.21, -0.017, P = 1.3e-06, N = 7824) (0.2, -0.0023, P = 0.97, N = 859)
rs17503531(T)/10:91732224* intergenic (0.096, 0.021, P = 3.3e-05, N = 7824) (0.17, 0.018, P = 0.78, N = 859)
rs12762813(A)/10:93461648* intergenic (0.12, -0.018, P = 3.7e-05, N = 7824) (0.012, -0.21, P = 0.34, N = 859)
rs76988133(G)/11:103471636 intergenic (0.061, -0.4, P = 1.2e-07, N = 1881) (0.042, 0.084, P = 0.49, N = 859)
rs1613187(G)/11:122430156 intergenic (0.8, 0.18, P = 8.7e-06, N = 1881) (0.95, 0.0085, P = 0.94, N = 859)
rs11224138(T)/11:134842214* intergenic (0.13, -0.041, P = 5.3e-06, N = 7824) (0.11, 0.17, P = 0.034, N = 859)
rs5806187(AAAT)/13:101608997 NALCN-AS1 (0.98, 0.38, P = 9.7e-06, N = 1881) (0.85, -0.034, P = 0.62, N = 859)
rs7991563(A)/13:43688013* DNAJC15 (0.8, -0.016, P = 2.7e-06, N = 7824) (0.8, -0.024, P = 0.7, N = 859)
rs9671614(C)/14:33037956* AKAP6 (0.44, 0.2, P = 6.7e-06, N = 1881) (0.68, -0.0037, P = 0.94, N = 859)
rs8022497(C)/14:87533611* intergenic (0.068, 0.025, P = 4.9e-05, N = 7824) (0.086, -0.031, P = 0.72, N = 859)
rs4779616(C)/15:33591069* RP11-489D6.2 (0.053, 0.03, P = 3.4e-05, N = 7824) (0.036, 0.072, P = 0.56, N = 859)
rs12915128(A)/15:68734922* intergenic (0.49, 0.027, P = 4.3e-05, N = 7824) (0.81, 0.12, P = 0.048, N = 859)
rs1368843(A)/15:94908904* MCTP2 (0.42, -0.014, P = 1.3e-05, N = 7824) (0.34, 0.0079, P = 0.87, N = 859)
rs3743527(T)/16:16235681* ABCC1 (0.22, 0.014, P = 4.7e-05, N = 7824) (0.14, -0.032, P = 0.65, N = 859)
rs36021(A)/16:55711950 SLC6A2 (0.53, -0.17, P = 2.1e-06, N = 1881) (0.64, -0.062, P = 0.21, N = 859)
rs8059932(A)/16:66155276* intergenic (0.08, -0.2, P = 9.8e-06, N = 1881) (0.23, 0.039, P = 0.5, N = 859)
rs75887526(GCA)/16:78196411* WWOX (0.23, -0.24, P = 1.7e-06, N = 1881) (0.23, -0.047, P = 0.42, N = 859)
rs12598663(T)/16:7846716* intergenic (0.93, 0.026, P = 3e-05, N = 7824) (0.98, 0.052, P = 0.79, N = 859)
rs3764247(A)/16:810039* MSLN (0.76, -0.017, P = 2.1e-05, N = 7824) (0.75, 0.00053, P = 0.99, N = 859)
rs8075029(G)/17:13395850* HS3ST3A1 (0.87, -0.22, P = 7.7e-07, N = 1881) (0.99, -0.5, P = 0.014, N = 859)
rs658591(T)/17:26610769 KRT18P55 (0.8, -0.019, P = 2e-06, N = 7824) (0.63, -0.067, P = 0.18, N = 859)
rs76620359(C)/19:55725087 PTPRH (0.054, 0.41, P = 2.7e-06, N = 1881) (0.044, -0.15, P = 0.17, N = 859)
rs10170989(T)/2:107177168* intergenic (0.81, 0.017, P = 3.3e-05, N = 7824) (0.86, -0.008, P = 0.91, N = 859)
rs10171649(C)/2:125399340* CNTNAP5 (0.056, 0.028, P = 2.5e-05, N = 7824) (0.15, 0.056, P = 0.41, N = 859)
rs10928415(A)/2:149553139 intergenic (0.76, 0.22, P = 3e-06, N = 1881) (0.35, -0.022, P = 0.66, N = 859)
rs3769423(A)/2:168872075* STK39 (0.019, 0.051, P = 9.8e-06, N = 7824) (0.36, -0.0088, P = 0.86, N = 859)
rs12987318(A)/2:19772919* intergenic (0.041, 0.034, P = 1.3e-05, N = 7824) (0.084, -0.075, P = 0.4, N = 859)
rs6705260(T)/2:205039136 intergenic (0.87, -0.25, P = 1.4e-06, N = 1881) (0.97, -0.13, P = 0.34, N = 859)
rs7579973(A)/2:34933627 AC073218.2 (0.61, -0.025, P = 3.2e-05, N = 7824) (0.61, 0.0033, P = 0.95, N = 859)
rs10164760(G)/2:62212279 COMMD1 (0.018, -0.61, P = 1.2e-06, N = 1881) (0.36, 0.02, P = 0.69, N = 859)
rs4671179(G)/2:67586247 intergenic (0.45, -0.15, P = 4.7e-06, N = 1881) (0.37, 0.00051, P = 0.99, N = 859)
rs113107938(G)/2:7630499 intergenic (0.018, 0.64, P = 1.3e-06, N = 1881) (0.026, 0.17, P = 0.28, N = 859)
rs1666769(T)/2:79224687* intergenic (0.67, 0.015, P = 1.4e-05, N = 7824) (0.57, 0.0097, P = 0.85, N = 859)
rs4669343(A)/2:8970482* KIDINS220 (0.98, 0.085, P = 1.7e-05, N = 7824) (0.93, -0.095, P = 0.3, N = 859)
rs143973511(T)/3:122452571* PARP14 (0.1, -0.26, P = 3.7e-06, N = 1881) (0.049, 0.013, P = 0.91, N = 859)
rs1348656(T)/3:144933520* intergenic (0.8, -0.015, P = 1.9e-05, N = 7824) (0.61, 0.03, P = 0.56, N = 859)
rs17189202(A)/3:181986146* intergenic (0.13, 0.031, P = 1.6e-05, N = 7824) (0.024, 0.014, P = 0.93, N = 859)
rs1682962(A)/3:3834752* SUMF1 (0.58, 0.028, P = 2.2e-05, N = 7824) (0.11, -0.18, P = 0.019, N = 859)
rs4074087(A)/3:4681908* ITPR1 (0.07, 0.048, P = 2.1e-05, N = 7824) (0.18, 0.05, P = 0.42, N = 859)
rs2070630(C)/4:159644494* PPID (0.29, -0.021, P = 6.8e-10, N = 7824) (0.29, -0.047, P = 0.38, N = 859)
rs6536381(T)/4:159882193* C4orf45 (0.3, 0.014, P = 2.2e-05, N = 7824) (0.17, 0.029, P = 0.64, N = 859)
rs6553778(T)/4:168351130* intergenic (0.23, -0.017, P = 1.2e-06, N = 7824) (0.28, 0.017, P = 0.75, N = 859)
rs4863170(C)/4:190333580* intergenic (0.37, -0.15, P = 5.6e-06, N = 1881) (0.31, 0.028, P = 0.59, N = 859)
rs11728264(T)/4:29777582* intergenic (0.24, -0.015, P = 2.8e-05, N = 7824) (0.74, -0.066, P = 0.23, N = 859)
rs1477626(A)/5:101329818 intergenic (0.55, -0.026, P = 2.3e-05, N = 7824) (0.33, -0.066, P = 0.21, N = 859)
rs3776418(A)/5:10708871* DAP (0.067, 0.024, P = 4.3e-05, N = 7824) (0.047, 0.0086, P = 0.94, N = 859)
rs7716905(A)/5:131324377* ACSL6 (0.96, 0.035, P = 2.2e-05, N = 7824) (0.59, -0.046, P = 0.34, N = 859)
rs7705189(A)/5:131623358* P4HA2 (0.51, 0.019, P = 1.6e-08, N = 7824) (0.72, -0.13, P = 0.015, N = 859)
rs272869(A)/5:131677997* SLC22A4 (0.37, 0.022, P = 1.4e-11, N = 7824) (0.27, 0.11, P = 0.046, N = 859)
rs439787(T)/5:132882522* FSTL4 (0.63, 0.025, P = 4.7e-05, N = 7824) (0.51, 0.0037, P = 0.94, N = 859)
rs3798138(A)/5:136983954* KLHL3 (0.023, -0.042, P = 4.1e-05, N = 7824) (0.27, 0.11, P = 0.04, N = 859)
rs371846(T)/5:142188049* ARHGAP26 (0.082, -0.025, P = 2.1e-05, N = 7824) (0.25, -0.019, P = 0.73, N = 859)
rs11135316(A)/5:163939367* CTC-340A15.2 (0.73, 0.028, P = 4e-05, N = 7824) (0.6, -0.047, P = 0.33, N = 859)
rs1540603(A)/5:17220275* BASP1 (0.012, -0.11, P = 1.2e-05, N = 7824) (0.017, -0.39, P = 0.037, N = 859)
rs2002548(T)/5:173150415 CTB-43E15.3 (0.26, -0.14, P = 5.6e-06, N = 1881) (0.28, 0.053, P = 0.33, N = 859)
rs13355979(A)/5:32984015* CTD-2066L21.3 (0.57, -0.014, P = 3.7e-05, N = 7824) (0.15, -0.047, P = 0.48, N = 859)
rs12521153(A)/5:52788201* intergenic (0.32, 0.16, P = 7.6e-06, N = 1881) (0.27, 0.13, P = 0.015, N = 859)
rs6861760(T)/5:557551 intergenic (0.025, 0.31, P = 4.4e-06, N = 1881) (0.28, 0.084, P = 0.12, N = 859)
rs7734050(T)/5:57173905* intergenic (0.73, 0.014, P = 4.2e-05, N = 7824) (0.65, -0.003, P = 0.95, N = 859)
rs1104684(G)/5:70968915 intergenic (0.47, -0.14, P = 9.1e-06, N = 1881) (0.83, -0.11, P = 0.084, N = 859)
rs4131193(A)/5:7583327* ADCY2 (0.31, 0.014, P = 2.2e-05, N = 7824) (0.56, -0.04, P = 0.42, N = 859)
rs10079045(A)/5:90266322 GPR98 (0.26, 0.17, P = 2.1e-06, N = 1881) (0.66, -0.081, P = 0.12, N = 859)
rs170734(A)/5:98147041* intergenic (0.73, -0.015, P = 6.8e-06, N = 7824) (0.69, -0.016, P = 0.76, N = 859)
rs10053087(C)/5:9920412* intergenic (0.033, 0.034, P = 4.2e-05, N = 7824) (0.27, -0.066, P = 0.23, N = 859)
rs7745587(A)/6:108010940* intergenic (0.74, -0.016, P = 6.7e-06, N = 7824) (0.87, -0.08, P = 0.25, N = 859)
rs11753995(A)/6:160575366* SLC22A1 (0.16, -0.023, P = 7.2e-08, N = 7824) (0.033, 0.013, P = 0.92, N = 859)
rs76002427(G)/6:164386971 intergenic (0.078, -0.28, P = 7.5e-07, N = 1881) (0.029, -0.26, P = 0.082, N = 859)
rs3846828(A)/6:24282117* DCDC2 (0.1, 0.021, P = 3.2e-05, N = 7824) (0.069, -0.038, P = 0.7, N = 859)
rs2071538(A)/6:32818678* TAP1 (0.23, 0.015, P = 1.7e-05, N = 7824) (0.026, -0.093, P = 0.53, N = 859)
rs9380734(C)/6:38293199 BTBD9 (0.02, -0.69, P = 7e-06, N = 1881) (0.27, 0.055, P = 0.31, N = 859)
rs9352088(C)/6:74987577* RP11-554D15.1 (0.75, -0.033, P = 3.1e-05, N = 7824) (0.56, 0.036, P = 0.46, N = 859)
rs884760(T)/6:8363853* intergenic (0.28, 0.014, P = 3e-05, N = 7824) (0.72, 0.00033, P = 1, N = 859)
rs4584058(A)/7:44132340* intergenic (0.35, -0.015, P = 1.1e-05, N = 7824) (0.56, -0.051, P = 0.29, N = 859)
rs10280701(T)/7:83627847* SEMA3A (0.21, 0.015, P = 1.3e-05, N = 7824) (0.076, 0.092, P = 0.3, N = 859)
rs10095671(T)/8:133378663* KCNQ3 (0.91, -0.024, P = 4e-06, N = 7824) (0.86, -0.00023, P = 1, N = 859)
rs145011241(GGAGT)/8:144238923 LY6H (0.41, -0.21, P = 7.2e-06, N = 1881) (0.47, 0.049, P = 0.31, N = 859)
rs11990475(A)/8:25954842* intergenic (0.9, -0.022, P = 1.9e-05, N = 7824) (0.85, 0.059, P = 0.37, N = 859)
rs10096903(T)/8:85661097* RALYL (0.25, 0.015, P = 2e-05, N = 7824) (0.4, -0.044, P = 0.38, N = 859)
rs11990096(A)/8:9195378* RP11-115J16.1 (0.22, -0.029, P = 2.8e-05, N = 7824) (0.42, 0.03, P = 0.55, N = 859)
rs2915420(T)/9:103955550* LPPR1 (0.16, -0.02, P = 2.1e-06, N = 7824) (0.17, 0.076, P = 0.25, N = 859)
rs3132311(A)/9:137430554* RP11-473E2.4 (0.21, 0.014, P = 4.4e-05, N = 7824) (0.037, -0.042, P = 0.74, N = 859)
rs79368155(T)/9:18097804* intergenic (0.047, 0.39, P = 6.2e-06, N = 1881) (0.01, -0.00031, P = 1, N = 859)
rs12340115(A)/9:8281308* intergenic (0.99, 0.11, P = 3.6e-05, N = 7824) (0.91, -0.088, P = 0.28, N = 859)
rs11141474(A)/9:89272127* RP11-395D3.1 (0.28, -0.014, P = 4.6e-05, N = 7824) (0.17, -0.073, P = 0.25, N = 859)
Results from Univariable Mendelian Randomization of Hexanoylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 102 -0.046 (-0.13- 0.038) P=0.28 8 38 0 (0- 70.4) NA NA -0.0052 P=0.51
MR-Egger 102 -0.027 (-0.13- 0.072) P=0.59 8 38 0 (0- 70.4) 112 0.2 -0.0052 P=0.51
Weighted median 102 -0.06 (-0.17- 0.054) P=0.3 8 38 0 (0- 70.4) NA NA -0.0052 P=0.51
Results from Univariable MRPRESSO of Hexanoylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.04 -1.07 0.28
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Hexanoylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 24 -0.046 (-0.14- 0.049) P=0.34 21 26 0 (0- 80.7) NA NA 0.012 P=0.55
MR-Egger 24 -0.078 (-0.22- 0.064) P=0.29 21 26 0 (0- 80.7) 28 0.18 0.012 P=0.55
Weighted median 24 -0.066 (-0.18- 0.052) P=0.27 21 26 0 (0- 80.7) NA NA 0.012 P=0.55
Results from Univariable MRPRESSO of Hexanoylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.05 -0.95 0.35
beta.exposure Outlier-corrected NA NA NA NA

L-Octanoylcarnitine

Instruments Associations with L-Octanoylcarnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Octanoylcarnitine (Shin et al/Long et al) eGFR (CSSCD)
rs11184443(T)/1:105666096* intergenic (0.25, -0.019, P = 1.4e-05, N = 7824) (0.32, 0.045, P = 0.38, N = 859)
rs857703(A)/1:158687224* OR6K3 (0.38, 0.014, P = 4.1e-05, N = 7824) (0.13, 0.12, P = 0.11, N = 859)
rs332765(T)/1:174655782* RABGAP1L (0.36, 0.13, P = 2.4e-06, N = 1948) (0.9, -0.075, P = 0.34, N = 859)
rs7552404(A)/1:76135946* intergenic (0.7, 0.075, P = 1.3e-77, N = 7824) (0.83, -0.12, P = 0.061, N = 859)
rs699683(A)/1:76172512* RP4-682C21.5 (0.067, 0.047, P = 5.4e-11, N = 7824) (0.024, 0.036, P = 0.82, N = 859)
rs12130832(T)/1:76234294* ACADM (0.71, -0.049, P = 5.4e-33, N = 7824) (0.79, 0.0095, P = 0.87, N = 859)
rs56352044(T)/1:76248706 RABGGTB (0.23, -0.3, P = 9.1e-15, N = 1948) (0.14, 0.15, P = 0.033, N = 859)
rs1144337(T)/1:76278877 MSH4 (0.1, 0.044, P = 3.3e-14, N = 7824) (0.19, -0.061, P = 0.31, N = 859)
rs1796810(T)/1:76403305 intergenic (0.29, 0.045, P = 6.1e-28, N = 7824) (0.32, -0.0091, P = 0.86, N = 859)
rs185292654(T)/1:76465955 intergenic (0.035, 0.55, P = 1.4e-06, N = 1948) (0.026, 0.0014, P = 0.99, N = 859)
rs4463806(C)/10:115597993* DCLRE1A (0.77, -0.18, P = 6e-06, N = 1948) (0.81, 0.1, P = 0.1, N = 859)
rs7894167(C)/10:47556919* intergenic (0.38, 0.17, P = 3.8e-06, N = 1948) (0.52, 0.1, P = 0.037, N = 859)
rs1998881(T)/10:8863208* intergenic (0.21, -0.017, P = 5e-05, N = 7824) (0.2, -0.0023, P = 0.97, N = 859)
rs17503531(T)/10:91732224* intergenic (0.096, 0.024, P = 4.2e-05, N = 7824) (0.17, 0.018, P = 0.78, N = 859)
rs582119(T)/11:107443420 intergenic (0.38, -0.015, P = 3.1e-05, N = 7824) (0.48, 0.024, P = 0.62, N = 859)
rs4757051(A)/11:20333248* intergenic (0.72, -0.018, P = 1.9e-05, N = 7824) (0.43, 0.11, P = 0.027, N = 859)
rs6485709(T)/11:46934309* LRP4 (0.011, 0.13, P = 5.3e-06, N = 7824) (0.041, 0.14, P = 0.25, N = 859)
rs7130402(A)/11:48115606* PTPRJ (0.93, 0.032, P = 9.9e-06, N = 7824) (0.91, -0.013, P = 0.88, N = 859)
rs1480639(T)/12:29014476 intergenic (0.57, -0.015, P = 3e-05, N = 7824) (0.73, -0.031, P = 0.57, N = 859)
rs7973509(A)/12:40354147* SLC2A13 (0.27, -0.018, P = 1.7e-05, N = 7824) (0.097, 0.042, P = 0.61, N = 859)
rs7334793(T)/13:106512641 intergenic (0.5, -0.015, P = 8e-06, N = 7824) (0.39, 0.031, P = 0.53, N = 859)
rs1446791(A)/13:85194772* intergenic (0.17, -0.037, P = 2e-05, N = 7824) (0.33, -0.061, P = 0.26, N = 859)
rs8012258(T)/14:104991128 TMEM179 (0.53, -0.014, P = 4.2e-05, N = 7824) (0.33, -0.0044, P = 0.93, N = 859)
rs8003176(T)/14:88760692* KCNK10 (0.77, 0.033, P = 4.5e-05, N = 7824) (0.9, 0.076, P = 0.34, N = 859)
rs11848217(G)/14:93048314* RIN3 (0.24, -0.18, P = 7.1e-06, N = 1948) (0.33, -0.029, P = 0.58, N = 859)
rs1801591(A)/15:76578762* ETFA (0.09, 0.029, P = 3.4e-05, N = 7824) (0.013, -0.1, P = 0.62, N = 859)
rs3816282(A)/15:79350840* RASGRF1 (0.91, 0.041, P = 1.9e-05, N = 7824) (0.94, 0.23, P = 0.025, N = 859)
rs2379991(T)/15:83445338* FSD2 (0.28, 0.017, P = 4.6e-05, N = 7824) (0.45, 0.0029, P = 0.95, N = 859)
rs924135(A)/16:16123459* ABCC1 (0.38, -0.021, P = 1.1e-09, N = 7824) (0.53, -0.06, P = 0.21, N = 859)
rs45512591(C)/16:16147264* ABCC1 (0.28, -0.23, P = 4.7e-08, N = 1948) (0.37, -0.056, P = 0.26, N = 859)
rs3743527(T)/16:16235681* ABCC1 (0.22, 0.019, P = 4.7e-06, N = 7824) (0.14, -0.032, P = 0.65, N = 859)
rs2239323(A)/16:16278695 ABCC6 (0.5, 0.015, P = 2.6e-05, N = 7824) (0.65, 0.04, P = 0.44, N = 859)
rs79825592(T)/16:73692861 intergenic (0.16, 0.28, P = 3.1e-06, N = 1948) (0.026, -0.14, P = 0.36, N = 859)
rs2133336(A)/17:8313854* NDEL1 (0.4, 0.015, P = 9.6e-06, N = 7824) (0.17, -0.029, P = 0.65, N = 859)
rs2156436(T)/18:57457267* intergenic (0.031, 0.12, P = 2.5e-05, N = 7824) (0.23, -0.027, P = 0.64, N = 859)
rs888860(A)/19:35465187* intergenic (0.35, -0.018, P = 9.4e-07, N = 7824) (0.1, 0.19, P = 0.021, N = 859)
rs7246133(T)/19:53162102* ZNF83 (0.66, 0.021, P = 9.5e-06, N = 7824) (0.48, -0.0079, P = 0.87, N = 859)
rs7255657(A)/19:55902257* RPL28 (0.93, 0.03, P = 3.7e-05, N = 7824) (0.76, -0.073, P = 0.18, N = 859)
rs10170989(T)/2:107177168* intergenic (0.81, 0.02, P = 4.8e-05, N = 7824) (0.86, -0.008, P = 0.91, N = 859)
rs1542341(T)/2:125383522* CNTNAP5 (0.94, -0.034, P = 2.5e-05, N = 7824) (0.8, -0.04, P = 0.51, N = 859)
rs10203979(C)/2:179022751* intergenic (0.23, 0.18, P = 3.4e-06, N = 1948) (0.36, -0.074, P = 0.14, N = 859)
rs11885860(T)/2:180398739* ZNF385B (0.93, -0.036, P = 3.9e-05, N = 7824) (0.95, 0.076, P = 0.49, N = 859)
rs6531077(A)/2:18237570* KCNS3 (0.46, 0.015, P = 1.2e-05, N = 7824) (0.8, -0.016, P = 0.79, N = 859)
rs4672596(T)/2:211648806* intergenic (0.4, 0.015, P = 9.6e-06, N = 7824) (0.44, -0.026, P = 0.58, N = 859)
rs4675009(A)/2:226660503* intergenic (0.82, 0.21, P = 3.6e-06, N = 1948) (0.82, -0.094, P = 0.14, N = 859)
rs17258702(A)/2:230764226* TRIP12 (0.23, -0.017, P = 4.7e-05, N = 7824) (0.036, 0.19, P = 0.15, N = 859)
rs2720162(T)/2:231629360* CAB39 (0.61, -0.015, P = 7.3e-06, N = 7824) (0.88, -0.12, P = 0.086, N = 859)
rs4241312(T)/2:3252636* TSSC1 (0.48, 0.015, P = 1.6e-05, N = 7824) (0.38, 0.0095, P = 0.85, N = 859)
rs2290101(C)/2:33952055* MYADML (0.34, 0.017, P = 2.7e-05, N = 7824) (0.44, -0.11, P = 0.025, N = 859)
rs112844005(T)/2:44684630* CAMKMT (0.05, 0.31, P = 9.7e-06, N = 1948) (0.043, -0.018, P = 0.87, N = 859)
rs6077844(A)/20:10579996* SLX4IP (0.42, 0.014, P = 2.5e-05, N = 7824) (0.35, -0.08, P = 0.12, N = 859)
rs1203869(T)/20:22533223* LINC00261 (0.015, 0.092, P = 4.9e-05, N = 7824) (0.15, -0.056, P = 0.39, N = 859)
rs542126572(GT)/20:32973901 ITCH (0.036, -0.23, P = 2e-06, N = 1948) (0.015, -0.026, P = 0.9, N = 859)
rs9979265(T)/21:29692982 intergenic (0.45, 0.014, P = 4.2e-05, N = 7824) (0.56, -0.014, P = 0.78, N = 859)
rs2776278(A)/21:37342699* RUNX1 (0.23, -0.017, P = 4.9e-05, N = 7824) (0.26, -0.00052, P = 0.99, N = 859)
rs2835328(A)/21:37622915* DOPEY2 (0.69, 0.018, P = 1.2e-05, N = 7824) (0.83, -0.019, P = 0.77, N = 859)
rs4239866(T)/22:17788722* intergenic (0.39, -0.029, P = 2.9e-05, N = 7824) (0.11, -0.047, P = 0.54, N = 859)
rs5755595(T)/22:35518839* CTA-714B7.5 (0.27, 0.24, P = 3.3e-06, N = 1948) (0.055, 0.1, P = 0.35, N = 859)
rs16855296(T)/3:144082862* intergenic (0.052, 0.038, P = 3.2e-05, N = 7824) (0.016, -0.047, P = 0.8, N = 859)
rs17756228(T)/3:172371929* NCEH1 (0.49, -0.014, P = 3.8e-05, N = 7824) (0.39, 0.07, P = 0.17, N = 859)
rs6443446(G)/3:177049627* intergenic (0.66, 0.15, P = 3.1e-06, N = 1948) (0.95, 0.042, P = 0.69, N = 859)
rs331869(T)/3:255395 CHL1 (0.98, -0.13, P = 7.8e-07, N = 7824) (0.81, -0.061, P = 0.32, N = 859)
rs4402896(T)/3:29848896* RBMS3 (0.56, 0.015, P = 1.8e-05, N = 7824) (0.61, -0.096, P = 0.051, N = 859)
rs1682962(A)/3:3834752* SUMF1 (0.58, 0.03, P = 3.7e-05, N = 7824) (0.11, -0.18, P = 0.019, N = 859)
rs12503954(A)/4:113916575* RP11-650J17.1 (0.29, -0.019, P = 2.1e-05, N = 7824) (0.6, -0.083, P = 0.095, N = 859)
rs7663005(T)/4:142092124* RNF150 (0.5, -0.014, P = 4.2e-05, N = 7824) (0.093, 0.044, P = 0.61, N = 859)
rs4835221(T)/4:146248122* intergenic (0.7, -0.03, P = 2.6e-05, N = 7824) (0.78, -0.00026, P = 1, N = 859)
rs956974(A)/4:156443527 RP13-487K5.1 (0.55, -0.014, P = 5e-05, N = 7824) (0.8, 0.0081, P = 0.89, N = 859)
rs35055965(T)/4:159193901* RP11-597D13.7 (0.24, -0.23, P = 3.6e-09, N = 1948) (0.16, -0.023, P = 0.72, N = 859)
rs8396(T)/4:159630817* PPID (0.7, 0.048, P = 1.4e-31, N = 7824) (0.65, 0.014, P = 0.78, N = 859)
rs10003821(T)/4:159877388* C4orf45 (0.36, -0.025, P = 6.6e-10, N = 7824) (0.35, -0.0021, P = 0.97, N = 859)
rs1347066(T)/4:159949116* C4orf45 (0.54, 0.015, P = 2.1e-05, N = 7824) (0.54, 0.031, P = 0.52, N = 859)
rs6857595(T)/4:187011126 TLR3 (0.28, 0.15, P = 9.6e-06, N = 1948) (0.31, 0.022, P = 0.66, N = 859)
rs9790569(T)/4:46734416* COX7B2 (0.18, -0.2, P = 9.3e-06, N = 1948) (0.14, -0.096, P = 0.17, N = 859)
rs17157494(A)/5:104409021* CTD-2374C24.1 (0.074, 0.029, P = 2.2e-05, N = 7824) (0.03, -0.16, P = 0.25, N = 859)
rs274567(T)/5:131714409* SLC22A5 (0.37, 0.016, P = 3.9e-06, N = 7824) (0.3, 0.049, P = 0.35, N = 859)
rs419418(T)/5:142175364* ARHGAP26 (0.92, 0.029, P = 4.7e-05, N = 7824) (0.76, 0.028, P = 0.62, N = 859)
rs1995777(T)/5:32987956* CTD-2066L21.3 (0.56, -0.014, P = 4.7e-05, N = 7824) (0.22, -0.04, P = 0.49, N = 859)
rs10940072(A)/5:65916784 MAST4 (0.39, -0.015, P = 1.2e-05, N = 7824) (0.31, 0.1, P = 0.052, N = 859)
rs1053657(T)/6:138734422* HEBP2 (0.13, 0.023, P = 4.8e-05, N = 7824) (0.54, 0.01, P = 0.83, N = 859)
rs13198822(T)/6:165806518* PDE10A (0.35, -0.014, P = 3.5e-05, N = 7824) (0.15, -0.039, P = 0.57, N = 859)
rs2989521(G)/6:167804569 intergenic (0.59, -0.16, P = 7.6e-06, N = 1948) (0.82, 0.12, P = 0.061, N = 859)
rs6907864(T)/6:24293324* DCDC2 (0.11, 0.026, P = 5.8e-06, N = 7824) (0.14, 0.02, P = 0.78, N = 859)
rs212934(T)/6:25537934* LRRC16A (0.39, -0.014, P = 3.8e-05, N = 7824) (0.34, 0.095, P = 0.065, N = 859)
rs9352088(C)/6:74987577* RP11-554D15.1 (0.75, -0.036, P = 3.3e-05, N = 7824) (0.56, 0.036, P = 0.46, N = 859)
rs884760(T)/6:8363853* intergenic (0.28, 0.019, P = 7.2e-06, N = 7824) (0.72, 0.00033, P = 1, N = 859)
rs6968131(T)/7:138468569* ATP6V0A4 (0.99, -0.19, P = 4.9e-05, N = 7824) (0.87, -0.0073, P = 0.92, N = 859)
rs7795715(A)/7:154639804* DPP6 (0.86, -0.024, P = 1.3e-05, N = 7824) (0.82, -0.03, P = 0.64, N = 859)
rs10235922(C)/7:155247106* EN2 (0.91, -0.03, P = 1.7e-05, N = 7824) (0.93, -0.03, P = 0.75, N = 859)
rs10224131(A)/7:35200804* DPY19L2P1 (0.42, -0.017, P = 3e-05, N = 7824) (0.48, 0.082, P = 0.088, N = 859)
rs12718664(A)/7:52527761 intergenic (0.59, -0.015, P = 2.4e-05, N = 7824) (0.31, -0.055, P = 0.29, N = 859)
rs2072454(T)/7:55214348* EGFR (0.54, -0.014, P = 4.9e-05, N = 7824) (0.5, 0.052, P = 0.28, N = 859)
rs7787623(T)/7:75404761* CCL26 (0.25, -0.043, P = 3.1e-05, N = 7824) (0.43, 0.017, P = 0.72, N = 859)
rs38558(T)/7:81884548* CACNA2D1 (0.74, -0.018, P = 2e-05, N = 7824) (0.93, -0.22, P = 0.015, N = 859)
rs7004977(T)/8:98483422* intergenic (0.82, 0.025, P = 4.9e-05, N = 7824) (0.81, 0.058, P = 0.34, N = 859)
rs140294778(TC)/9:101327543* GABBR2 (0.2, -0.18, P = 9.2e-06, N = 1948) (0.022, -0.11, P = 0.53, N = 859)
rs76592182(C)/9:118487530 intergenic (0.028, 0.58, P = 1.2e-06, N = 1948) (0.06, 0.085, P = 0.4, N = 859)
rs6475272(T)/9:18949249* FAM154A (0.23, -0.018, P = 2.2e-05, N = 7824) (0.067, 0.0017, P = 0.99, N = 859)
rs11143623(A)/9:76183000* intergenic (0.62, 0.014, P = 3.5e-05, N = 7824) (0.25, 0.072, P = 0.22, N = 859)
rs10868458(A)/9:89277187* RP11-395D3.1 (0.35, -0.017, P = 1.9e-06, N = 7824) (0.15, -0.068, P = 0.3, N = 859)
Results from Univariable Mendelian Randomization of L-Octanoylcarnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 100 -0.029 (-0.17- 0.11) P=0.68 7.3 31 9.22 (0- 79.2) NA NA -0.01 P=0.22
MR-Egger 100 0.034 (-0.14- 0.21) P=0.69 7.3 31 9.22 (0- 79.2) 115 0.11 -0.01 P=0.22
Weighted median 100 0.11 (-0.098- 0.33) P=0.29 7.3 31 9.22 (0- 79.2) NA NA -0.01 P=0.22
Results from Univariable MRPRESSO of L-Octanoylcarnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.07 -0.41 0.68
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Octanoylcarnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 19 -0.092 (-0.3- 0.11) P=0.38 13 12 17.3 (0- 72.3) NA NA -0.0099 P=0.55
MR-Egger 19 -0.051 (-0.3- 0.19) P=0.69 13 12 17.3 (0- 72.3) 17 0.44 -0.0099 P=0.55
Weighted median 19 0.12 (-0.18- 0.42) P=0.44 13 12 17.3 (0- 72.3) NA NA -0.0099 P=0.55
Results from Univariable MRPRESSO of L-Octanoylcarnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.09 0.1 -0.88 0.39
beta.exposure Outlier-corrected NA NA NA NA

Ureidopropionic acid

Instruments Associations with Ureidopropionic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Ureidopropionic acid (Shin et al/Long et al) eGFR (CSSCD)
rs75277555(T)/1:92235001 TGFBR3 (0.072, 0.16, P = 4e-06, N = 1956) (0.047, -0.008, P = 0.94, N = 859)
rs8013355(C)/14:52871418 intergenic (0.32, 0.16, P = 1.7e-06, N = 1956) (0.48, -0.013, P = 0.78, N = 859)
rs555045773(GA)/15:54319379 UNC13C (0.15, -1.1, P = 6.2e-06, N = 1956) (0.26, -0.069, P = 0.2, N = 859)
rs59930743(C)/17:3393604 ASPA (0.22, 0.18, P = 2.8e-06, N = 1956) (0.29, 0.013, P = 0.81, N = 859)
rs56104151(T)/18:61129481 intergenic (0.17, 0.15, P = 8.1e-06, N = 1956) (0.35, 0.031, P = 0.53, N = 859)
rs78734409(A)/2:12335302 AC096559.1 (0.038, 0.51, P = 3e-06, N = 1956) (0.025, 0.14, P = 0.37, N = 859)
rs71394795(GTTTA)/2:12355843 AC096559.1 (0.034, 0.19, P = 4.9e-07, N = 1956) (0.66, 0.016, P = 0.76, N = 859)
rs13427576(T)/2:56523619 CCDC85A (0.12, 0.16, P = 9e-06, N = 1956) (0.22, 0.0034, P = 0.95, N = 859)
rs11704820(G)/22:24912248 UPB1 (0.43, 0.16, P = 4.3e-07, N = 1956) (0.32, 0.0044, P = 0.93, N = 859)
rs77020847(G)/3:150016629 intergenic (0.013, 0.24, P = 2.1e-06, N = 1956) (0.014, 0.074, P = 0.71, N = 859)
rs6788347(C)/3:37754694* ITGA9 (0.5, 0.19, P = 4e-06, N = 1956) (0.52, 0.081, P = 0.1, N = 859)
rs4698029(G)/4:10312798* intergenic (0.19, -0.39, P = 3.5e-17, N = 1956) (0.21, -0.033, P = 0.56, N = 859)
rs13135526(A)/4:128932595* C4orf29 (0.51, -0.08, P = 9.1e-06, N = 1956) (0.61, 0.057, P = 0.25, N = 859)
rs2725772(T)/4:140438033* SETD7 (0.84, 0.21, P = 8.9e-08, N = 1956) (0.54, 0.08, P = 0.093, N = 859)
rs11735831(A)/4:9951591* SLC2A9 (0.22, -0.43, P = 1.4e-23, N = 1956) (0.45, -0.029, P = 0.54, N = 859)
rs33379(C)/5:171099634* intergenic (0.44, 0.16, P = 4e-06, N = 1956) (0.77, -0.033, P = 0.58, N = 859)
rs76129636(G)/6:130978833 intergenic (0.12, -0.41, P = 9.6e-06, N = 1956) (0.26, -0.0077, P = 0.89, N = 859)
rs113133874(T)/6:33379903 PHF1 (0.11, -0.42, P = 7e-06, N = 1956) (0.021, -0.051, P = 0.76, N = 859)
rs56286439(C)/7:14307105 DGKB (0.2, -0.13, P = 4.8e-06, N = 1956) (0.82, -0.0045, P = 0.94, N = 859)
rs2352451(G)/8:112781984 intergenic (0.74, 0.18, P = 5.3e-06, N = 1956) (0.78, -0.073, P = 0.21, N = 859)
rs7006208(A)/8:124157948 TBC1D31 (0.17, -0.96, P = 8e-06, N = 1956) (0.26, -0.087, P = 0.11, N = 859)
rs74795659(A)/8:73633099 KCNB2 (0.068, 0.15, P = 9e-06, N = 1956) (0.023, 0.24, P = 0.12, N = 859)
Results from Univariable Mendelian Randomization of Ureidopropionic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 22 0.078 (0.032- 0.12) P=0.00087 97 87 0 (0- 30.6) NA NA -0.0057 P=0.77
MR-Egger 22 0.089 (-0.0047- 0.18) P=0.077 97 87 0 (0- 30.6) 11 0.93 -0.0057 P=0.77
Weighted median 22 0.068 (-0.02- 0.16) P=0.13 97 87 0 (0- 30.6) NA NA -0.0057 P=0.77
Results from Univariable MRPRESSO of Ureidopropionic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.08 0.02 3.33 0
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Ureidopropionic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 16 0.07 (0.029- 0.11) P=0.00097 113 71 0 (0- 0) NA NA -0.011 P=0.64
MR-Egger 16 0.088 (-0.011- 0.19) P=0.1 113 71 0 (0- 0) 5.4 0.98 -0.011 P=0.64
Weighted median 16 0.068 (-0.028- 0.17) P=0.16 113 71 0 (0- 0) NA NA -0.011 P=0.64
Results from Univariable MRPRESSO of Ureidopropionic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.07 0.02 3.3 0
beta.exposure Outlier-corrected NA NA NA NA

Aminoadipic acid

Instruments Associations with Aminoadipic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Aminoadipic acid (Shin et al/Long et al) eGFR (CSSCD)
rs75602737(C)/1:112433228 KCND3 (0.09, -0.24, P = 3.5e-07, N = 1829) (0.049, 0.17, P = 0.12, N = 859)
rs16860185(A)/1:162294070* NOS1AP (0.099, 0.26, P = 6.7e-06, N = 1829) (0.012, 0.28, P = 0.22, N = 859)
rs6689907(T)/1:201701481 NAV1 (0.41, 0.2, P = 7.6e-06, N = 1829) (0.37, 0.054, P = 0.28, N = 859)
rs78186327(A)/1:26304015 PAFAH2 (0.27, -0.24, P = 7.8e-06, N = 1829) (0.034, 0.16, P = 0.21, N = 859)
rs61783628(T)/1:29209107 EPB41 (0.34, -0.18, P = 1.9e-06, N = 1829) (0.1, -0.097, P = 0.22, N = 859)
rs12414405(T)/10:12160108 DHTKD1 (0.11, -0.26, P = 2.5e-07, N = 1829) (0.021, -0.051, P = 0.76, N = 859)
rs12925619(C)/16:13529326 U91319.1 (0.9, -0.3, P = 7.3e-06, N = 1829) (0.98, -0.32, P = 0.033, N = 859)
rs1484093(T)/18:35705672 intergenic (0.71, 0.14, P = 8.4e-06, N = 1829) (0.95, -0.22, P = 0.055, N = 859)
rs9964369(T)/18:3773106 DLGAP1 (0.33, 0.14, P = 1.4e-07, N = 1829) (0.46, -0.0031, P = 0.95, N = 859)
rs1606889(G)/18:44214176* LOXHD1 (0.33, -0.18, P = 8.3e-06, N = 1829) (0.25, -0.079, P = 0.15, N = 859)
rs2161489(C)/19:17864452* FCHO1 (0.91, 0.3, P = 8.8e-06, N = 1829) (0.72, 0.064, P = 0.24, N = 859)
rs58855003(G)/2:150736508 intergenic (0.1, 0.25, P = 5.9e-06, N = 1829) (0.029, -0.19, P = 0.17, N = 859)
rs115962459(A)/2:216452525 AC012668.2 (0.017, -0.62, P = 7e-06, N = 1829) (0.024, -0.11, P = 0.48, N = 859)
rs3821665(A)/3:151133816* MED12L (0.51, -0.14, P = 2.4e-07, N = 1829) (0.3, -0.0077, P = 0.88, N = 859)
rs901212(A)/4:152913308 intergenic (0.29, -0.16, P = 4.5e-06, N = 1829) (0.38, 0.065, P = 0.18, N = 859)
rs2319481(T)/4:168502795 intergenic (0.61, 0.13, P = 3.1e-06, N = 1829) (0.3, 0.048, P = 0.36, N = 859)
rs793814(A)/4:185354974 IRF2 (0.63, -0.18, P = 5.5e-06, N = 1829) (0.78, -0.067, P = 0.26, N = 859)
rs6837120(T)/4:42649123 ATP8A1 (0.48, -0.12, P = 2.1e-06, N = 1829) (0.42, 0.099, P = 0.039, N = 859)
rs163450(T)/5:111868863 intergenic (0.077, -0.24, P = 5.1e-06, N = 1829) (0.2, -0.006, P = 0.92, N = 859)
rs4716060(A)/6:16310456 ATXN1 (0.27, -0.17, P = 2.4e-06, N = 1829) (0.72, -0.039, P = 0.46, N = 859)
rs876607(A)/6:16382649 ATXN1 (0.24, 0.17, P = 5e-06, N = 1829) (0.43, 0.081, P = 0.1, N = 859)
rs9464891(T)/6:16389631* ATXN1 (0.12, -0.25, P = 5e-06, N = 1829) (0.23, 0.096, P = 0.087, N = 859)
rs2490034(A)/6:3870889 intergenic (0.84, -0.26, P = 1.1e-06, N = 1829) (0.95, -0.047, P = 0.67, N = 859)
rs9361533(G)/6:80137259 intergenic (0.3, 0.2, P = 3.8e-06, N = 1829) (0.36, -0.052, P = 0.29, N = 859)
rs3800636(C)/7:137402718* DGKI (0.34, -0.19, P = 8.9e-06, N = 1829) (0.75, 0.0054, P = 0.93, N = 859)
rs3936106(A)/7:36731349 AOAH (0.18, 0.23, P = 6.4e-07, N = 1829) (0.32, 0.062, P = 0.23, N = 859)
rs7831286(G)/8:1122672 CTD-2281E23.2 (0.14, -0.15, P = 9.9e-06, N = 1829) (0.12, 0.02, P = 0.78, N = 859)
rs2125392(C)/9:76536127 intergenic (0.72, -0.19, P = 5e-06, N = 1829) (0.3, -0.02, P = 0.71, N = 859)
rs13295599(A)/9:87584025 NTRK2 (0.072, -0.41, P = 6.7e-06, N = 1829) (0.019, 0.19, P = 0.29, N = 859)
Results from Univariable Mendelian Randomization of Aminoadipic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 29 0.05 (-0.09- 0.19) P=0.48 24 38 19.1 (0- 72.3) NA NA -0.032 P=0.52
MR-Egger 29 0.21 (-0.28- 0.69) P=0.41 24 38 19.1 (0- 72.3) 39 0.059 -0.032 P=0.52
Weighted median 29 0.18 (0.0086- 0.35) P=0.04 24 38 19.1 (0- 72.3) NA NA -0.032 P=0.52
Results from Univariable MRPRESSO of Aminoadipic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.05 0.07 0.7 0.49
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Aminoadipic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 23 0.045 (-0.12- 0.21) P=0.6 24 30 18.3 (0- 76.1) NA NA -0.043 P=0.45
MR-Egger 23 0.26 (-0.32- 0.84) P=0.39 24 30 18.3 (0- 76.1) 31 0.066 -0.043 P=0.45
Weighted median 23 0.18 (-0.031- 0.39) P=0.095 24 30 18.3 (0- 76.1) NA NA -0.043 P=0.45
Results from Univariable MRPRESSO of Aminoadipic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.05 0.09 0.53 0.6
beta.exposure Outlier-corrected NA NA NA NA

2-Hydroxyglutarate

Instruments Associations with 2-Hydroxyglutarate & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region 2-Hydroxyglutarate (Shin et al/Long et al) eGFR (CSSCD)
rs6664149(T)/1:160600521 SLAMF1 (0.98, 0.081, P = 2.9e-05, N = 7824) (0.91, 0.053, P = 0.54, N = 859)
rs6540821(A)/1:214495298 SMYD2 (0.91, -0.24, P = 9.6e-06, N = 1945) (0.96, -0.0039, P = 0.98, N = 859)
rs11122423(A)/1:232257914 intergenic (0.26, -0.14, P = 8.9e-06, N = 1945) (0.59, 0.05, P = 0.3, N = 859)
rs1670157(T)/10:67667698 CTNNA3 (0.35, -0.022, P = 3e-05, N = 7824) (0.084, 0.12, P = 0.18, N = 859)
rs6484669(T)/11:11120287 intergenic (0.74, -0.02, P = 7.8e-06, N = 7824) (0.85, 0.057, P = 0.39, N = 859)
rs1647967(A)/11:130943681 intergenic (0.17, 0.018, P = 1.6e-05, N = 7824) (0.045, 0.1, P = 0.36, N = 859)
rs2949855(T)/11:93722540* HPRTP4 (0.19, -0.029, P = 1.1e-05, N = 7824) (0.12, 0.048, P = 0.52, N = 859)
rs7972211(A)/12:14269986* intergenic (0.76, -0.026, P = 2.6e-05, N = 7824) (0.74, -0.037, P = 0.49, N = 859)
rs4459375(T)/12:48356881 TMEM106C (0.53, 0.15, P = 6.9e-06, N = 1945) (0.54, -0.036, P = 0.47, N = 859)
rs36031950(TA)/12:49754105 DNAJC22 (0.064, 0.14, P = 1.6e-06, N = 1945) (0.64, 0.09, P = 0.067, N = 859)
rs16963602(T)/13:104501480* intergenic (0.99, -0.064, P = 3.5e-05, N = 7824) (0.89, -0.052, P = 0.5, N = 859)
rs7320880(A)/13:24350292 MIPEP (0.17, 0.018, P = 2.1e-05, N = 7824) (0.34, 0.063, P = 0.2, N = 859)
rs9544785(A)/13:78971070* RNF219-AS1 (0.36, -0.015, P = 6.6e-06, N = 7824) (0.31, 0.022, P = 0.67, N = 859)
rs1053019(A)/14:102808273 ZNF839 (0.061, 0.027, P = 3.7e-05, N = 7824) (0.17, -0.094, P = 0.16, N = 859)
rs4900072(T)/14:91636532 C14orf159 (0.35, 0.18, P = 2.9e-06, N = 1945) (0.14, -0.023, P = 0.75, N = 859)
rs12587020(T)/14:91678546 C14orf159 (0.57, -0.013, P = 4.2e-05, N = 7824) (0.18, 0.013, P = 0.84, N = 859)
rs12886872(T)/14:91678812* C14orf159 (0.44, 0.013, P = 4.8e-05, N = 7824) (0.82, -0.013, P = 0.84, N = 859)
rs1043239(A)/15:63618110* CA12 (0.42, 0.017, P = 1.4e-05, N = 7824) (0.61, 0.053, P = 0.28, N = 859)
rs937098(T)/15:68894559* CORO2B (0.14, -0.023, P = 1.4e-05, N = 7824) (0.53, -0.032, P = 0.5, N = 859)
rs2689255(C)/16:54222800* intergenic (0.56, 0.17, P = 6.9e-07, N = 1945) (0.55, -0.022, P = 0.65, N = 859)
rs57029062(GC)/16:72712738 RP5-991G20.1 (0.98, 0.15, P = 9e-06, N = 1945) (0.82, 0.023, P = 0.71, N = 859)
rs12716966(C)/16:83253620* CDH13 (0.71, -0.015, P = 1.4e-05, N = 7824) (0.53, -0.012, P = 0.8, N = 859)
rs16977497(A)/17:71021645* SLC39A11 (0.045, 0.054, P = 9.9e-06, N = 7824) (0.014, -0.055, P = 0.78, N = 859)
rs632953(A)/18:22000799 intergenic (0.9, -0.022, P = 1.2e-05, N = 7824) (0.77, -0.0061, P = 0.92, N = 859)
rs17654263(T)/18:28178839 intergenic (0.017, 0.055, P = 4.6e-05, N = 7824) (0.024, 0.12, P = 0.42, N = 859)
rs7566877(T)/2:139994754 intergenic (0.97, -0.04, P = 1.9e-05, N = 7824) (0.87, 0.026, P = 0.72, N = 859)
rs10196007(T)/2:145329033 AC010090.1 (0.82, -0.032, P = 7.6e-07, N = 7824) (0.64, -0.017, P = 0.74, N = 859)
rs78147778(C)/2:242682029 D2HGDH (0.24, 0.27, P = 3.7e-09, N = 1945) (0.22, -0.027, P = 0.64, N = 859)
rs6707874(G)/2:242709363 D2HGDH (0.36, 0.27, P = 2.1e-12, N = 1945) (0.71, 0.0033, P = 0.95, N = 859)
rs2314702(C)/2:4402929 intergenic (0.42, 0.022, P = 4.1e-05, N = 7824) (0.38, 0.056, P = 0.25, N = 859)
rs2555453(A)/2:64528233* intergenic (0.29, 0.014, P = 4.8e-05, N = 7824) (0.28, 0.079, P = 0.14, N = 859)
rs12106014(C)/20:10015761 ANKEF1 (0.55, 0.18, P = 6.4e-07, N = 1945) (0.79, 0.036, P = 0.54, N = 859)
rs17690784(A)/20:16929912 intergenic (0.89, -0.023, P = 2.2e-05, N = 7824) (0.98, -0.13, P = 0.5, N = 859)
rs6064820(T)/20:58206004 PHACTR3 (0.72, 0.015, P = 4e-06, N = 7824) (0.62, 0.064, P = 0.22, N = 859)
rs2426843(A)/20:58380845* PHACTR3 (0.93, -0.027, P = 3.3e-05, N = 7824) (0.28, 0.038, P = 0.48, N = 859)
rs670752(A)/3:107312980* BBX (0.3, 0.015, P = 1.9e-05, N = 7824) (0.28, -0.065, P = 0.21, N = 859)
rs1568101(T)/3:148590090 CPA3 (0.91, -0.025, P = 8.6e-06, N = 7824) (0.93, -0.042, P = 0.64, N = 859)
rs11915217(A)/3:174027279* intergenic (0.31, -0.18, P = 5.9e-06, N = 1945) (0.13, 0.074, P = 0.3, N = 859)
rs16832543(C)/3:181272496 SOX2-OT (0.9, -0.021, P = 3.1e-05, N = 7824) (0.8, 0.032, P = 0.6, N = 859)
rs12497680(A)/3:194573366 intergenic (0.075, -0.35, P = 4.6e-07, N = 1945) (0.081, 0.13, P = 0.15, N = 859)
rs73890624(A)/3:194752697 intergenic (0.02, -0.58, P = 1.1e-06, N = 1945) (0.15, -0.16, P = 0.022, N = 859)
rs17640193(A)/3:62569620* CADPS (0.07, 0.025, P = 2.1e-05, N = 7824) (0.03, 0.28, P = 0.049, N = 859)
rs2575453(A)/4:42685758 intergenic (0.75, 0.014, P = 4.8e-05, N = 7824) (0.53, 0.024, P = 0.64, N = 859)
rs6834396(C)/4:5403998* STK32B (0.17, 0.035, P = 1.9e-05, N = 7824) (0.71, -0.057, P = 0.28, N = 859)
rs344130(T)/4:77647590* SHROOM3 (0.37, -0.014, P = 1.6e-05, N = 7824) (0.56, 0.013, P = 0.79, N = 859)
rs6876258(A)/5:151191673 G3BP1 (0.18, 0.017, P = 4.7e-05, N = 7824) (0.34, 0.061, P = 0.24, N = 859)
rs10475642(A)/5:157325495* intergenic (0.46, -0.014, P = 1.2e-05, N = 7824) (0.6, 0.018, P = 0.71, N = 859)
rs7702827(C)/5:158879869 AC008703.1 (0.3, -0.015, P = 6.3e-06, N = 7824) (0.17, -0.02, P = 0.75, N = 859)
rs17060337(A)/5:161872504* intergenic (0.011, -0.1, P = 9e-06, N = 7824) (0.09, 0.041, P = 0.62, N = 859)
rs2122552(C)/5:165957260 intergenic (0.028, -0.065, P = 4.3e-05, N = 7824) (0.47, 0.0084, P = 0.86, N = 859)
rs6451885(C)/5:20715134* RP11-774D14.1 (0.85, -0.27, P = 5.4e-06, N = 1945) (0.9, 0.04, P = 0.62, N = 859)
rs7725624(A)/5:63010725* intergenic (0.086, -0.044, P = 3e-06, N = 7824) (0.23, 0.051, P = 0.36, N = 859)
rs114947484(C)/6:121292872 intergenic (0.058, 0.33, P = 3.9e-06, N = 1945) (0.023, -0.13, P = 0.44, N = 859)
rs11964335(A)/6:149658101 TAB2 (0.49, -0.014, P = 1.2e-05, N = 7824) (0.69, -0.023, P = 0.67, N = 859)
rs3757187(C)/6:28107654 ZKSCAN8 (0.22, 0.16, P = 1.9e-06, N = 1945) (0.32, -0.023, P = 0.66, N = 859)
rs9395212(C)/6:46726441* ANKRD66 (0.74, 0.23, P = 8.1e-07, N = 1945) (0.92, -0.082, P = 0.33, N = 859)
rs10806320(A)/6:86000465 RP11-30P6.1 (0.22, 0.17, P = 5.7e-06, N = 1945) (0.11, -0.024, P = 0.75, N = 859)
rs12174071(A)/6:98204538 intergenic (0.88, 0.022, P = 1.6e-05, N = 7824) (0.9, -0.035, P = 0.66, N = 859)
rs8176023(A)/7:142642596 KEL (0.93, -0.041, P = 2.5e-06, N = 7824) (0.99, -0.15, P = 0.52, N = 859)
rs17154808(T)/7:80788160 intergenic (0.016, -0.089, P = 4.4e-05, N = 7824) (0.13, -0.038, P = 0.59, N = 859)
rs933341(A)/7:83743619 SEMA3A (0.24, 0.017, P = 1.6e-06, N = 7824) (0.4, -0.01, P = 0.83, N = 859)
rs6558423(A)/8:1145909* CTD-2281E23.2 (0.2, -0.018, P = 1.8e-05, N = 7824) (0.42, -0.014, P = 0.78, N = 859)
rs11998124(T)/8:128085480 PCAT2 (0.053, 0.03, P = 4.9e-05, N = 7824) (0.45, -0.0036, P = 0.94, N = 859)
rs890519(A)/8:18905049* PSD3 (0.42, 0.015, P = 9.1e-06, N = 7824) (0.38, -0.028, P = 0.57, N = 859)
rs11991231(C)/8:19907912* intergenic (0.11, -0.39, P = 1e-08, N = 1945) (0.074, 0.11, P = 0.25, N = 859)
rs199605811(C)/8:54204040 intergenic (0.027, 0.3, P = 3.4e-06, N = 1945) (0.036, 0.15, P = 0.26, N = 859)
rs4837718(A)/9:122918241 intergenic (0.75, -0.014, P = 4.8e-05, N = 7824) (0.3, 0.089, P = 0.094, N = 859)
rs12341112(A)/9:22790893 RP11-399D6.2 (0.11, 0.021, P = 3.3e-05, N = 7824) (0.4, 0.065, P = 0.18, N = 859)
rs10966201(T)/9:24079188 intergenic (0.66, 0.015, P = 7.1e-06, N = 7824) (0.66, 0.031, P = 0.54, N = 859)
rs10816013(T)/9:8942036* PTPRD (0.14, -0.19, P = 8.6e-06, N = 1945) (0.035, -0.023, P = 0.86, N = 859)
rs1412466(T)/9:94282510 intergenic (0.23, 0.19, P = 2.8e-07, N = 1945) (0.29, 0.03, P = 0.58, N = 859)
rs4744059(C)/9:94337776 ROR2 (0.27, 0.18, P = 1.6e-07, N = 1945) (0.74, 0.009, P = 0.87, N = 859)
Results from Univariable Mendelian Randomization of 2-Hydroxyglutarate & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 72 0.011 (-0.087- 0.11) P=0.82 9.5 33 4.61 (0- 4.54) NA NA 0.0028 P=0.76
MR-Egger 72 -0.0027 (-0.15- 0.14) P=0.97 9.5 33 4.61 (0- 4.54) 53 0.93 0.0028 P=0.76
Weighted median 72 -0.06 (-0.24- 0.12) P=0.52 9.5 33 4.61 (0- 4.54) NA NA 0.0028 P=0.76
Results from Univariable MRPRESSO of 2-Hydroxyglutarate & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.01 0.05 0.23 0.82
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of 2-Hydroxyglutarate & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 46 0.072 (-0.038- 0.18) P=0.2 9.8 22 4.72 (0- 16.7) NA NA 0.0054 P=0.65
MR-Egger 46 0.047 (-0.12- 0.21) P=0.58 9.8 22 4.72 (0- 16.7) 34 0.86 0.0054 P=0.65
Weighted median 46 0.015 (-0.19- 0.22) P=0.89 9.8 22 4.72 (0- 16.7) NA NA 0.0054 P=0.65
Results from Univariable MRPRESSO of 2-Hydroxyglutarate & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.07 0.06 1.29 0.2
beta.exposure Outlier-corrected NA NA NA NA

3-Methyladipic acid

Instruments Associations with 3-Methyladipic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region 3-Methyladipic acid (Shin et al/Long et al) eGFR (CSSCD)
rs10908821(G)/1:161008535* TSTD1 (0.12, -0.19, P = 1.7e-07, N = 1947) (0.08, 0.19, P = 0.035, N = 859)
rs76552190(C)/14:28430652 intergenic (0.016, 0.65, P = 5.8e-06, N = 1947) (0.019, 0.35, P = 0.05, N = 859)
rs7143798(G)/14:33637107* NPAS3 (0.27, 0.2, P = 7.8e-06, N = 1947) (0.47, 0.015, P = 0.76, N = 859)
rs2460846(C)/15:36035176 DPH6-AS1 (0.41, -0.13, P = 5.7e-06, N = 1947) (0.63, -0.024, P = 0.62, N = 859)
rs11638741(C)/15:68734727* intergenic (0.98, -0.62, P = 7.7e-06, N = 1947) (0.83, -0.092, P = 0.14, N = 859)
rs1694246(G)/18:51401250* intergenic (0.89, -0.17, P = 7.6e-06, N = 1947) (0.73, -0.13, P = 0.022, N = 859)
rs637188(C)/18:58207240* intergenic (0.63, -0.11, P = 7.6e-06, N = 1947) (0.45, -0.00074, P = 0.99, N = 859)
rs536042327(CT)/2:188187872 AC007319.1 (0.01, 0.48, P = 8.7e-06, N = 1947) (0.4, -0.058, P = 0.24, N = 859)
rs6545578(C)/2:56784495* intergenic (0.84, 0.28, P = 1.2e-08, N = 1947) (0.97, -0.0061, P = 0.96, N = 859)
rs10805124(C)/4:44310296 KCTD8 (0.67, -0.2, P = 9.7e-06, N = 1947) (0.75, -0.028, P = 0.61, N = 859)
rs9292558(T)/5:34663830* RAI14 (0.075, -0.27, P = 3.9e-06, N = 1947) (0.052, 0.0091, P = 0.93, N = 859)
rs142983506(CAT)/6:126003666 RP1-293L8.2 (0.4, -0.13, P = 2.5e-06, N = 1947) (0.24, -0.0098, P = 0.86, N = 859)
rs1185568(A)/6:25834428* SLC17A1 (0.55, 0.4, P = 2.7e-30, N = 1947) (0.89, -0.039, P = 0.62, N = 859)
rs56144311(C)/7:21660173* DNAH11 (0.077, 0.26, P = 9.1e-06, N = 1947) (0.27, 0.048, P = 0.38, N = 859)
rs113283332(A)/7:36047671 intergenic (0.014, 0.73, P = 1e-06, N = 1947) (0.25, -0.012, P = 0.83, N = 859)
rs112212379(A)/7:36052900 intergenic (0.013, 0.69, P = 8.6e-06, N = 1947) (0.067, 0.11, P = 0.24, N = 859)
Results from Univariable Mendelian Randomization of 3-Methyladipic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 16 0.046 (-0.048- 0.14) P=0.34 31 25 14.6 (0- 82.7) NA NA 0.015 P=0.66
MR-Egger 16 0.013 (-0.16- 0.19) P=0.89 31 25 14.6 (0- 82.7) 19 0.18 0.015 P=0.66
Weighted median 16 -0.0021 (-0.13- 0.13) P=0.97 31 25 14.6 (0- 82.7) NA NA 0.015 P=0.66
Results from Univariable MRPRESSO of 3-Methyladipic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.05 0.05 0.96 0.35
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of 3-Methyladipic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 7 0.015 (-0.099- 0.13) P=0.8 22 7.9 23.8 (0- 86.3) NA NA 0.014 P=0.78
MR-Egger 7 -0.013 (-0.23- 0.21) P=0.91 22 7.9 23.8 (0- 86.3) 6.9 0.23 0.014 P=0.78
Weighted median 7 -0.011 (-0.16- 0.13) P=0.88 22 7.9 23.8 (0- 86.3) NA NA 0.014 P=0.78
Results from Univariable MRPRESSO of 3-Methyladipic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.02 0.06 0.26 0.8
beta.exposure Outlier-corrected NA NA NA NA

4-Pyridoxic acid

Instruments Associations with 4-Pyridoxic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region X4.pyridoxate (Shin et al/Long et al) eGFR (CSSCD)
rs66994930(G)/1:14288571 intergenic (0.098, 0.2, P = 3.7e-06, N = 1938) (0.097, -0.08, P = 0.32, N = 859)
rs7531679(T)/1:160634341 intergenic (0.9, 0.049, P = 9e-06, N = 7824) (0.96, -0.18, P = 0.17, N = 859)
rs670874(A)/1:182678213 RP11-317P15.3 (0.42, -0.17, P = 1.3e-07, N = 1938) (0.58, -0.042, P = 0.4, N = 859)
rs11119975(T)/1:212747722 ATF3 (0.15, -0.022, P = 1.4e-05, N = 7824) (0.02, -0.089, P = 0.6, N = 859)
rs11118327(T)/1:219692313* intergenic (0.36, -0.017, P = 2.4e-05, N = 7824) (0.067, 0.11, P = 0.22, N = 859)
rs11118329(A)/1:219701961 intergenic (0.64, 0.016, P = 4.6e-05, N = 7824) (0.93, -0.15, P = 0.12, N = 859)
rs1877156(G)/1:226313671 RP11-396C23.3 (0.59, 0.17, P = 8.3e-06, N = 1938) (0.36, 0.061, P = 0.23, N = 859)
rs77069129(T)/1:246823978 CNST (0.015, 0.51, P = 6.5e-06, N = 1938) (0.21, -0.022, P = 0.72, N = 859)
rs1392744(C)/1:37327225 GRIK3 (0.94, 0.31, P = 6e-06, N = 1938) (0.59, -0.025, P = 0.61, N = 859)
rs12025777(T)/1:41748897* RP11-399E6.1 (0.072, -0.33, P = 6.5e-06, N = 1938) (0.077, -0.091, P = 0.3, N = 859)
rs2125421(T)/1:96458324 RP11-147C23.1 (0.17, 0.02, P = 4.8e-05, N = 7824) (0.37, 0.06, P = 0.23, N = 859)
rs6696033(T)/1:97595784 DPYD (0.96, -0.055, P = 4.3e-06, N = 7824) (0.81, -0.041, P = 0.5, N = 859)
rs12573136(C)/10:28303355 RP11-218D6.4 (0.11, 0.32, P = 9.8e-06, N = 1938) (0.21, -0.064, P = 0.28, N = 859)
rs2123348(T)/10:4779211 intergenic (0.78, 0.018, P = 1.3e-05, N = 7824) (0.51, -0.047, P = 0.31, N = 859)
rs11214633(A)/11:113382519 intergenic (0.022, 0.053, P = 3e-05, N = 7824) (0.015, -0.038, P = 0.85, N = 859)
rs4755281(T)/11:44758398 RP11-45A12.2 (0.92, -0.03, P = 1.6e-05, N = 7824) (0.72, -0.036, P = 0.5, N = 859)
rs111633747(A)/11:80237332 RNU6-544P (0.092, -0.27, P = 8.6e-06, N = 1938) (0.07, -0.03, P = 0.75, N = 859)
rs55995000(T)/12:33046205 PKP2 (0.15, 0.3, P = 5e-07, N = 1938) (0.022, 0.23, P = 0.17, N = 859)
rs400120(A)/12:52831340* KRT75 (0.65, 0.019, P = 1.3e-06, N = 7824) (0.94, 0.074, P = 0.46, N = 859)
rs12814098(G)/12:5521537* intergenic (0.46, -0.17, P = 4.5e-07, N = 1938) (0.17, -0.0078, P = 0.9, N = 859)
rs35619331(A)/12:5526184 intergenic (0.21, 0.2, P = 6.8e-06, N = 1938) (0.043, 0.067, P = 0.58, N = 859)
rs2183242(C)/13:21271776* IL17D (0.042, 0.04, P = 3.5e-05, N = 7824) (0.11, 0.024, P = 0.76, N = 859)
rs1571295(T)/13:93116692 GPC5 (0.54, 0.014, P = 4.6e-05, N = 7824) (0.74, -0.027, P = 0.62, N = 859)
rs9556658(A)/13:97678251* intergenic (0.87, 0.023, P = 4e-05, N = 7824) (0.44, 0.034, P = 0.47, N = 859)
rs17750938(G)/14:94356089 intergenic (0.091, -0.25, P = 5.6e-06, N = 1938) (0.026, 0.063, P = 0.68, N = 859)
rs1370431(T)/15:61472687* RP11-39M21.1 (0.63, -0.017, P = 1.4e-05, N = 7824) (0.46, -0.056, P = 0.24, N = 859)
rs2572207(T)/15:66070693* DENND4A (0.25, -0.017, P = 4.3e-05, N = 7824) (0.38, 0.13, P = 0.0088, N = 859)
rs10500486(A)/16:64027542* intergenic (0.057, 0.034, P = 3.5e-05, N = 7824) (0.1, 0.064, P = 0.42, N = 859)
rs12931734(T)/16:8296086* intergenic (0.21, 0.022, P = 3.8e-06, N = 7824) (0.088, -0.00049, P = 1, N = 859)
rs8097(G)/16:8953081 CARHSP1 (0.65, 0.18, P = 1.3e-06, N = 1938) (0.35, -0.033, P = 0.53, N = 859)
rs13381663(T)/18:22860759 ZNF521 (0.79, -0.019, P = 3.7e-05, N = 7824) (0.72, -0.11, P = 0.042, N = 859)
rs28367036(C)/18:23029962 intergenic (0.093, 0.19, P = 3.3e-06, N = 1938) (0.059, -0.063, P = 0.52, N = 859)
rs12965568(A)/18:31034308 intergenic (0.34, 0.017, P = 1.4e-05, N = 7824) (0.36, -0.029, P = 0.56, N = 859)
rs1431844(T)/18:40071148 LINC00907 (0.026, 0.056, P = 2.3e-06, N = 7824) (0.11, 0.023, P = 0.76, N = 859)
rs12953402(T)/18:45852017* ZBTB7C (0.19, 0.021, P = 2.2e-05, N = 7824) (0.16, 0.061, P = 0.35, N = 859)
rs73936950(C)/19:45241350 intergenic (0.013, 0.72, P = 3.1e-06, N = 1938) (0.11, -0.0054, P = 0.95, N = 859)
rs6752425(T)/2:159323562* PKP4 (0.031, 0.097, P = 3.8e-06, N = 7824) (0.16, 0.092, P = 0.15, N = 859)
rs4674858(T)/2:224916420 intergenic (0.01, 0.15, P = 6.6e-06, N = 7824) (0.038, -0.17, P = 0.18, N = 859)
rs11125947(T)/2:63334101* RP11-511I11.1 (0.32, 0.018, P = 9.8e-06, N = 7824) (0.4, 0.011, P = 0.82, N = 859)
rs6013068(C)/20:49662264 intergenic (0.87, -0.19, P = 8.9e-06, N = 1938) (0.98, -0.12, P = 0.45, N = 859)
rs6127732(T)/20:54933104 FAM210B (0.052, 0.035, P = 2.8e-05, N = 7824) (0.019, -0.14, P = 0.44, N = 859)
rs11908680(A)/20:6681348 intergenic (0.96, -0.04, P = 2.8e-05, N = 7824) (0.91, 0.071, P = 0.41, N = 859)
rs4817986(T)/21:40465512* intergenic (0.26, 0.018, P = 2e-05, N = 7824) (0.13, 0.039, P = 0.58, N = 859)
rs5758632(T)/22:42578054 TCF20 (0.023, 0.053, P = 3e-05, N = 7824) (0.072, -0.055, P = 0.55, N = 859)
rs7510746(A)/22:49796563 intergenic (0.026, 0.6, P = 7.2e-06, N = 1938) (0.39, 0.049, P = 0.32, N = 859)
rs1350932(C)/3:110527632 intergenic (0.97, 0.5, P = 6.8e-07, N = 1938) (0.72, -0.093, P = 0.086, N = 859)
rs10001753(T)/4:27786481* intergenic (0.021, 0.75, P = 6.3e-06, N = 1938) (0.027, -0.15, P = 0.32, N = 859)
rs113718328(T)/5:178273952 intergenic (0.017, 0.58, P = 4.9e-06, N = 1938) (0.066, 0.056, P = 0.57, N = 859)
rs1878728(T)/6:118117328* intergenic (0.68, -0.017, P = 3.8e-05, N = 7824) (0.63, 0.098, P = 0.041, N = 859)
rs11758777(T)/6:153798688* intergenic (0.77, 0.018, P = 7.7e-06, N = 7824) (0.7, -0.056, P = 0.3, N = 859)
rs2197296(A)/6:160568997* SLC22A1 (0.25, 0.021, P = 4.7e-06, N = 7824) (0.12, -0.016, P = 0.83, N = 859)
rs7742715(A)/6:165298415* intergenic (0.36, 0.029, P = 6.6e-06, N = 7824) (0.38, -0.03, P = 0.54, N = 859)
rs9393768(A)/6:26885619* GUSBP2 (0.36, -0.017, P = 3.4e-05, N = 7824) (0.59, 0.00081, P = 0.99, N = 859)
rs4959343(T)/6:5669950* FARS2 (0.97, 0.37, P = 3.1e-06, N = 1938) (0.65, -0.027, P = 0.59, N = 859)
rs2643196(G)/6:74262700* RP11-505P4.7 (0.064, 0.3, P = 3.1e-06, N = 1938) (0.17, 0.045, P = 0.49, N = 859)
rs6464172(A)/7:151506039 PRKAG2 (0.45, 0.027, P = 2.9e-05, N = 7824) (0.63, -0.043, P = 0.38, N = 859)
rs4588750(A)/7:3403049 SDK1 (0.15, -0.23, P = 6.2e-06, N = 1938) (0.17, -0.0079, P = 0.9, N = 859)
rs11761829(A)/7:36556697* AOAH (0.96, -0.062, P = 4.9e-05, N = 7824) (0.64, 0.02, P = 0.69, N = 859)
rs4723965(A)/7:40540407 SUGCT (0.86, 0.23, P = 6.1e-06, N = 1938) (0.99, 0.047, P = 0.82, N = 859)
rs10950112(A)/7:67642170* RP5-945F2.3 (0.71, 0.017, P = 4.7e-05, N = 7824) (0.85, 0.0014, P = 0.98, N = 859)
rs6466258(A)/7:78143956 MAGI2 (0.57, 0.19, P = 9.8e-06, N = 1938) (0.83, -0.017, P = 0.79, N = 859)
rs7842609(A)/8:105697775* RP11-127H5.1 (0.48, -0.016, P = 3.4e-05, N = 7824) (0.67, 0.066, P = 0.19, N = 859)
rs11984592(C)/8:16367919* MSR1 (0.029, 0.49, P = 1.9e-06, N = 1938) (0.57, -0.035, P = 0.48, N = 859)
rs62490090(G)/8:16376078 MSR1 (0.029, 0.46, P = 6.3e-06, N = 1938) (0.011, 0.0045, P = 0.98, N = 859)
rs11204173(T)/8:21333478 intergenic (0.82, -0.025, P = 2.4e-05, N = 7824) (0.93, -0.022, P = 0.82, N = 859)
rs9314336(A)/8:26879523 intergenic (0.19, 0.033, P = 2.5e-05, N = 7824) (0.47, -0.014, P = 0.77, N = 859)
rs10099954(C)/8:27715891 intergenic (0.34, 0.18, P = 8.2e-06, N = 1938) (0.63, 0.025, P = 0.61, N = 859)
rs6988929(A)/8:38418517* RP11-675F6.4 (0.034, 0.089, P = 2.9e-05, N = 7824) (0.034, -0.089, P = 0.5, N = 859)
rs10820118(A)/9:105036692* intergenic (0.25, -0.018, P = 1.6e-05, N = 7824) (0.33, 0.006, P = 0.91, N = 859)
rs4740188(T)/9:134698342 RP11-323H21.3 (0.4, 0.016, P = 4.7e-05, N = 7824) (0.45, 0.017, P = 0.74, N = 859)
rs2383141(A)/9:20641181* intergenic (0.44, 0.016, P = 3.3e-05, N = 7824) (0.68, 0.01, P = 0.84, N = 859)
rs1927938(T)/9:73921879 TRPM3 (0.15, -0.024, P = 1.4e-06, N = 7824) (0.42, 0.014, P = 0.78, N = 859)
Results from Univariable Mendelian Randomization of 4-Pyridoxic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 72 -0.019 (-0.08- 0.042) P=0.54 11 38 0 (0- 25.9) NA NA -0.0057 P=0.55
MR-Egger 72 -0.0033 (-0.089- 0.082) P=0.94 11 38 0 (0- 25.9) 56 0.89 -0.0057 P=0.55
Weighted median 72 -0.034 (-0.14- 0.067) P=0.5 11 38 0 (0- 25.9) NA NA -0.0057 P=0.55
Results from Univariable MRPRESSO of 4-Pyridoxic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.02 0.03 -0.62 0.54
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of 4-Pyridoxic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 43 -0.013 (-0.081- 0.055) P=0.72 14 29 0.13 (0- 22.4) NA NA -0.0021 P=0.88
MR-Egger 43 -0.007 (-0.11- 0.1) P=0.9 14 29 0.13 (0- 22.4) 31 0.88 -0.0021 P=0.88
Weighted median 43 -0.007 (-0.13- 0.11) P=0.91 14 29 0.13 (0- 22.4) NA NA -0.0021 P=0.88
Results from Univariable MRPRESSO of 4-Pyridoxic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.03 -0.36 0.72
beta.exposure Outlier-corrected NA NA NA NA

Allantoin

Instruments Associations with Allantoin & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Allantoin (Shin et al/Long et al) eGFR (CSSCD)
rs12136839(A)/1:147232488 GJA5 (0.95, -0.037, P = 4.4e-05, N = 7824) (0.99, 0.11, P = 0.65, N = 859)
rs12132798(C)/1:216020536 USH2A (0.97, 0.061, P = 2.1e-06, N = 7824) (0.96, 0.057, P = 0.65, N = 859)
rs4579742(A)/1:239460167 intergenic (0.13, 0.029, P = 5.2e-06, N = 7824) (0.51, 0.065, P = 0.18, N = 859)
rs10799024(A)/1:30510681* RP11-111I12.1 (0.32, 0.019, P = 4.2e-05, N = 7824) (0.5, 0.011, P = 0.82, N = 859)
rs6659223(A)/1:39076845 intergenic (0.68, -0.019, P = 3.9e-05, N = 7824) (0.74, 0.12, P = 0.027, N = 859)
rs11211464(T)/1:47598032* CYP4A22-AS1 (0.69, 0.046, P = 4.7e-05, N = 7824) (0.68, 0.026, P = 0.61, N = 859)
rs2420679(A)/10:122035596* intergenic (0.26, 0.019, P = 4.1e-05, N = 7824) (0.19, -0.0079, P = 0.9, N = 859)
rs7917625(T)/10:19294417* intergenic (0.63, -0.018, P = 4.5e-05, N = 7824) (0.67, -0.004, P = 0.94, N = 859)
rs2388712(A)/10:8382503* intergenic (0.16, 0.024, P = 2.1e-05, N = 7824) (0.025, 0.0037, P = 0.98, N = 859)
rs7122363(T)/11:116449283 intergenic (0.17, -0.025, P = 4.5e-05, N = 7824) (0.12, -0.017, P = 0.82, N = 859)
rs496084(A)/11:128976002* ARHGAP32 (0.14, -0.063, P = 3.4e-05, N = 7824) (0.09, 0.057, P = 0.51, N = 859)
rs895797(A)/11:131264611* NTM (0.22, -0.02, P = 4e-05, N = 7824) (0.23, -0.019, P = 0.74, N = 859)
rs10492266(T)/12:115605697* intergenic (0.43, -0.017, P = 8.8e-06, N = 7824) (0.74, -0.024, P = 0.67, N = 859)
rs10771223(A)/12:25651899* IFLTD1 (0.78, 0.024, P = 2.9e-07, N = 7824) (0.7, 0.076, P = 0.15, N = 859)
rs11171691(A)/12:39699101 KIF21A (0.062, -0.088, P = 3.6e-05, N = 7824) (0.012, -0.047, P = 0.84, N = 859)
rs699634(T)/12:64546423* SRGAP1 (0.98, 0.23, P = 1.2e-05, N = 7824) (0.81, 0.044, P = 0.47, N = 859)
rs167277(A)/12:78483079* NAV3 (0.78, -0.021, P = 7.9e-06, N = 7824) (0.83, -0.049, P = 0.45, N = 859)
rs9301035(A)/13:106155027* DAOA-AS1 (0.43, 0.058, P = 1.8e-05, N = 7824) (0.88, -0.066, P = 0.37, N = 859)
rs7985555(T)/13:24660336* SPATA13 (0.55, -0.019, P = 4.3e-05, N = 7824) (0.43, 0.029, P = 0.54, N = 859)
rs11147404(T)/13:30539456 intergenic (0.89, 0.028, P = 8.7e-06, N = 7824) (0.81, 0.03, P = 0.64, N = 859)
rs2480555(T)/13:71887309* intergenic (0.85, 0.023, P = 4.2e-05, N = 7824) (0.75, 0.026, P = 0.65, N = 859)
rs17294670(T)/13:82296976* intergenic (0.96, -0.045, P = 3.2e-05, N = 7824) (0.89, -0.043, P = 0.57, N = 859)
rs2329277(T)/13:84131308 intergenic (0.17, 0.023, P = 2.2e-05, N = 7824) (0.29, -0.11, P = 0.038, N = 859)
rs9555859(T)/13:89862800* LINC01047 (0.97, -0.046, P = 3.7e-05, N = 7824) (0.92, -0.0043, P = 0.96, N = 859)
rs8020559(T)/14:52490690 NID2 (0.84, -0.024, P = 2.2e-05, N = 7824) (0.84, 0.012, P = 0.85, N = 859)
rs9323272(A)/14:55288924 intergenic (0.33, 0.045, P = 3.8e-05, N = 7824) (0.58, -0.029, P = 0.55, N = 859)
rs2293319(T)/15:31235357* MTMR10 (0.79, -0.022, P = 3.6e-06, N = 7824) (0.6, -0.0038, P = 0.94, N = 859)
rs2719726(A)/16:10779741* TEKT5 (0.52, 0.02, P = 1e-05, N = 7824) (0.3, 0.01, P = 0.85, N = 859)
rs9788926(A)/16:1807780* MAPK8IP3 (0.76, 0.019, P = 4.9e-05, N = 7824) (0.47, 0.00074, P = 0.99, N = 859)
rs11646986(T)/16:80855611 intergenic (0.82, -0.023, P = 2.1e-05, N = 7824) (0.77, 0.08, P = 0.16, N = 859)
rs2549842(T)/16:81023659* CMC2 (0.79, -0.021, P = 8.7e-06, N = 7824) (0.41, -0.023, P = 0.64, N = 859)
rs8064075(A)/16:87175636 C16orf95 (0.64, 0.047, P = 3.2e-05, N = 7824) (0.22, -0.002, P = 0.97, N = 859)
rs11658900(A)/17:27095485* FAM222B (0.56, -0.016, P = 1e-05, N = 7824) (0.096, -0.062, P = 0.46, N = 859)
rs8076290(A)/17:828023 NXN (0.048, 0.061, P = 3.9e-05, N = 7824) (0.33, 0.0063, P = 0.9, N = 859)
rs402573(T)/18:65248521* RP11-638L3.1 (0.15, -0.024, P = 1.8e-05, N = 7824) (0.21, 0.068, P = 0.23, N = 859)
rs8108144(T)/19:23373200 AC092329.1 (0.79, -0.023, P = 6.4e-07, N = 7824) (0.83, 0.04, P = 0.52, N = 859)
rs2972521(A)/19:48476964* BSPH1 (0.56, 0.02, P = 1.2e-05, N = 7824) (0.22, -0.012, P = 0.83, N = 859)
rs11564620(T)/19:48571072 PLA2G4C (0.9, -0.029, P = 3.4e-05, N = 7824) (0.77, 0.07, P = 0.21, N = 859)
rs4347830(A)/2:228058016* COL4A3 (0.34, 0.021, P = 2.7e-05, N = 7824) (0.58, 0.0042, P = 0.93, N = 859)
rs1431793(A)/2:236173098 intergenic (0.75, -0.022, P = 2.9e-06, N = 7824) (0.71, 0.12, P = 0.027, N = 859)
rs17398510(A)/2:35129873* AC012593.1 (0.88, -0.034, P = 2.2e-05, N = 7824) (0.98, -0.0049, P = 0.97, N = 859)
rs8184921(T)/21:22372723* NCAM2 (0.51, 0.017, P = 9.8e-06, N = 7824) (0.36, 0.096, P = 0.056, N = 859)
rs5767976(A)/22:48158986 RP11-191L9.4 (0.53, -0.045, P = 1.6e-05, N = 7824) (0.83, -0.045, P = 0.49, N = 859)
rs1499094(T)/3:1244434 CNTN6 (0.77, 0.021, P = 7.7e-06, N = 7824) (0.61, 0.046, P = 0.34, N = 859)
rs4894514(A)/3:171558472* TMEM212 (0.53, 0.018, P = 3.6e-05, N = 7824) (0.68, -0.021, P = 0.69, N = 859)
rs6804104(A)/3:1756711* intergenic (0.85, -0.026, P = 1.5e-05, N = 7824) (0.75, 0.04, P = 0.46, N = 859)
rs1799412(C)/3:40210125 MYRIP (0.84, -0.026, P = 2.3e-06, N = 7824) (0.82, 0.066, P = 0.29, N = 859)
rs1320934(A)/3:61884650 PTPRG (0.96, 0.12, P = 1.5e-06, N = 7824) (0.69, -0.039, P = 0.44, N = 859)
rs9834988(T)/3:79630364* ROBO1 (0.53, 0.018, P = 8e-07, N = 7824) (0.48, 0.011, P = 0.82, N = 859)
rs4698025(A)/4:10305157* intergenic (0.3, 0.019, P = 2.2e-05, N = 7824) (0.27, -0.013, P = 0.81, N = 859)
rs312360(T)/4:19259131* RP11-3J1.1 (0.82, 0.022, P = 4.7e-05, N = 7824) (0.88, -0.043, P = 0.54, N = 859)
rs544236(T)/4:20235828* intergenic (0.82, 0.023, P = 2.2e-05, N = 7824) (0.82, 0.027, P = 0.67, N = 859)
rs17553672(T)/4:24839564* CCDC149 (0.82, 0.023, P = 2.1e-05, N = 7824) (0.97, 0.2, P = 0.2, N = 859)
rs13117183(C)/4:43156439* RP11-395F4.1 (0.14, -0.028, P = 1.3e-05, N = 7824) (0.022, -0.25, P = 0.13, N = 859)
rs4705317(A)/5:148500566* RN7SKP145 (0.61, 0.019, P = 2.6e-05, N = 7824) (0.36, 0.064, P = 0.19, N = 859)
rs7723208(T)/5:174038768* intergenic (0.18, 0.023, P = 4.3e-05, N = 7824) (0.2, -0.0099, P = 0.87, N = 859)
rs16867673(A)/5:38730230 intergenic (0.96, 0.044, P = 3.4e-05, N = 7824) (0.86, 0.079, P = 0.26, N = 859)
rs27223(T)/5:59752640* SETP21 (0.64, -0.019, P = 3.5e-05, N = 7824) (0.89, -0.12, P = 0.12, N = 859)
rs2068093(C)/6:114097900* U3 (0.43, 0.044, P = 1.4e-05, N = 7824) (0.52, -0.055, P = 0.26, N = 859)
rs12203935(A)/6:121276377* intergenic (0.17, -0.023, P = 3.5e-05, N = 7824) (0.027, 0.08, P = 0.59, N = 859)
rs4869723(T)/6:151579432* AKAP12 (0.44, -0.016, P = 4e-05, N = 7824) (0.56, 0.068, P = 0.16, N = 859)
rs2064599(T)/6:47259683* TNFRSF21 (0.54, 0.016, P = 2e-05, N = 7824) (0.1, 0.018, P = 0.82, N = 859)
rs972709(A)/6:66255788 EYS (0.65, 0.048, P = 6.7e-06, N = 7824) (0.89, -0.07, P = 0.37, N = 859)
rs2875567(A)/6:90100643* RRAGD (0.89, 0.027, P = 2.2e-05, N = 7824) (0.83, 0.053, P = 0.43, N = 859)
rs12189555(A)/6:91104402 intergenic (0.77, 0.021, P = 5.1e-06, N = 7824) (0.94, 0.07, P = 0.48, N = 859)
rs9377577(A)/6:96666785 FUT9 (0.21, -0.052, P = 2.2e-05, N = 7824) (0.07, -0.14, P = 0.14, N = 859)
rs10953522(A)/7:106588426 intergenic (0.53, 0.018, P = 4.3e-05, N = 7824) (0.64, 0.067, P = 0.18, N = 859)
rs12718598(T)/7:50428445* IKZF1 (0.52, 0.018, P = 1.5e-06, N = 7824) (0.48, 0.01, P = 0.83, N = 859)
rs10505632(T)/8:135892340* RP11-1057B8.2 (0.17, -0.023, P = 3e-05, N = 7824) (0.083, 0.072, P = 0.39, N = 859)
rs965525(T)/8:22579627 PEBP4 (0.71, -0.019, P = 4.1e-05, N = 7824) (0.5, 0.09, P = 0.055, N = 859)
rs17069778(A)/8:4121520* CSMD1 (0.94, 0.034, P = 3.5e-05, N = 7824) (0.82, 0.0015, P = 0.98, N = 859)
rs1447307(T)/8:94286040 RP11-388K12.2 (0.23, -0.021, P = 5.7e-06, N = 7824) (0.21, 0.00097, P = 0.99, N = 859)
rs2781102(A)/9:122558384* intergenic (0.52, 0.016, P = 4.3e-05, N = 7824) (0.66, -0.015, P = 0.77, N = 859)
rs12352353(A)/9:4743341* AK3 (0.88, -0.027, P = 2.2e-05, N = 7824) (0.87, 0.0049, P = 0.94, N = 859)
Results from Univariable Mendelian Randomization of Allantoin & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 74 -0.011 (-0.31- 0.29) P=0.94 2.4 2.3 0 (0- 26.7) NA NA -0.0048 P=0.64
MR-Egger 74 0.072 (-0.4- 0.55) P=0.77 2.4 2.3 0 (0- 26.7) 60 0.83 -0.0048 P=0.64
Weighted median 74 0.18 (-0.35- 0.71) P=0.5 2.4 2.3 0 (0- 26.7) NA NA -0.0048 P=0.64
Results from Univariable MRPRESSO of Allantoin & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.15 -0.07 0.94
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Allantoin & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 27 -0.28 (-0.89- 0.32) P=0.36 3 1 4.65e-05 (0- 74.7) NA NA -0.029 P=0.22
MR-Egger 27 0.28 (-0.79- 1.4) P=0.61 3 1 4.65e-05 (0- 74.7) 31 0.18 -0.029 P=0.22
Weighted median 27 -0.22 (-1.1- 0.64) P=0.62 3 1 4.65e-05 (0- 74.7) NA NA -0.029 P=0.22
Results from Univariable MRPRESSO of Allantoin & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.28 0.31 -0.91 0.37
beta.exposure Outlier-corrected NA NA NA NA

2-Hydroxybutyric acid

Instruments Associations with 2-Hydroxybutyric acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region 2-Hydroxybutyric acid (Shin et al/Long et al) eGFR (CSSCD)
rs1517432(T)/1:103100912* intergenic (0.57, 0.011, P = 4.7e-05, N = 7824) (0.14, -0.065, P = 0.35, N = 859)
rs12240227(A)/1:168586539 intergenic (0.02, 0.085, P = 4.1e-05, N = 7824) (0.15, 0.013, P = 0.85, N = 859)
rs627629(T)/1:238255344* intergenic (0.99, -0.11, P = 1e-05, N = 7824) (0.78, -0.057, P = 0.31, N = 859)
rs3956419(A)/1:83836149 intergenic (0.25, 0.017, P = 2.3e-05, N = 7824) (0.056, 0.026, P = 0.81, N = 859)
rs7895521(A)/10:55856021* PCDH15 (0.24, -0.014, P = 3.6e-05, N = 7824) (0.075, -0.018, P = 0.85, N = 859)
rs224069(T)/10:64508126* intergenic (0.6, 0.011, P = 2.4e-05, N = 7824) (0.93, 0.029, P = 0.77, N = 859)
rs10822058(A)/10:64523582* intergenic (0.55, -0.011, P = 3.4e-05, N = 7824) (0.9, 0.0063, P = 0.94, N = 859)
rs1509960(A)/10:64620689 EGR2 (0.083, 0.026, P = 9.6e-06, N = 7824) (0.095, -0.16, P = 0.059, N = 859)
rs7100223(T)/10:72788676* intergenic (0.55, 0.011, P = 3.4e-05, N = 7824) (0.45, -0.0041, P = 0.93, N = 859)
rs11255096(T)/10:7418393 SFMBT2 (0.61, 0.012, P = 1e-05, N = 7824) (0.41, 0.018, P = 0.72, N = 859)
rs1832826(T)/10:92122362* intergenic (0.92, -0.021, P = 3.8e-05, N = 7824) (0.97, -0.17, P = 0.27, N = 859)
rs12808830(A)/11:134735855 intergenic (0.93, -0.025, P = 4.6e-05, N = 7824) (0.97, -0.004, P = 0.98, N = 859)
rs4388837(T)/11:26722592 SLC5A12 (0.98, 0.11, P = 4.2e-06, N = 7824) (0.84, 0.13, P = 0.045, N = 859)
rs10161318(T)/12:107551308* intergenic (0.96, 0.032, P = 5.1e-06, N = 7824) (0.74, 0.022, P = 0.69, N = 859)
rs3851600(C)/12:13040944* GPRC5A (0.78, -0.015, P = 1.3e-05, N = 7824) (0.65, -0.016, P = 0.74, N = 859)
rs17122565(T)/12:48412410* RP1-228P16.5 (0.25, -0.016, P = 2.8e-06, N = 7824) (0.4, 0.056, P = 0.25, N = 859)
rs7985908(T)/13:100186218* TM9SF2 (0.12, 0.019, P = 1e-05, N = 7824) (0.18, -0.033, P = 0.6, N = 859)
rs4771522(A)/13:106774078* intergenic (0.58, 0.011, P = 2.6e-05, N = 7824) (0.66, -0.001, P = 0.98, N = 859)
rs2146690(A)/13:108403984 FAM155A (0.85, -0.025, P = 1.2e-05, N = 7824) (0.8, 0.049, P = 0.42, N = 859)
rs4943375(T)/13:31985820* intergenic (0.57, 0.012, P = 1.6e-05, N = 7824) (0.92, -0.071, P = 0.41, N = 859)
rs9532194(A)/13:38836709* intergenic (0.19, 0.017, P = 2.3e-05, N = 7824) (0.02, -0.16, P = 0.37, N = 859)
rs4883910(A)/13:72997704* intergenic (0.56, -0.011, P = 3.4e-05, N = 7824) (0.62, 0.017, P = 0.73, N = 859)
rs7141156(A)/14:33825093* NPAS3 (0.3, -0.015, P = 1.8e-05, N = 7824) (0.31, -0.063, P = 0.22, N = 859)
rs17101344(A)/14:33970832* NPAS3 (0.78, -0.019, P = 5.6e-08, N = 7824) (0.91, 0.1, P = 0.23, N = 859)
rs1959592(A)/14:43969823 intergenic (0.6, 0.012, P = 1.4e-05, N = 7824) (0.6, 0.014, P = 0.78, N = 859)
rs7401717(A)/14:54393139* intergenic (0.042, 0.037, P = 1.2e-05, N = 7824) (0.3, 0.08, P = 0.13, N = 859)
rs9652375(C)/14:76781841* ESRRB (0.57, 0.011, P = 3.1e-05, N = 7824) (0.53, -0.055, P = 0.25, N = 859)
rs2680344(A)/15:73653485 HCN4 (0.78, -0.015, P = 2.1e-05, N = 7824) (0.39, 0.027, P = 0.59, N = 859)
rs7205092(T)/16:80945538* intergenic (0.79, -0.015, P = 3.4e-05, N = 7824) (0.77, 0.059, P = 0.3, N = 859)
rs872745(A)/16:82578355* intergenic (0.41, -0.013, P = 4.9e-07, N = 7824) (0.46, -0.05, P = 0.31, N = 859)
rs9303041(T)/17:11786569 DNAH9 (0.17, -0.017, P = 4.2e-05, N = 7824) (0.17, -0.0091, P = 0.88, N = 859)
rs1684660(A)/17:42108351* LSM12 (0.54, -0.012, P = 1.3e-05, N = 7824) (0.14, 0.074, P = 0.28, N = 859)
rs473719(C)/18:22086993* intergenic (0.49, -0.012, P = 1.1e-05, N = 7824) (0.15, -0.089, P = 0.19, N = 859)
rs7228646(C)/18:23027460 intergenic (0.042, -0.031, P = 1.3e-05, N = 7824) (0.13, -0.052, P = 0.47, N = 859)
rs1791285(T)/18:57366183 CCBE1 (0.85, 0.019, P = 2.6e-05, N = 7824) (0.86, 0.069, P = 0.34, N = 859)
rs8085727(T)/18:72768073* ZNF407 (0.82, -0.015, P = 1.4e-05, N = 7824) (0.72, -0.031, P = 0.56, N = 859)
rs304729(A)/19:44084403* XRCC1 (0.2, 0.015, P = 9.2e-06, N = 7824) (0.15, -0.03, P = 0.65, N = 859)
rs729253(T)/2:117932237 intergenic (0.58, 0.026, P = 7.5e-06, N = 7824) (0.19, 0.019, P = 0.75, N = 859)
rs13430006(T)/2:219113089* ARPC2 (0.5, -0.012, P = 1.4e-05, N = 7824) (0.11, 0.1, P = 0.19, N = 859)
rs12470565(T)/2:240640112 intergenic (0.57, 0.017, P = 1.1e-06, N = 7824) (0.64, 0.03, P = 0.56, N = 859)
rs1260326(T)/2:27730940* GCKR (0.4, 0.014, P = 7.9e-08, N = 7824) (0.14, -0.019, P = 0.79, N = 859)
rs3817588(T)/2:27731212* GCKR (0.81, 0.016, P = 4.6e-06, N = 7824) (0.97, 0.1, P = 0.46, N = 859)
rs4477896(T)/2:33952413* MYADML (0.22, 0.015, P = 2.8e-05, N = 7824) (0.38, -0.008, P = 0.88, N = 859)
rs4521014(A)/2:35539417* intergenic (0.4, -0.017, P = 5.2e-07, N = 7824) (0.36, 0.045, P = 0.37, N = 859)
rs4670465(T)/2:35621644 intergenic (0.55, -0.014, P = 6.4e-08, N = 7824) (0.8, 0.056, P = 0.34, N = 859)
rs2861960(T)/2:80185514 CTNNA2 (0.87, -0.019, P = 8e-06, N = 7824) (0.94, -0.087, P = 0.39, N = 859)
rs7579456(T)/2:84362453* intergenic (0.42, -0.012, P = 1.3e-05, N = 7824) (0.73, -0.027, P = 0.62, N = 859)
rs16991515(A)/20:5915922 TRMT6 (0.95, 0.027, P = 4e-05, N = 7824) (0.97, -0.097, P = 0.45, N = 859)
rs1560921(T)/3:10674308* ATP2B2 (0.61, 0.011, P = 2.4e-05, N = 7824) (0.56, 0.015, P = 0.76, N = 859)
rs9847650(A)/3:137301920 intergenic (0.54, 0.011, P = 3e-05, N = 7824) (0.29, 0.037, P = 0.49, N = 859)
rs4683620(A)/3:141410864* RP11-340E6.1 (0.093, -0.025, P = 3.1e-05, N = 7824) (0.1, 0.075, P = 0.35, N = 859)
rs4680105(A)/3:153553043* RP11-23D24.2 (0.89, 0.019, P = 2.1e-05, N = 7824) (0.98, -0.037, P = 0.82, N = 859)
rs7614971(A)/3:34187468 intergenic (0.94, -0.025, P = 4.3e-05, N = 7824) (0.9, -0.061, P = 0.45, N = 859)
rs11721212(T)/3:53639939* CACNA1D (0.77, 0.014, P = 3.3e-05, N = 7824) (0.89, -0.078, P = 0.32, N = 859)
rs4697735(T)/4:10256289 AC006499.8 (0.017, 0.096, P = 5e-05, N = 7824) (0.31, 0.021, P = 0.68, N = 859)
rs4692861(A)/4:169061427 ANXA10 (0.41, -0.012, P = 1.5e-05, N = 7824) (0.53, 0.05, P = 0.3, N = 859)
rs2130909(A)/4:187588477 FAT1 (0.29, -0.018, P = 6.8e-06, N = 7824) (0.5, 0.046, P = 0.35, N = 859)
rs12503695(C)/4:86925463* ARHGAP24 (0.22, 0.029, P = 2.5e-05, N = 7824) (0.48, 0.031, P = 0.52, N = 859)
rs5745297(A)/5:10680997* DAP (0.08, -0.022, P = 2e-05, N = 7824) (0.013, 0.075, P = 0.72, N = 859)
rs40104(T)/5:115795101* SEMA6A (0.91, 0.029, P = 2.6e-05, N = 7824) (0.75, -0.056, P = 0.32, N = 859)
rs163920(T)/5:141397272* GNPDA1 (0.067, 0.029, P = 1.2e-05, N = 7824) (0.061, 0.16, P = 0.11, N = 859)
rs864969(A)/5:56364907* intergenic (0.8, 0.015, P = 1.4e-05, N = 7824) (0.71, 0.071, P = 0.18, N = 859)
rs287884(A)/6:157124080* ARID1B (0.44, -0.014, P = 2.4e-05, N = 7824) (0.54, 0.035, P = 0.47, N = 859)
rs9347438(T)/6:161083633* LPA (0.44, 0.011, P = 3.9e-05, N = 7824) (0.55, -0.01, P = 0.83, N = 859)
rs9477241(T)/6:16873952* intergenic (0.026, 0.041, P = 4.5e-05, N = 7824) (0.15, 0.00062, P = 0.99, N = 859)
rs6934188(T)/6:19611159* RP1-167F1.2 (0.5, 0.011, P = 3.8e-05, N = 7824) (0.48, -0.031, P = 0.53, N = 859)
rs2067997(T)/6:35471246* TULP1 (0.87, -0.021, P = 9.4e-07, N = 7824) (0.8, 0.076, P = 0.21, N = 859)
rs2073465(A)/6:74229792* EEF1A1 (0.81, 0.014, P = 4.2e-05, N = 7824) (0.91, -0.18, P = 0.04, N = 859)
rs9389466(A)/6:96245744* intergenic (0.028, 0.043, P = 8e-06, N = 7824) (0.057, -0.3, P = 0.0046, N = 859)
rs12542467(A)/8:124624056* CTD-2552K11.2 (0.54, 0.011, P = 4.9e-05, N = 7824) (0.25, -0.092, P = 0.1, N = 859)
rs13282582(T)/8:128577283* intergenic (0.045, 0.059, P = 2.4e-05, N = 7824) (0.046, 0.14, P = 0.23, N = 859)
rs12677068(T)/8:29787927* FAM183CP (0.97, 0.038, P = 3.3e-05, N = 7824) (0.98, 0.14, P = 0.45, N = 859)
rs2719320(A)/8:34187152* RP1-84O15.2 (0.81, -0.015, P = 2.4e-05, N = 7824) (0.52, -2.7e-05, P = 1, N = 859)
rs4376550(T)/9:109178658* RP11-308N19.1 (0.34, -0.014, P = 4.5e-05, N = 7824) (0.48, 0.0021, P = 0.97, N = 859)
rs7867311(A)/9:11790536* intergenic (0.59, 0.014, P = 1.7e-05, N = 7824) (0.69, -0.0011, P = 0.98, N = 859)
rs10975189(T)/9:5590953 RP11-574F11.3 (0.059, 0.026, P = 1.9e-05, N = 7824) (0.072, 0.085, P = 0.37, N = 859)
rs952045(T)/9:73161881* TRPM3 (0.95, -0.029, P = 2e-05, N = 7824) (0.77, -0.046, P = 0.42, N = 859)
rs2224580(A)/9:8142291* intergenic (0.22, 0.016, P = 1.1e-05, N = 7824) (0.34, 0.033, P = 0.5, N = 859)
rs11788042(A)/9:81650381 KRT18P24 (0.24, 0.016, P = 1.9e-06, N = 7824) (0.59, -0.0091, P = 0.86, N = 859)
rs876927(T)/9:88117073* intergenic (0.21, 0.016, P = 5.4e-06, N = 7824) (0.29, -0.1, P = 0.059, N = 859)
rs2841680(A)/9:96161642 intergenic (0.77, 0.015, P = 2e-05, N = 7824) (0.82, 0.068, P = 0.3, N = 859)
Results from Univariable Mendelian Randomization of 2-Hydroxybutyric acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 81 0.26 (-0.16- 0.69) P=0.23 0.81 0.84 0 (0- 29.5) NA NA -0.022 P=0.032
MR-Egger 81 0.79 (0.14- 1.5) P=0.021 0.81 0.84 0 (0- 29.5) 66 0.85 -0.022 P=0.032
Weighted median 81 0.41 (-0.29- 1.1) P=0.25 0.81 0.84 0 (0- 29.5) NA NA -0.022 P=0.032
Results from Univariable MRPRESSO of 2-Hydroxybutyric acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.26 0.22 1.2 0.23
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of 2-Hydroxybutyric acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 25 0.45 (-0.064- 0.97) P=0.086 1 0.32 0 (0- 37.1) NA NA -0.012 P=0.5
MR-Egger 25 0.67 (-0.22- 1.6) P=0.15 1 0.32 0 (0- 37.1) 16 0.87 -0.012 P=0.5
Weighted median 25 0.31 (-0.58- 1.2) P=0.5 1 0.32 0 (0- 37.1) NA NA -0.012 P=0.5
Results from Univariable MRPRESSO of 2-Hydroxybutyric acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.45 0.26 1.72 0.1
beta.exposure Outlier-corrected NA NA NA NA

Beta-Alanine

Instruments Associations with Beta-Alanine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Beta-Alanine (Shin et al/Long et al) eGFR (CSSCD)
rs4655453(T)/1:213785004* AL592063.1 (0.091, 0.8, P = 3e-06, N = 1950) (0.031, -0.083, P = 0.54, N = 859)
rs34954945(T)/1:34259238 CSMD2 (0.065, 0.17, P = 2.1e-06, N = 1950) (0.16, 0.097, P = 0.15, N = 859)
rs10915665(T)/1:4093717 intergenic (0.13, -0.2, P = 6.9e-06, N = 1950) (0.3, 0.013, P = 0.81, N = 859)
rs7911319(G)/10:133273482 intergenic (0.083, 0.58, P = 3.7e-06, N = 1950) (0.073, -0.088, P = 0.35, N = 859)
rs79254065(A)/10:71415238 intergenic (0.015, -0.26, P = 1.6e-06, N = 1950) (0.097, -0.13, P = 0.11, N = 859)
rs12560861(G)/13:21073518 CRYL1 (0.2, -0.46, P = 4e-06, N = 1950) (0.15, 0.0028, P = 0.97, N = 859)
rs7150563(C)/14:98762345* intergenic (0.4, -0.29, P = 2.8e-06, N = 1950) (0.37, 0.076, P = 0.13, N = 859)
rs4558436(C)/16:7336322 RBFOX1 (0.88, -0.66, P = 5.5e-06, N = 1950) (0.92, -0.27, P = 0.0028, N = 859)
rs62079516(G)/17:80341546 RP13-20L14.1 (0.19, -0.27, P = 8e-06, N = 1950) (0.085, -0.048, P = 0.58, N = 859)
rs62132077(C)/2:17766094* VSNL1 (0.017, 0.17, P = 4.7e-06, N = 1950) (0.028, 0.25, P = 0.08, N = 859)
rs2327549(T)/20:12354153* intergenic (0.98, 0.81, P = 7.5e-06, N = 1950) (0.54, 0.063, P = 0.19, N = 859)
rs5753833(T)/22:32355076 YWHAH (0.17, -0.28, P = 7.5e-06, N = 1950) (0.096, -0.018, P = 0.83, N = 859)
rs6800284(T)/3:30758956* intergenic (0.44, 0.22, P = 1.2e-21, N = 1950) (0.79, 0.0081, P = 0.89, N = 859)
rs10676924(TTG)/3:30798395 GADL1 (0.78, 0.35, P = 1.3e-06, N = 1950) (0.96, 0.31, P = 0.011, N = 859)
rs58714970(TC)/3:30808056* GADL1 (0.43, -0.17, P = 7.4e-07, N = 1950) (0.47, 0.011, P = 0.83, N = 859)
rs9968671(T)/5:39141990* FYB (0.2, -0.17, P = 6.8e-06, N = 1950) (0.37, -0.057, P = 0.28, N = 859)
rs535532587(CA)/5:79976241 MSH3 (0.066, 0.52, P = 7.1e-06, N = 1950) (0.18, 0.017, P = 0.79, N = 859)
rs7037419(T)/9:103103281 TEX10 (0.14, 0.16, P = 4.3e-06, N = 1950) (0.16, 0.015, P = 0.82, N = 859)
rs12341435(G)/9:38575602 ANKRD18A (0.027, -0.65, P = 2.4e-06, N = 1950) (0.068, 0.017, P = 0.86, N = 859)
Results from Univariable Mendelian Randomization of Beta-Alanine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 19 0.07 (-0.02- 0.16) P=0.13 65 60 28.1 (0- 83.2) NA NA 0.013 P=0.72
MR-Egger 19 0.043 (-0.13- 0.22) P=0.64 65 60 28.1 (0- 83.2) 27 0.065 0.013 P=0.72
Weighted median 19 0.064 (-0.048- 0.18) P=0.26 65 60 28.1 (0- 83.2) NA NA 0.013 P=0.72
Results from Univariable MRPRESSO of Beta-Alanine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.07 0.05 1.53 0.14
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Beta-Alanine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 12 0.11 (-0.031- 0.25) P=0.13 65 38 37.9 (0- 83.2) NA NA 0.033 P=0.61
MR-Egger 12 0.032 (-0.29- 0.35) P=0.85 65 38 37.9 (0- 83.2) 17 0.069 0.033 P=0.61
Weighted median 12 0.0066 (-0.16- 0.17) P=0.94 65 38 37.9 (0- 83.2) NA NA 0.033 P=0.61
Results from Univariable MRPRESSO of Beta-Alanine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.11 0.07 1.52 0.16
beta.exposure Outlier-corrected NA NA NA NA

Betaine

Instruments Associations with Betaine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Betaine (Shin et al/Long et al) eGFR (CSSCD)
rs1538475(A)/1:187534056 FDPSP1 (0.68, 0.01, P = 2.4e-05, N = 7824) (0.77, 0.036, P = 0.53, N = 859)
rs12569219(A)/1:203762990* ZBED6 (0.16, -0.012, P = 5.8e-06, N = 7824) (0.14, -0.064, P = 0.35, N = 859)
rs650264(T)/1:20911830 CDA (0.097, -0.015, P = 2.1e-05, N = 7824) (0.25, 0.065, P = 0.24, N = 859)
rs943523(A)/1:53947922 intergenic (0.89, -0.014, P = 4.7e-05, N = 7824) (0.44, 0.081, P = 0.094, N = 859)
rs232782(A)/1:59128237* MYSM1 (0.17, 0.011, P = 3e-05, N = 7824) (0.41, -0.026, P = 0.57, N = 859)
rs7896866(A)/10:101339828 intergenic (0.3, 0.011, P = 8.3e-06, N = 7824) (0.42, -0.046, P = 0.35, N = 859)
rs1926205(A)/10:20210789 PLXDC2 (0.029, 0.38, P = 4.9e-06, N = 1958) (0.065, 0.075, P = 0.45, N = 859)
rs7126003(T)/11:10888433* ZBED5-AS1 (0.63, 0.018, P = 2.6e-06, N = 7824) (0.79, 0.013, P = 0.82, N = 859)
rs7931762(A)/11:43197753* HNRNPKP3 (0.84, -0.011, P = 3.6e-05, N = 7824) (0.81, -0.01, P = 0.87, N = 859)
rs11111121(A)/12:102397730 DRAM1 (0.99, -0.066, P = 3.8e-05, N = 7824) (0.95, 0.065, P = 0.57, N = 859)
rs2291918(T)/12:280761 IQSEC3 (0.38, 0.011, P = 1.1e-05, N = 7824) (0.4, 0.052, P = 0.3, N = 859)
rs709217(T)/12:92526809 C12orf79 (0.5, -0.0073, P = 3.8e-05, N = 7824) (0.51, 0.085, P = 0.079, N = 859)
rs8002031(A)/13:113285643* intergenic (0.026, 0.16, P = 7.8e-07, N = 1958) (0.19, -0.0084, P = 0.89, N = 859)
rs9600122(C)/13:73968602 intergenic (0.92, -0.017, P = 4.3e-05, N = 7824) (0.84, -0.035, P = 0.58, N = 859)
rs3861122(T)/13:74076150 LINC00393 (0.16, -0.011, P = 3.4e-05, N = 7824) (0.1, -0.16, P = 0.039, N = 859)
rs16944928(A)/13:91572636 LINC00410 (0.98, -0.037, P = 3.8e-05, N = 7824) (0.86, 0.013, P = 0.85, N = 859)
rs12887798(T)/14:87693931 intergenic (0.19, -0.17, P = 1.9e-06, N = 1958) (0.2, 0.023, P = 0.7, N = 859)
rs17223831(A)/14:90601920 KCNK13 (0.11, 0.014, P = 4.9e-05, N = 7824) (0.072, 0.037, P = 0.7, N = 859)
rs1285777(A)/14:91802285* CCDC88C (0.92, -0.016, P = 1.1e-05, N = 7824) (0.9, 0.0015, P = 0.99, N = 859)
rs8021497(A)/14:93567618* ITPK1 (0.21, 0.019, P = 4.7e-05, N = 7824) (0.45, -0.0079, P = 0.87, N = 859)
rs5814078(GTTGT)/15:81935875 CTD-2034I4.1 (0.49, 0.2, P = 8.8e-06, N = 1958) (0.93, -0.023, P = 0.8, N = 859)
rs6602982(A)/15:84257744* SH3GL3 (0.49, -0.0074, P = 3.4e-05, N = 7824) (0.54, 0.0018, P = 0.97, N = 859)
rs12447365(A)/16:14462949* RP11-65J21.1 (0.21, -0.011, P = 2.9e-05, N = 7824) (0.069, 0.061, P = 0.52, N = 859)
rs10153066(T)/16:7257971* RBFOX1 (0.44, 0.0085, P = 2.1e-06, N = 7824) (0.45, -0.088, P = 0.07, N = 859)
rs984327(A)/16:7772217* SNORA40 (0.71, -0.017, P = 4e-05, N = 7824) (0.56, -0.0077, P = 0.87, N = 859)
rs8059060(A)/16:89191264 ACSF3 (0.89, 0.025, P = 3.5e-05, N = 7824) (0.61, -0.049, P = 0.31, N = 859)
rs4646359(T)/17:17470609* PEMT (0.53, -0.0083, P = 3.2e-06, N = 7824) (0.32, -0.016, P = 0.76, N = 859)
rs2345424(A)/17:71233783 C17orf80 (0.99, -0.079, P = 2.3e-05, N = 7824) (0.8, 0.022, P = 0.71, N = 859)
rs2729411(T)/18:28142042 intergenic (0.24, 0.018, P = 4.9e-05, N = 7824) (0.54, -0.0054, P = 0.91, N = 859)
rs8090293(A)/18:4031916 DLGAP1 (0.53, -0.019, P = 2e-05, N = 7824) (0.52, 0.061, P = 0.2, N = 859)
rs7229475(G)/18:6514018* C18orf64 (0.29, -1, P = 3.4e-06, N = 1958) (0.66, 0.025, P = 0.62, N = 859)
rs7246788(T)/19:18575450* ELL (0.2, 0.011, P = 1.4e-05, N = 7824) (0.22, -0.13, P = 0.024, N = 859)
rs9305014(A)/19:24306763 ZNF254 (0.92, 0.017, P = 4.7e-05, N = 7824) (0.65, 0.072, P = 0.16, N = 859)
rs12151827(T)/2:135673387* CCNT2 (0.82, -0.014, P = 6.3e-08, N = 7824) (0.76, 0.044, P = 0.43, N = 859)
rs724394(A)/2:139854856 intergenic (0.82, -0.011, P = 2e-05, N = 7824) (0.93, 0.09, P = 0.33, N = 859)
rs78989095(A)/2:211534417* CPS1 (0.037, 0.12, P = 4.1e-06, N = 1958) (0.066, -0.096, P = 0.32, N = 859)
rs715(T)/2:211543055* CPS1 (0.71, 0.022, P = 2.1e-19, N = 7824) (0.81, -0.061, P = 0.33, N = 859)
rs11887861(A)/2:211548693* CPS1 (0.34, 0.013, P = 1.4e-07, N = 7824) (0.37, -0.11, P = 0.026, N = 859)
rs13021675(T)/2:211661935* intergenic (0.2, -0.012, P = 1.8e-06, N = 7824) (0.16, -0.072, P = 0.28, N = 859)
rs11685209(T)/2:77658045 LRRTM4 (0.37, -0.016, P = 2.9e-05, N = 7824) (0.51, -0.032, P = 0.5, N = 859)
rs6118048(A)/20:8051081 intergenic (0.16, 0.011, P = 4.5e-05, N = 7824) (0.16, -0.017, P = 0.79, N = 859)
rs8131547(T)/21:44320989 NDUFV3 (0.53, 0.01, P = 1.3e-05, N = 7824) (0.71, -0.0069, P = 0.89, N = 859)
rs2851391(T)/21:44487404* CBS (0.46, -0.012, P = 1.1e-11, N = 7824) (0.24, -0.027, P = 0.63, N = 859)
rs134790(T)/22:27653397* intergenic (0.84, -0.011, P = 1.9e-05, N = 7824) (0.91, -0.17, P = 0.049, N = 859)
rs2227089(T)/22:36645089* APOL1 (0.4, -0.2, P = 3.9e-07, N = 1958) (0.28, 0.0031, P = 0.95, N = 859)
rs16835527(C)/3:124205980 KALRN (0.82, -0.011, P = 1.8e-05, N = 7824) (0.95, 0.1, P = 0.35, N = 859)
rs2700868(T)/3:182440135* intergenic (0.15, 0.26, P = 5.9e-06, N = 1958) (0.2, 0.095, P = 0.11, N = 859)
rs11410898(AT)/3:184771382 VPS8 (0.26, -0.17, P = 8.7e-06, N = 1958) (0.15, 0.022, P = 0.75, N = 859)
rs10937433(C)/3:190177112 intergenic (0.5, 0.008, P = 6.6e-06, N = 7824) (0.68, 0.069, P = 0.18, N = 859)
rs1195362(A)/3:190823801 intergenic (0.95, -0.041, P = 3.4e-05, N = 7824) (0.99, 0.062, P = 0.78, N = 859)
rs7668550(T)/4:104384356* intergenic (0.016, -0.037, P = 5.5e-06, N = 7824) (0.24, -0.064, P = 0.25, N = 859)
rs13104073(T)/4:127695984 intergenic (0.01, -0.087, P = 3.5e-05, N = 7824) (0.069, 0.049, P = 0.61, N = 859)
rs10033669(T)/4:177189004 ASB5 (0.089, 0.017, P = 1.5e-05, N = 7824) (0.08, -0.059, P = 0.51, N = 859)
rs17494639(T)/4:80218062 LINC01088 (0.83, -0.011, P = 3.2e-05, N = 7824) (0.97, 0.21, P = 0.1, N = 859)
rs11943623(A)/4:86554948 ARHGAP24 (0.17, -0.011, P = 8.4e-06, N = 7824) (0.17, -0.11, P = 0.081, N = 859)
rs17481649(T)/5:115305573* AQPEP (0.063, -0.019, P = 1.1e-05, N = 7824) (0.078, 0.063, P = 0.48, N = 859)
rs154555(G)/5:115797852 SEMA6A (0.57, -0.46, P = 1.7e-06, N = 1958) (0.26, -0.052, P = 0.34, N = 859)
rs4476723(T)/5:11796865* CTNND2 (0.98, -0.16, P = 5.7e-06, N = 1958) (0.63, -0.081, P = 0.11, N = 859)
rs34199803(CTT)/5:122043333 RP11-166A12.1 (0.014, -0.9, P = 7.9e-07, N = 1958) (0.48, 0.024, P = 0.62, N = 859)
rs164372(T)/5:160621043 intergenic (0.8, 0.012, P = 2.6e-06, N = 7824) (0.63, -0.022, P = 0.66, N = 859)
rs2319470(A)/5:24532664 CDH10 (0.51, -0.0074, P = 3.3e-05, N = 7824) (0.29, -0.046, P = 0.39, N = 859)
rs3797248(A)/5:53509186* ARL15 (0.17, 0.012, P = 4.6e-06, N = 7824) (0.1, -0.086, P = 0.29, N = 859)
rs6862283(T)/5:78319638* DMGDH (0.7, 0.019, P = 7.9e-16, N = 7824) (0.34, 0.043, P = 0.4, N = 859)
rs16876394(T)/5:78346769* DMGDH (0.9, 0.03, P = 1.5e-19, N = 7824) (0.91, -0.064, P = 0.44, N = 859)
rs16876498(T)/5:78402594* DMGDH (0.9, 0.03, P = 2.5e-19, N = 7824) (0.89, 0.00093, P = 0.99, N = 859)
rs1275103(C)/5:78448105* DMGDH (0.61, -0.015, P = 6.8e-11, N = 7824) (0.35, -0.051, P = 0.31, N = 859)
rs17206977(A)/5:85387218 PTP4A1P4 (0.92, -0.017, P = 2.9e-05, N = 7824) (0.97, -0.052, P = 0.69, N = 859)
rs7763624(A)/6:157418960 ARID1B (0.56, -0.2, P = 5e-06, N = 1958) (0.53, 0.013, P = 0.79, N = 859)
rs9457843(T)/6:160560933* SLC22A1 (0.12, 0.015, P = 1.1e-05, N = 7824) (0.14, 0.016, P = 0.82, N = 859)
rs662138(C)/6:160564476* SLC22A1 (0.83, 0.011, P = 1.3e-05, N = 7824) (0.95, 0.099, P = 0.35, N = 859)
rs203887(T)/6:28021269 OR2B8P (0.23, -0.011, P = 2.3e-05, N = 7824) (0.39, -0.016, P = 0.75, N = 859)
rs1535039(T)/6:29411432* OR11A1 (0.91, 0.018, P = 4.5e-07, N = 7824) (0.99, 0.16, P = 0.45, N = 859)
rs7751856(A)/6:32698988* HLA-DQB3 (0.52, 0.0074, P = 3.7e-05, N = 7824) (0.31, 0.051, P = 0.33, N = 859)
rs9462856(T)/6:42926024* GNMT (0.47, -0.0093, P = 2e-07, N = 7824) (0.14, -0.089, P = 0.19, N = 859)
rs4327704(A)/6:57920632 intergenic (0.95, -0.022, P = 9.9e-06, N = 7824) (0.98, -0.15, P = 0.36, N = 859)
rs410300(G)/6:9030949 intergenic (0.25, -0.23, P = 8.3e-06, N = 1958) (0.18, 0.038, P = 0.53, N = 859)
rs9445037(T)/6:93587599* intergenic (0.53, -0.0077, P = 1.7e-05, N = 7824) (0.16, -0.1, P = 0.12, N = 859)
rs2396726(T)/7:114021410 FOXP2 (0.54, -0.018, P = 4.5e-06, N = 7824) (0.21, 0.04, P = 0.5, N = 859)
rs7781104(T)/7:145158487 intergenic (0.27, 0.021, P = 7.8e-06, N = 7824) (0.51, 0.035, P = 0.46, N = 859)
rs2304396(C)/8:131833823* ADCY8 (0.083, 0.26, P = 4e-06, N = 1958) (0.092, -0.012, P = 0.88, N = 859)
rs2705084(A)/8:17386831* SLC7A2 (0.44, 0.0073, P = 4e-05, N = 7824) (0.62, -0.012, P = 0.81, N = 859)
rs7822571(T)/8:40576179* ZMAT4 (0.46, -0.0074, P = 3.1e-05, N = 7824) (0.4, -0.057, P = 0.25, N = 859)
rs9886534(T)/8:40676655* ZMAT4 (0.51, -0.0079, P = 8.7e-06, N = 7824) (0.29, 0.0047, P = 0.93, N = 859)
rs12708158(T)/8:54835697 RGS20 (0.91, 0.026, P = 4.3e-05, N = 7824) (0.97, 0.14, P = 0.37, N = 859)
rs523224(T)/8:93522691* RP11-587H10.1 (0.19, -0.011, P = 2.2e-05, N = 7824) (0.042, -0.14, P = 0.26, N = 859)
rs1545203(T)/9:112119690* intergenic (0.081, -0.017, P = 3.1e-05, N = 7824) (0.022, -0.26, P = 0.12, N = 859)
rs2249768(A)/9:24542184 IZUMO3 (0.3, 0.19, P = 7.7e-06, N = 1958) (0.31, 0.019, P = 0.71, N = 859)
rs13292748(C)/9:8727087 PTPRD (0.14, -0.21, P = 9.9e-06, N = 1958) (0.026, -0.084, P = 0.58, N = 859)
Results from Univariable Mendelian Randomization of Betaine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 88 -0.0034 (-0.064- 0.058) P=0.91 23 71 3.69e-05 (0- 96.4) NA NA 0.0026 P=0.72
MR-Egger 88 -0.0085 (-0.077- 0.06) P=0.81 23 71 3.69e-05 (0- 96.4) 82 0.6 0.0026 P=0.72
Weighted median 88 -0.026 (-0.11- 0.058) P=0.55 23 71 3.69e-05 (0- 96.4) NA NA 0.0026 P=0.72
Results from Univariable MRPRESSO of Betaine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.03 -0.11 0.91
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Betaine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 45 -0.0076 (-0.088- 0.073) P=0.85 11 24 0.00206 (0- 96.3) NA NA -0.0026 P=0.8
MR-Egger 45 -0.002 (-0.1- 0.096) P=0.97 11 24 0.00206 (0- 96.3) 37 0.74 -0.0026 P=0.8
Weighted median 45 -0.013 (-0.14- 0.12) P=0.85 11 24 0.00206 (0- 96.3) NA NA -0.0026 P=0.8
Results from Univariable MRPRESSO of Betaine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.04 -0.19 0.85
beta.exposure Outlier-corrected NA NA NA NA

L-Carnitine

Instruments Associations with L-Carnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Carnitine (Shin et al/Long et al) eGFR (CSSCD)
rs12725366(A)/1:105904171 intergenic (0.48, -0.0041, P = 5.5e-06, N = 7824) (0.37, 0.031, P = 0.53, N = 859)
rs3754439(A)/1:110615094 ALX3 (0.4, -0.0066, P = 2.3e-13, N = 7824) (0.26, -0.02, P = 0.72, N = 859)
rs1466788(A)/1:110618730 STRIP1 (0.41, -0.0074, P = 3.1e-16, N = 7824) (0.3, -0.013, P = 0.8, N = 859)
rs17032183(A)/1:114603297 intergenic (0.096, -0.0071, P = 3.9e-05, N = 7824) (0.21, 0.044, P = 0.45, N = 859)
rs61810757(C)/1:115846181 NGF (0.81, -0.24, P = 8.8e-06, N = 1954) (0.91, -0.0089, P = 0.92, N = 859)
rs17370344(A)/1:164263810 intergenic (0.64, -0.0047, P = 1.7e-07, N = 7824) (0.84, 0.12, P = 0.082, N = 859)
rs4534357(A)/1:168167139 TIPRL (0.84, 0.0069, P = 1.8e-05, N = 7824) (0.61, 0.03, P = 0.56, N = 859)
rs17613936(T)/1:193938169 intergenic (0.16, 0.19, P = 8.2e-06, N = 1954) (0.027, 0.064, P = 0.66, N = 859)
rs10920115(T)/1:201071884 CACNA1S (0.55, 0.0044, P = 1.6e-06, N = 7824) (0.34, 0.0011, P = 0.98, N = 859)
rs10800765(T)/1:201216597 intergenic (0.46, -0.0039, P = 1.8e-05, N = 7824) (0.12, -0.074, P = 0.31, N = 859)
rs7551550(A)/1:20437764 PLA2G2D (0.47, -0.004, P = 1.1e-05, N = 7824) (0.66, -0.02, P = 0.69, N = 859)
rs12722987(A)/1:20455220* intergenic (0.13, -0.0071, P = 1.7e-05, N = 7824) (0.18, 0.024, P = 0.71, N = 859)
rs1762470(T)/1:208423850* RP11-2P2.1 (0.55, 0.0037, P = 4.1e-05, N = 7824) (0.81, 0.022, P = 0.72, N = 859)
rs1999890(A)/1:210510894 HHAT (0.5, 0.004, P = 1e-05, N = 7824) (0.21, -0.012, P = 0.85, N = 859)
rs2165993(A)/1:211730036 intergenic (0.47, -0.004, P = 1.5e-05, N = 7824) (0.18, 0.0019, P = 0.98, N = 859)
rs4638188(T)/1:212045896 intergenic (0.47, -0.0037, P = 4.2e-05, N = 7824) (0.16, 0.046, P = 0.48, N = 859)
rs2492788(T)/1:212844187* intergenic (0.55, 0.0049, P = 4.6e-08, N = 7824) (0.75, 0.076, P = 0.17, N = 859)
rs1910488(T)/1:213524165 intergenic (0.6, 0.0037, P = 4.1e-05, N = 7824) (0.34, 0.081, P = 0.12, N = 859)
rs4504898(T)/1:221831403* intergenic (0.39, -0.0041, P = 7e-06, N = 7824) (0.48, 0.03, P = 0.53, N = 859)
rs309517(A)/1:23251592 RP1-74M1.3 (0.62, -1.1, P = 4.8e-06, N = 1954) (0.77, -0.027, P = 0.64, N = 859)
rs6426779(T)/1:23310485 intergenic (0.49, -0.0039, P = 1.3e-05, N = 7824) (0.67, 0.04, P = 0.44, N = 859)
rs10802528(T)/1:236506815 EDARADD (0.45, -0.0047, P = 2e-07, N = 7824) (0.62, -0.046, P = 0.36, N = 859)
rs12128699(C)/1:238258461 intergenic (0.65, -0.24, P = 5.5e-06, N = 1954) (0.37, -0.023, P = 0.64, N = 859)
rs259615(C)/1:238433753 RP11-136B18.1 (0.66, 0.16, P = 2.8e-06, N = 1954) (0.95, 0.23, P = 0.036, N = 859)
rs879067(T)/1:244392816* intergenic (0.44, 0.004, P = 7.5e-06, N = 7824) (0.5, -0.029, P = 0.55, N = 859)
rs1507101(A)/1:25251326* RUNX3 (0.57, 0.004, P = 9.6e-06, N = 7824) (0.28, 0.12, P = 0.031, N = 859)
rs3480(A)/1:33328165 S100PBP (0.6, 0.0037, P = 4.4e-05, N = 7824) (0.49, 0.033, P = 0.49, N = 859)
rs2359233(A)/1:34770104 intergenic (0.37, 0.0038, P = 2.9e-05, N = 7824) (0.7, -0.084, P = 0.12, N = 859)
rs10890169(T)/1:42392584 HIVEP3 (0.53, 0.0038, P = 2.9e-05, N = 7824) (0.61, 0.068, P = 0.17, N = 859)
rs778423(C)/1:56656812 intergenic (0.53, -0.0043, P = 2.3e-06, N = 7824) (0.21, 0.047, P = 0.43, N = 859)
rs844072(T)/1:64755056 intergenic (0.44, -0.85, P = 4.2e-06, N = 1954) (0.68, 0.011, P = 0.82, N = 859)
rs1034251(A)/1:64905833 intergenic (0.34, -0.24, P = 5.2e-06, N = 1954) (0.15, 0.0097, P = 0.88, N = 859)
rs17127807(A)/1:66088370* LEPR (0.99, 0.036, P = 4.8e-05, N = 7824) (0.86, -0.037, P = 0.59, N = 859)
rs12135162(T)/1:91905203 intergenic (0.62, 0.0037, P = 4e-05, N = 7824) (0.52, -0.012, P = 0.8, N = 859)
rs12744011(A)/1:92086966 intergenic (0.48, -0.0039, P = 2.3e-05, N = 7824) (0.74, -0.029, P = 0.6, N = 859)
rs11589858(T)/1:92786742 RPAP2 (0.36, -0.0041, P = 5.3e-06, N = 7824) (0.12, -0.058, P = 0.44, N = 859)
rs10875102(A)/1:98159558 DPYD (0.54, -0.0042, P = 4.6e-06, N = 7824) (0.18, -0.049, P = 0.43, N = 859)
rs10883890(C)/10:105390021 SH3PXD2A (0.45, 0.0046, P = 4.3e-07, N = 7824) (0.43, -0.051, P = 0.31, N = 859)
rs4284335(A)/10:109888793 intergenic (0.41, -0.0046, P = 3.5e-07, N = 7824) (0.75, -0.08, P = 0.15, N = 859)
rs4451642(A)/10:113111516 RP11-381K7.1 (0.11, 0.0071, P = 4e-05, N = 7824) (0.083, -0.022, P = 0.8, N = 859)
rs2254426(A)/10:119683609 intergenic (0.4, 0.0037, P = 3.9e-05, N = 7824) (0.44, -0.011, P = 0.82, N = 859)
rs1929667(T)/10:121966798 intergenic (0.99, -0.2, P = 2.1e-06, N = 1954) (0.71, -0.15, P = 0.0041, N = 859)
rs10749365(C)/10:122005859 intergenic (0.99, 0.42, P = 1e-06, N = 1954) (0.92, -0.17, P = 0.05, N = 859)
rs11257841(T)/10:12550970 CAMK1D (0.56, -0.0039, P = 1.3e-05, N = 7824) (0.67, 0.074, P = 0.15, N = 859)
rs4929820(A)/10:125828819* CHST15 (0.34, -0.0039, P = 1.4e-05, N = 7824) (0.3, -0.021, P = 0.69, N = 859)
rs4531372(A)/10:128257882 C10orf90 (0.43, -0.0045, P = 7.1e-07, N = 7824) (0.13, 0.0096, P = 0.89, N = 859)
rs2225978(A)/10:130286830* intergenic (0.52, -0.004, P = 9.1e-06, N = 7824) (0.75, 0.02, P = 0.72, N = 859)
rs2767290(A)/10:130470565 intergenic (0.35, 0.004, P = 8.3e-06, N = 7824) (0.44, -0.032, P = 0.5, N = 859)
rs6602640(T)/10:13227604 MCM10 (0.88, 0.008, P = 2.5e-06, N = 7824) (0.77, -0.063, P = 0.27, N = 859)
rs12245254(T)/10:132500555* intergenic (0.44, 0.0043, P = 1.9e-06, N = 7824) (0.29, 0.14, P = 0.01, N = 859)
rs3810964(A)/10:135000159 KNDC1 (0.53, -0.0038, P = 2.4e-05, N = 7824) (0.85, -0.007, P = 0.92, N = 859)
rs1218444(T)/10:14368831 FRMD4A (0.86, 0.2, P = 9e-06, N = 1954) (0.82, 0.049, P = 0.42, N = 859)
rs10828408(A)/10:23372303 intergenic (0.6, -0.0037, P = 4.9e-05, N = 7824) (0.63, -0.037, P = 0.47, N = 859)
rs377294850(TA)/10:24441655 KIAA1217 (0.089, -0.55, P = 7.8e-06, N = 1954) (0.85, 0.0016, P = 0.98, N = 859)
rs9419445(T)/10:2529326 intergenic (0.53, 0.0042, P = 3.5e-06, N = 7824) (0.8, 0.063, P = 0.29, N = 859)
rs645838(A)/10:3560515 intergenic (0.13, 0.0067, P = 4.9e-05, N = 7824) (0.16, 0.038, P = 0.57, N = 859)
rs12246131(A)/10:45993782* MARCH8 (0.78, 0.008, P = 2.4e-07, N = 7824) (0.79, 0.11, P = 0.058, N = 859)
rs4319434(A)/10:50345140 FAM170B (0.4, 0.0037, P = 3.7e-05, N = 7824) (0.091, -0.011, P = 0.89, N = 859)
rs6481417(A)/10:60405788 BICC1 (0.97, -0.18, P = 5.4e-06, N = 1954) (0.96, 0.035, P = 0.78, N = 859)
rs1981138(T)/10:61303642 intergenic (0.43, 0.0046, P = 3.3e-07, N = 7824) (0.8, 0.14, P = 0.022, N = 859)
rs12356193(A)/10:61413353* SLC16A9 (0.84, 0.027, P = 3.7e-63, N = 7824) (0.92, 0.016, P = 0.86, N = 859)
rs2242206(T)/10:61414011* SLC16A9 (0.26, 0.012, P = 4.7e-16, N = 7824) (0.09, 0.076, P = 0.36, N = 859)
rs1171610(T)/10:61477697* SLC16A9 (0.62, 0.0081, P = 2.5e-19, N = 7824) (0.54, 0.0046, P = 0.93, N = 859)
rs6479648(A)/10:61510559* LINC00948 (0.42, -0.0087, P = 8.4e-22, N = 7824) (0.57, 0.018, P = 0.72, N = 859)
rs10994097(A)/10:61730651 intergenic (0.48, -0.0038, P = 2.4e-05, N = 7824) (0.28, -0.076, P = 0.15, N = 859)
rs2394298(A)/10:68462751* CTNNA3 (0.59, 0.0047, P = 1.5e-07, N = 7824) (0.65, 0.048, P = 0.34, N = 859)
rs1925611(A)/10:68756918 CTNNA3 (0.47, -0.0048, P = 2e-07, N = 7824) (0.66, -0.016, P = 0.75, N = 859)
rs2762613(T)/10:7225045 SFMBT2 (0.61, -0.0037, P = 4e-05, N = 7824) (0.72, -0.027, P = 0.61, N = 859)
rs9415053(C)/10:73575910 CDH23 (0.47, -0.0042, P = 2.8e-06, N = 7824) (0.28, 0.059, P = 0.27, N = 859)
rs11596100(A)/10:78612153 intergenic (0.4, 0.0039, P = 2.2e-05, N = 7824) (0.21, -0.049, P = 0.39, N = 859)
rs4881523(T)/10:801945 intergenic (0.54, 0.0045, P = 6e-07, N = 7824) (0.82, -0.0069, P = 0.92, N = 859)
rs478982(A)/10:84585708 NRG3 (0.34, 0.004, P = 9.1e-06, N = 7824) (0.52, -0.017, P = 0.73, N = 859)
rs11253451(T)/10:852885 LARP4B (0.42, 0.004, P = 1.3e-05, N = 7824) (0.17, 0.076, P = 0.22, N = 859)
rs1936602(T)/10:92445253 intergenic (0.42, 0.0043, P = 2.5e-06, N = 7824) (0.71, -0.0022, P = 0.97, N = 859)
rs6583992(T)/10:97086735* SORBS1 (0.52, -0.0038, P = 2.5e-05, N = 7824) (0.34, 0.052, P = 0.3, N = 859)
rs11601438(A)/11:101955932 C11orf70 (0.39, -0.0042, P = 2.9e-06, N = 7824) (0.48, -9e-04, P = 0.98, N = 859)
rs470747(A)/11:102661595 MMP1 (0.64, 0.0038, P = 2.8e-05, N = 7824) (0.65, -0.023, P = 0.65, N = 859)
rs4075679(T)/11:11318921 GALNT18 (0.56, -0.0037, P = 3.7e-05, N = 7824) (0.67, -0.042, P = 0.42, N = 859)
rs10789970(T)/11:113773946* HTR3B (0.41, -0.0041, P = 6.6e-06, N = 7824) (0.64, -0.054, P = 0.3, N = 859)
rs2702023(C)/11:125465020 STT3A (0.4, 0.0045, P = 8.6e-07, N = 7824) (0.7, 0.046, P = 0.38, N = 859)
rs4937076(A)/11:125826702* CDON (0.53, 0.0039, P = 1.6e-05, N = 7824) (0.37, 0.023, P = 0.65, N = 859)
rs11022568(A)/11:12966883 TEAD1 (0.36, 0.0039, P = 1.5e-05, N = 7824) (0.5, -0.065, P = 0.19, N = 859)
rs923075(T)/11:130311545 intergenic (0.61, -0.0041, P = 4.8e-06, N = 7824) (0.34, -0.06, P = 0.26, N = 859)
rs11223211(A)/11:132663965* OPCML (0.47, 0.0047, P = 1.7e-07, N = 7824) (0.42, 0.0076, P = 0.87, N = 859)
rs2793471(T)/11:29387798 RP11-460B17.3 (0.57, 0.0041, P = 7.2e-06, N = 7824) (0.82, 0.064, P = 0.31, N = 859)
rs2295756(T)/11:35241229 CD44 (0.65, -0.0038, P = 3.3e-05, N = 7824) (0.76, 0.0011, P = 0.98, N = 859)
rs11033087(T)/11:35374044 SLC1A2 (0.39, 0.0038, P = 3.4e-05, N = 7824) (0.36, -0.031, P = 0.54, N = 859)
rs10501155(A)/11:36445197 PRR5L (0.64, -0.0038, P = 4e-05, N = 7824) (0.57, -0.058, P = 0.25, N = 859)
rs12283045(A)/11:39593279 intergenic (0.023, -0.03, P = 3.6e-05, N = 7824) (0.026, -0.1, P = 0.52, N = 859)
rs4313557(A)/11:39601993 intergenic (0.98, 0.03, P = 3.3e-05, N = 7824) (0.88, -0.072, P = 0.33, N = 859)
rs2595993(A)/11:4964627* MMP26 (0.5, -0.0042, P = 2.9e-06, N = 7824) (0.67, 0.053, P = 0.29, N = 859)
rs7940551(T)/11:60592783 RP11-804A23.1 (0.44, -0.004, P = 8.3e-06, N = 7824) (0.57, 0.055, P = 0.26, N = 859)
rs561895(T)/11:64602757 CDC42BPG (0.66, -0.0042, P = 6.6e-06, N = 7824) (0.39, -0.024, P = 0.63, N = 859)
rs2009453(T)/11:65399528 PCNXL3 (0.56, 0.0038, P = 2.5e-05, N = 7824) (0.4, -0.012, P = 0.81, N = 859)
rs2170082(A)/11:65454795* intergenic (0.52, -0.0047, P = 2.2e-07, N = 7824) (0.39, -0.013, P = 0.79, N = 859)
rs4078258(T)/11:7542298* PPFIBP2 (0.63, -0.0041, P = 6.1e-06, N = 7824) (0.9, 0.076, P = 0.34, N = 859)
rs575929(T)/11:78888265* TENM4 (0.63, 0.0039, P = 1.3e-05, N = 7824) (0.86, 0.014, P = 0.84, N = 859)
rs2508305(T)/11:86410402 CTD-2005H7.1 (0.89, -0.0079, P = 4.1e-06, N = 7824) (0.85, -0.031, P = 0.65, N = 859)
rs12417365(T)/11:93903770 PANX1 (0.52, -0.004, P = 7.8e-06, N = 7824) (0.52, -0.0053, P = 0.91, N = 859)
rs1541301(T)/11:93926656 RP11-680H20.1 (0.41, -0.0037, P = 3.6e-05, N = 7824) (0.51, 0.032, P = 0.51, N = 859)
rs10840262(C)/11:9589840 intergenic (0.52, 0.0041, P = 3.4e-06, N = 7824) (0.74, -0.12, P = 0.035, N = 859)
rs7929841(T)/11:96195715* JRKL-AS1 (0.65, 0.0043, P = 2.1e-06, N = 7824) (0.47, 0.03, P = 0.54, N = 859)
rs996408(T)/12:100051003 ANKS1B (0.52, -0.0046, P = 3.7e-07, N = 7824) (0.75, 0.088, P = 0.12, N = 859)
rs844016(T)/12:101592689* SLC5A8 (0.58, 0.0047, P = 2.2e-07, N = 7824) (0.44, -0.031, P = 0.53, N = 859)
rs7956795(T)/12:107536076 intergenic (0.63, 0.0037, P = 3.2e-05, N = 7824) (0.51, 0.013, P = 0.79, N = 859)
rs11066777(T)/12:109478352 USP30 (0.14, -0.007, P = 1.4e-05, N = 7824) (0.034, -0.052, P = 0.7, N = 859)
rs2062713(T)/12:115176552 RP4-601P9.2 (0.47, -0.0038, P = 2.7e-05, N = 7824) (0.24, 0.0066, P = 0.91, N = 859)
rs1391715(T)/12:115821235 intergenic (0.59, -0.0037, P = 3.7e-05, N = 7824) (0.66, -0.066, P = 0.19, N = 859)
rs514826(A)/12:118809303* TAOK3 (0.34, 0.0038, P = 3.5e-05, N = 7824) (0.27, 0.017, P = 0.75, N = 859)
rs10734956(A)/12:128653360 intergenic (0.034, -0.018, P = 2e-05, N = 7824) (0.11, 0.11, P = 0.14, N = 859)
rs12370755(A)/12:16664330 RP11-424M22.1 (0.49, -0.0039, P = 1.5e-05, N = 7824) (0.8, -0.027, P = 0.65, N = 859)
rs4764292(T)/12:16937829 RP11-239A17.1 (0.58, 0.0044, P = 9.8e-07, N = 7824) (0.48, -0.077, P = 0.11, N = 859)
rs4931109(T)/12:29005992* intergenic (0.097, -0.0072, P = 3.5e-05, N = 7824) (0.16, 0.073, P = 0.28, N = 859)
rs12825454(T)/12:29296989* RP11-946L16.1 (0.95, 0.02, P = 1.2e-05, N = 7824) (0.99, 0.024, P = 0.91, N = 859)
rs11052839(C)/12:33836056 intergenic (0.4, 0.0037, P = 3.9e-05, N = 7824) (0.61, -1e-04, P = 1, N = 859)
rs1449844(C)/12:39521446 intergenic (0.4, -0.0048, P = 9.2e-08, N = 7824) (0.51, -0.03, P = 0.53, N = 859)
rs11183620(A)/12:47212370* SLC38A4 (0.47, 0.005, P = 3e-08, N = 7824) (0.8, -0.00048, P = 0.99, N = 859)
rs3825192(A)/12:54778823 ZNF385A (0.56, -0.0038, P = 2.8e-05, N = 7824) (0.22, 0.0063, P = 0.91, N = 859)
rs1716342(A)/12:54998214 GLYCAM1 (0.34, -0.0092, P = 2.6e-05, N = 7824) (0.42, -0.075, P = 0.12, N = 859)
rs10876579(T)/12:55051647 intergenic (0.51, 0.0037, P = 3.9e-05, N = 7824) (0.32, 0.026, P = 0.62, N = 859)
rs10784558(T)/12:67003883 GRIP1 (0.48, -0.0048, P = 1.1e-07, N = 7824) (0.72, 0.11, P = 0.04, N = 859)
rs6581712(A)/12:67066139 GRIP1 (0.61, 0.0043, P = 2.5e-06, N = 7824) (0.89, -0.13, P = 0.09, N = 859)
rs1144963(T)/12:69335625 CPM (0.56, -0.0046, P = 2.5e-07, N = 7824) (0.86, -0.053, P = 0.44, N = 859)
rs10784751(A)/12:69447462 intergenic (0.51, 0.004, P = 9.3e-06, N = 7824) (0.62, -0.0065, P = 0.9, N = 859)
rs10772367(C)/12:7278538 RBP5 (0.6, -0.004, P = 8.6e-06, N = 7824) (0.68, 0.021, P = 0.68, N = 859)
rs6539588(T)/12:82269057* intergenic (0.39, 0.0043, P = 1.9e-06, N = 7824) (0.23, 0.011, P = 0.85, N = 859)
rs7961308(T)/12:82404500 intergenic (0.65, 0.0039, P = 1.4e-05, N = 7824) (0.73, 0.028, P = 0.6, N = 859)
rs9651972(A)/12:83861845* intergenic (0.54, -0.0037, P = 4e-05, N = 7824) (0.53, 0.047, P = 0.33, N = 859)
rs36110904(G)/13:101621161 NALCN-AS1 (0.12, -0.55, P = 8e-06, N = 1954) (0.075, -0.024, P = 0.8, N = 859)
rs9557806(A)/13:102762742 FGF14 (0.55, -0.0042, P = 2.4e-06, N = 7824) (0.16, 0.018, P = 0.78, N = 859)
rs7981434(T)/13:105494343 intergenic (0.13, -0.0072, P = 1.4e-05, N = 7824) (0.14, -0.07, P = 0.32, N = 859)
rs1771142(T)/13:108581825 intergenic (0.94, 0.01, P = 4.2e-05, N = 7824) (0.83, 0.059, P = 0.36, N = 859)
rs1223979(A)/13:108775403 intergenic (0.34, 0.0039, P = 2.4e-05, N = 7824) (0.26, -0.086, P = 0.11, N = 859)
rs7334548(A)/13:20131135 MRPS31P2 (0.1, -0.007, P = 3.5e-05, N = 7824) (0.18, 0.025, P = 0.68, N = 859)
rs7331418(T)/13:20880993* intergenic (0.49, -0.0037, P = 3.3e-05, N = 7824) (0.24, 0.046, P = 0.42, N = 859)
rs9578362(T)/13:21882381 LINC00422 (0.42, 0.0037, P = 4.2e-05, N = 7824) (0.35, -0.0048, P = 0.92, N = 859)
rs9552478(T)/13:22306355* intergenic (0.41, 0.0037, P = 4.9e-05, N = 7824) (0.38, 0.13, P = 0.011, N = 859)
rs2133813(T)/13:27199422 WASF3 (0.44, 0.0041, P = 9.5e-06, N = 7824) (0.75, -0.056, P = 0.31, N = 859)
rs4769648(T)/13:29518969 intergenic (0.54, -0.0041, P = 2e-05, N = 7824) (0.86, 0.096, P = 0.17, N = 859)
rs9508555(C)/13:30372036 UBL3 (0.6, 0.004, P = 1.2e-05, N = 7824) (0.34, 0.055, P = 0.29, N = 859)
rs7325107(A)/13:31513425 TEX26 (0.65, -0.0037, P = 4.6e-05, N = 7824) (0.55, 0.088, P = 0.071, N = 859)
rs10507402(C)/13:31859378 B3GALTL (0.061, 0.0099, P = 4.3e-05, N = 7824) (0.013, -0.14, P = 0.51, N = 859)
rs1869800(T)/13:32180136 intergenic (0.51, -0.004, P = 1e-05, N = 7824) (0.25, 0.0026, P = 0.96, N = 859)
rs7991989(T)/13:37947132 intergenic (0.61, 0.0041, P = 4.3e-06, N = 7824) (0.58, -0.12, P = 0.018, N = 859)
rs11618539(T)/13:39470388 intergenic (0.34, -0.0038, P = 2.9e-05, N = 7824) (0.21, -0.1, P = 0.095, N = 859)
rs238340(A)/13:42821270 DGKH (0.57, -0.0042, P = 4.8e-06, N = 7824) (0.77, 0.021, P = 0.72, N = 859)
rs2260128(A)/13:51301137 DLEU7 (0.5, 0.0039, P = 2.3e-05, N = 7824) (0.14, 0.061, P = 0.39, N = 859)
rs1326095(T)/13:59921558 intergenic (0.6, -0.0038, P = 2.8e-05, N = 7824) (0.57, -0.0073, P = 0.89, N = 859)
rs3127274(T)/13:61757866 intergenic (0.42, 0.0043, P = 2.1e-06, N = 7824) (0.75, -0.045, P = 0.42, N = 859)
rs3128061(T)/13:62843923 intergenic (0.4, -0.0049, P = 5.7e-08, N = 7824) (0.65, 0.05, P = 0.32, N = 859)
rs1537385(T)/13:73655521 KLF5 (0.96, 0.032, P = 1.2e-06, N = 7824) (0.82, -0.06, P = 0.34, N = 859)
rs9318214(T)/13:74344393 KLF12 (0.6, -0.0039, P = 1.8e-05, N = 7824) (0.57, -0.016, P = 0.73, N = 859)
rs9530362(T)/13:75230797 intergenic (0.57, -0.0044, P = 1.2e-06, N = 7824) (0.49, 0.06, P = 0.22, N = 859)
rs9530483(C)/13:76460888 C13orf45 (0.56, -0.0039, P = 1.5e-05, N = 7824) (0.2, 0.1, P = 0.083, N = 859)
rs12427799(T)/13:76469472 intergenic (0.33, -0.0038, P = 3.4e-05, N = 7824) (0.34, 0.043, P = 0.4, N = 859)
rs17065231(T)/13:76478084 intergenic (0.094, -0.0092, P = 7.2e-08, N = 7824) (0.19, -0.055, P = 0.37, N = 859)
rs2000364(T)/13:83157116 intergenic (0.63, 0.0041, P = 5.7e-06, N = 7824) (0.54, -0.029, P = 0.54, N = 859)
rs2390038(A)/13:98960113 FARP1 (0.52, 0.004, P = 1.9e-05, N = 7824) (0.66, 0.0044, P = 0.93, N = 859)
rs2297732(A)/14:20781361 CCNB1IP1 (0.39, -0.0039, P = 1.9e-05, N = 7824) (0.59, 0.067, P = 0.17, N = 859)
rs1760903(A)/14:20852817* TEP1 (0.44, -0.0045, P = 1e-06, N = 7824) (0.76, 0.078, P = 0.17, N = 859)
rs2204941(T)/14:22364012 TRAV8-4 (0.37, -0.0039, P = 1.6e-05, N = 7824) (0.56, 0.028, P = 0.56, N = 859)
rs979027(A)/14:22488509 intergenic (0.36, -0.0039, P = 1.7e-05, N = 7824) (0.65, 0.059, P = 0.24, N = 859)
rs12891757(C)/14:24758467 DHRS1 (0.5, -0.13, P = 2.1e-06, N = 1954) (0.25, -0.12, P = 0.035, N = 859)
rs11159415(A)/14:26098033 intergenic (0.39, -0.0039, P = 1.9e-05, N = 7824) (0.3, 0.08, P = 0.14, N = 859)
rs10136635(A)/14:26567277* RP11-314P15.2 (0.55, 0.0041, P = 6e-06, N = 7824) (0.57, -0.033, P = 0.51, N = 859)
rs2807822(T)/14:28484921 intergenic (0.45, -0.0039, P = 1.7e-05, N = 7824) (0.27, 0.0084, P = 0.88, N = 859)
rs11844637(T)/14:30023621 intergenic (0.53, -0.0036, P = 5e-05, N = 7824) (0.64, 0.013, P = 0.79, N = 859)
rs4981891(A)/14:32193959 NUBPL (0.37, 0.0037, P = 3.5e-05, N = 7824) (0.68, 0.093, P = 0.07, N = 859)
rs10147032(A)/14:34395888 EGLN3 (0.52, 0.0038, P = 2.1e-05, N = 7824) (0.44, -0.053, P = 0.28, N = 859)
rs17557823(T)/14:38628997 CTD-2058B24.2 (0.64, -0.0037, P = 3.9e-05, N = 7824) (0.89, -0.0056, P = 0.94, N = 859)
rs2022681(A)/14:48147028 MDGA2 (0.52, -0.0039, P = 1.9e-05, N = 7824) (0.45, 0.064, P = 0.19, N = 859)
rs4901008(A)/14:50737669* L2HGDH (0.55, -0.0039, P = 1.6e-05, N = 7824) (0.77, -0.017, P = 0.77, N = 859)
rs10130689(T)/14:51391471 PYGL (0.16, -0.0075, P = 5e-06, N = 7824) (0.064, -0.092, P = 0.34, N = 859)
rs10131515(A)/14:59315152 RP11-112J1.2 (0.86, 0.0072, P = 3.1e-05, N = 7824) (0.82, 0.026, P = 0.68, N = 859)
rs1256061(T)/14:64703593* ESR2 (0.47, -0.0038, P = 3.1e-05, N = 7824) (0.33, 0.062, P = 0.23, N = 859)
rs11620955(A)/14:65491255* FNTB (0.48, -0.0051, P = 1.6e-08, N = 7824) (0.29, -0.016, P = 0.76, N = 859)
rs2526920(A)/14:73101727 DPF3 (0.44, 0.0039, P = 1.7e-05, N = 7824) (0.37, -0.05, P = 0.32, N = 859)
rs740974(A)/14:73188074 DPF3 (0.64, -0.0038, P = 3.3e-05, N = 7824) (0.86, -0.0062, P = 0.93, N = 859)
rs6637(T)/14:77801431 TMED8 (0.62, -0.0038, P = 3.8e-05, N = 7824) (0.86, -0.057, P = 0.42, N = 859)
rs2210185(T)/14:84438761* intergenic (0.53, -0.0039, P = 1.8e-05, N = 7824) (0.54, -0.041, P = 0.39, N = 859)
rs4643242(A)/14:84831048 intergenic (0.47, -0.0038, P = 2.7e-05, N = 7824) (0.61, 0.048, P = 0.3, N = 859)
rs2474028(T)/14:92403660* FBLN5 (0.36, 0.0037, P = 4.5e-05, N = 7824) (0.27, -0.042, P = 0.44, N = 859)
rs11620973(A)/14:96018052 intergenic (0.63, -0.0051, P = 2.3e-08, N = 7824) (0.61, -0.0076, P = 0.88, N = 859)
rs11630130(A)/15:26000551* ATP10A (0.14, 0.0092, P = 5.8e-06, N = 7824) (0.26, 0.043, P = 0.44, N = 859)
rs11070560(A)/15:47256943* intergenic (0.34, -0.0039, P = 1.6e-05, N = 7824) (0.29, -0.032, P = 0.53, N = 859)
rs809760(G)/15:49011421* CEP152 (0.7, 0.12, P = 2.3e-06, N = 1954) (0.69, -0.048, P = 0.34, N = 859)
rs496150(A)/15:53410502 RP11-209E8.1 (0.63, -0.004, P = 9.9e-06, N = 7824) (0.29, 0.039, P = 0.46, N = 859)
rs1189402(A)/15:53728154* intergenic (0.62, 0.0037, P = 4.4e-05, N = 7824) (0.77, 0.03, P = 0.61, N = 859)
rs7162803(A)/15:60160944 RP11-568G20.2 (0.5, 0.0048, P = 8.5e-08, N = 7824) (0.4, 0.062, P = 0.21, N = 859)
rs12595347(T)/15:60284511* intergenic (0.54, -0.0037, P = 3.8e-05, N = 7824) (0.59, -0.092, P = 0.058, N = 859)
rs11635276(C)/15:68757515* intergenic (0.52, -0.0041, P = 5.4e-06, N = 7824) (0.32, -0.088, P = 0.091, N = 859)
rs2114713(T)/15:80528373 RP11-2E17.1 (0.58, -0.005, P = 2.7e-08, N = 7824) (0.43, -0.063, P = 0.21, N = 859)
rs7175825(C)/15:80795419 ARNT2 (0.38, -0.0037, P = 4.2e-05, N = 7824) (0.38, -0.026, P = 0.61, N = 859)
rs11630705(C)/15:84614800 ADAMTSL3 (0.41, 0.0045, P = 5.1e-07, N = 7824) (0.15, -0.0011, P = 0.99, N = 859)
rs12443054(T)/15:89711479 ABHD2 (0.65, 0.0037, P = 4e-05, N = 7824) (0.61, -0.12, P = 0.01, N = 859)
rs7174567(A)/15:94669167* intergenic (0.56, 0.0037, P = 4e-05, N = 7824) (0.58, 0.022, P = 0.65, N = 859)
rs2130882(T)/15:98513845 ARRDC4 (0.49, 0.0044, P = 1.1e-06, N = 7824) (0.89, 0.0049, P = 0.95, N = 859)
rs3743582(A)/16:11650325 LITAF (0.48, -0.0037, P = 3.4e-05, N = 7824) (0.36, 0.016, P = 0.75, N = 859)
rs4633738(A)/16:11742027 intergenic (0.48, 0.0041, P = 5.4e-06, N = 7824) (0.29, -0.047, P = 0.38, N = 859)
rs7500049(A)/16:23006790 intergenic (0.39, 0.004, P = 1e-05, N = 7824) (0.85, 0.079, P = 0.25, N = 859)
rs11863492(A)/16:23044175 intergenic (0.37, 0.0037, P = 4.2e-05, N = 7824) (0.22, -0.04, P = 0.49, N = 859)
rs2014139(T)/16:25433163 CTA-249B10.1 (0.47, -0.0037, P = 3.9e-05, N = 7824) (0.29, -0.049, P = 0.36, N = 859)
rs205120(A)/16:25668663 intergenic (0.44, 0.0039, P = 1.2e-05, N = 7824) (0.28, -0.054, P = 0.31, N = 859)
rs10871453(C)/16:30536918 ZNF768 (0.61, -0.0038, P = 2.8e-05, N = 7824) (0.53, -0.066, P = 0.17, N = 859)
rs2192858(T)/16:51992615* intergenic (0.64, 0.004, P = 1.2e-05, N = 7824) (0.23, -0.061, P = 0.29, N = 859)
rs2432560(T)/16:58533709 NDRG4 (0.63, 0.0042, P = 6.1e-06, N = 7824) (0.64, 0.0099, P = 0.85, N = 859)
rs73549090(T)/16:59454967 intergenic (0.023, -0.83, P = 3.7e-06, N = 1954) (0.13, -0.011, P = 0.87, N = 859)
rs12926141(T)/16:62411321 intergenic (0.37, 0.0039, P = 2e-05, N = 7824) (0.3, -0.056, P = 0.29, N = 859)
rs1544811(A)/16:62656937 intergenic (0.46, 0.004, P = 9e-06, N = 7824) (0.48, -0.0028, P = 0.95, N = 859)
rs2274239(A)/16:68725783 CDH3 (0.61, 0.0039, P = 1.3e-05, N = 7824) (0.67, 0.03, P = 0.56, N = 859)
rs4888504(T)/16:76465969 CNTNAP4 (0.42, 0.0046, P = 2.7e-07, N = 7824) (0.58, -0.11, P = 0.023, N = 859)
rs12934986(A)/16:81553070 CMIP (0.14, -0.0072, P = 1.2e-05, N = 7824) (0.14, 0.065, P = 0.35, N = 859)
rs12931303(C)/16:83613314 CDH13 (0.1, -0.012, P = 1.3e-05, N = 7824) (0.061, -0.19, P = 0.068, N = 859)
rs13330994(C)/16:84414741 ATP2C2 (0.57, 1.2, P = 4.8e-06, N = 1954) (0.57, 0.0012, P = 0.98, N = 859)
rs2132850(A)/16:84975550* RP11-254F19.3 (0.5, 0.0038, P = 2.3e-05, N = 7824) (0.34, 0.029, P = 0.57, N = 859)
rs7203110(A)/16:8523542 intergenic (0.44, -0.0038, P = 2.4e-05, N = 7824) (0.4, 0.034, P = 0.49, N = 859)
rs556436666(CT)/17:1965296 SMG6 (0.08, -1.2, P = 8.8e-06, N = 1954) (0.027, 0.25, P = 0.091, N = 859)
rs2066713(A)/17:28551665 SLC6A4 (0.4, 0.0038, P = 2.4e-05, N = 7824) (0.25, -0.093, P = 0.095, N = 859)
rs4305127(T)/17:31817874 ASIC2 (0.4, -0.005, P = 5.7e-07, N = 7824) (0.86, 0.0037, P = 0.96, N = 859)
rs2158298(T)/17:39072234* intergenic (0.59, 0.0039, P = 1.4e-05, N = 7824) (0.34, 0.0045, P = 0.93, N = 859)
rs3736438(T)/17:45486651 EFCAB13 (0.39, -0.0057, P = 3.2e-10, N = 7824) (0.29, 0.026, P = 0.63, N = 859)
rs12709393(T)/17:55292115 intergenic (0.63, 0.0053, P = 6.4e-09, N = 7824) (0.28, 0.00086, P = 0.99, N = 859)
rs989681(T)/17:67542493 MAP2K6 (0.52, 0.0041, P = 7.4e-06, N = 7824) (0.41, -0.016, P = 0.74, N = 859)
rs4793395(T)/17:68509948 intergenic (0.47, 0.0041, P = 6.6e-06, N = 7824) (0.3, -0.039, P = 0.46, N = 859)
rs12938026(T)/17:68582006 intergenic (0.61, 0.0046, P = 2.8e-07, N = 7824) (0.84, -0.064, P = 0.32, N = 859)
rs8070753(A)/17:9264728* STX8 (0.37, -0.0038, P = 2.8e-05, N = 7824) (0.59, -0.094, P = 0.063, N = 859)
rs12607576(T)/18:13246168 LDLRAD4 (0.54, -0.004, P = 6.7e-06, N = 7824) (0.88, -0.036, P = 0.63, N = 859)
rs9947578(A)/18:14773230 ANKRD30B (0.56, 0.0043, P = 3.9e-06, N = 7824) (0.75, 0.037, P = 0.52, N = 859)
rs175776(C)/18:28624148 DSC3 (0.58, 0.0037, P = 4e-05, N = 7824) (0.68, -0.094, P = 0.071, N = 859)
rs1786077(A)/18:34867844 CELF4 (0.55, 0.0038, P = 2.2e-05, N = 7824) (0.32, 0.0016, P = 0.97, N = 859)
rs1358331(T)/18:41180458 intergenic (0.51, -0.0039, P = 1.7e-05, N = 7824) (0.67, 0.044, P = 0.38, N = 859)
rs2362839(A)/18:42991252* SLC14A2 (0.6, -0.0041, P = 5.1e-06, N = 7824) (0.55, 0.042, P = 0.37, N = 859)
rs9960949(A)/18:46209558 CTIF (0.48, -0.0042, P = 8.8e-06, N = 7824) (0.72, 0.039, P = 0.47, N = 859)
rs515897(A)/18:55209506 intergenic (0.62, -0.0037, P = 4.8e-05, N = 7824) (0.28, -0.0084, P = 0.88, N = 859)
rs4940563(A)/18:60277715 intergenic (0.53, -0.005, P = 5.7e-07, N = 7824) (0.74, -0.037, P = 0.5, N = 859)
rs4436868(T)/18:61958609* RP11-146N18.1 (0.5, 0.0045, P = 4.3e-07, N = 7824) (0.37, -0.0061, P = 0.91, N = 859)
rs618153(A)/18:62753986 intergenic (0.35, 0.0039, P = 2e-05, N = 7824) (0.39, -0.061, P = 0.22, N = 859)
rs536279(A)/18:65497981 RP11-638L3.2 (0.39, -0.004, P = 1.3e-05, N = 7824) (0.16, -0.039, P = 0.55, N = 859)
rs8086262(A)/18:69227590 RP11-510D19.1 (0.66, -0.004, P = 1.5e-05, N = 7824) (0.61, -0.041, P = 0.42, N = 859)
rs492522(T)/18:6986638* LAMA1 (0.55, -0.0037, P = 3.6e-05, N = 7824) (0.46, 0.096, P = 0.041, N = 859)
rs12232577(A)/18:69966132 intergenic (0.91, -0.0074, P = 3.8e-05, N = 7824) (0.92, 0.018, P = 0.83, N = 859)
rs9952198(T)/18:71878838 RP11-669I1.1 (0.53, -0.0039, P = 2e-05, N = 7824) (0.45, -0.048, P = 0.34, N = 859)
rs1866732(A)/18:72933187 TSHZ1 (0.66, 0.0037, P = 4.7e-05, N = 7824) (0.42, 0.0042, P = 0.93, N = 859)
rs6506736(A)/18:76940235 ATP9B (0.52, 0.0042, P = 2.6e-06, N = 7824) (0.2, 0.038, P = 0.52, N = 859)
rs11085752(A)/19:11065409* intergenic (0.58, -0.004, P = 9.5e-06, N = 7824) (0.62, 0.016, P = 0.75, N = 859)
rs11085914(T)/19:14978191* AC005255.6 (0.55, -0.0042, P = 2.9e-06, N = 7824) (0.83, -0.11, P = 0.073, N = 859)
rs8099879(A)/19:17230287 MYO9B (0.38, 0.005, P = 5.7e-07, N = 7824) (0.24, -0.007, P = 0.9, N = 859)
rs287104(A)/19:34290995* KCTD15 (0.65, 0.0038, P = 4.1e-05, N = 7824) (0.79, 0.029, P = 0.61, N = 859)
rs2451996(A)/19:35544963 HPN (0.58, 0.0043, P = 1.7e-06, N = 7824) (0.27, 0.072, P = 0.19, N = 859)
rs1820690(A)/19:48490006 BSPH1 (0.61, -0.15, P = 2.7e-06, N = 1954) (0.77, 0.14, P = 0.013, N = 859)
rs1513628(A)/2:101338644* AC092168.4 (0.37, -0.004, P = 1.3e-05, N = 7824) (0.11, 0.07, P = 0.38, N = 859)
rs6542041(A)/2:112911923 FBLN7 (0.49, -0.0037, P = 4.6e-05, N = 7824) (0.52, 0.059, P = 0.22, N = 859)
rs17355679(T)/2:115964965 DPP10 (0.36, -0.004, P = 1e-05, N = 7824) (0.59, -0.034, P = 0.49, N = 859)
rs2577264(A)/2:11936798* LPIN1 (0.38, 0.0043, P = 2.1e-06, N = 7824) (0.11, 0.02, P = 0.8, N = 859)
rs2043885(T)/2:124856339 CNTNAP5 (0.42, 0.0038, P = 2.9e-05, N = 7824) (0.26, 0.022, P = 0.68, N = 859)
rs11899152(A)/2:125483741 CNTNAP5 (0.54, -0.0037, P = 4.7e-05, N = 7824) (0.45, -0.049, P = 0.3, N = 859)
rs7587616(A)/2:134708496* intergenic (0.47, -0.0037, P = 4.7e-05, N = 7824) (0.37, 0.067, P = 0.17, N = 859)
rs1427617(T)/2:137487339 intergenic (0.37, 0.0038, P = 2.9e-05, N = 7824) (0.39, -0.024, P = 0.64, N = 859)
rs6721330(A)/2:149858906 KIF5C (0.55, -0.0041, P = 4.9e-06, N = 7824) (0.19, 0.018, P = 0.78, N = 859)
rs2881873(T)/2:154524124 intergenic (0.46, -0.0037, P = 4e-05, N = 7824) (0.57, 0.011, P = 0.82, N = 859)
rs1446555(A)/2:158109405 GALNT5 (0.9, 0.008, P = 3.2e-06, N = 7824) (0.79, -0.00072, P = 0.99, N = 859)
rs1424937(A)/2:169566184 CERS6 (0.46, 0.0042, P = 2.3e-06, N = 7824) (0.16, 0.019, P = 0.77, N = 859)
rs2544371(A)/2:170227070 intergenic (0.56, 0.004, P = 8.7e-06, N = 7824) (0.58, -0.02, P = 0.69, N = 859)
rs2969327(T)/2:177422617* intergenic (0.43, -0.0039, P = 1.8e-05, N = 7824) (0.52, -0.033, P = 0.51, N = 859)
rs262273(C)/2:180911563 intergenic (0.39, -0.0042, P = 2.8e-06, N = 7824) (0.53, -0.051, P = 0.29, N = 859)
rs288332(A)/2:183625350* DNAJC10 (0.63, -0.0043, P = 1.8e-06, N = 7824) (0.81, -0.00021, P = 1, N = 859)
rs1981913(T)/2:205169149 DSTNP5 (0.62, 0.0039, P = 2.1e-05, N = 7824) (0.53, 0.035, P = 0.47, N = 859)
rs6435389(T)/2:208696325 PLEKHM3 (0.34, 0.0039, P = 2.1e-05, N = 7824) (0.22, 0.09, P = 0.14, N = 859)
rs7570090(T)/2:210880893* RPE (0.46, -0.0038, P = 3e-05, N = 7824) (0.38, 0.012, P = 0.8, N = 859)
rs12994785(A)/2:212857425* ERBB4 (0.55, 0.0039, P = 1.8e-05, N = 7824) (0.28, -0.044, P = 0.42, N = 859)
rs1250070(A)/2:216557733 LINC00607 (0.39, -0.0042, P = 8.6e-06, N = 7824) (0.28, 0.019, P = 0.72, N = 859)
rs2279014(T)/2:219261176* SLC11A1 (0.37, -0.005, P = 4.9e-08, N = 7824) (0.4, -0.12, P = 0.016, N = 859)
rs526897(A)/2:219433597 RQCD1 (0.61, 0.0038, P = 3.1e-05, N = 7824) (0.75, -0.05, P = 0.36, N = 859)
rs4674438(T)/2:220643119 intergenic (0.36, 0.0046, P = 2.9e-07, N = 7824) (0.6, -0.0078, P = 0.87, N = 859)
rs2710503(C)/2:222374699 EPHA4 (0.44, -0.0044, P = 1.7e-06, N = 7824) (0.13, -0.006, P = 0.94, N = 859)
rs9784110(T)/2:230215502 intergenic (0.61, -0.0042, P = 4e-06, N = 7824) (0.57, -0.11, P = 0.03, N = 859)
rs977041(A)/2:230350848 DNER (0.44, 0.0044, P = 1.3e-06, N = 7824) (0.47, -0.018, P = 0.71, N = 859)
rs2292871(A)/2:238499690 RAB17 (0.58, 0.0045, P = 7.7e-07, N = 7824) (0.22, 0.07, P = 0.23, N = 859)
rs12987376(T)/2:242917306 AC093642.3 (0.45, 0.0037, P = 3.6e-05, N = 7824) (0.2, -0.047, P = 0.43, N = 859)
rs4665406(T)/2:28445438 BRE (0.37, -0.0043, P = 1.9e-06, N = 7824) (0.25, 0.027, P = 0.63, N = 859)
rs7592700(A)/2:3480563* TRAPPC12 (0.47, -0.0037, P = 4.3e-05, N = 7824) (0.86, 0.15, P = 0.026, N = 859)
rs8179836(C)/2:42903239 MTA3 (0.63, 0.0048, P = 1.5e-07, N = 7824) (0.69, 0.014, P = 0.79, N = 859)
rs940052(A)/2:45981142 PRKCE (0.44, -0.0038, P = 2.2e-05, N = 7824) (0.52, -0.011, P = 0.82, N = 859)
rs1374749(A)/2:46596433* EPAS1 (0.44, 0.0037, P = 4.4e-05, N = 7824) (0.5, 0.053, P = 0.27, N = 859)
rs12473182(C)/2:49427446 intergenic (0.4, 0.0038, P = 2.4e-05, N = 7824) (0.45, 0.024, P = 0.61, N = 859)
rs735315(T)/2:51331157 AC007682.1 (0.49, 0.0054, P = 1.9e-09, N = 7824) (0.69, 0.0034, P = 0.95, N = 859)
rs7564248(A)/2:51379098 AC007682.1 (0.6, 0.0045, P = 7.4e-07, N = 7824) (0.56, 0.11, P = 0.024, N = 859)
rs7604464(A)/2:54389318 ACYP2 (0.97, 0.015, P = 5.9e-06, N = 7824) (0.67, 0.0079, P = 0.88, N = 859)
rs4669392(A)/2:5620952* intergenic (0.43, -0.004, P = 9.3e-06, N = 7824) (0.34, 0.011, P = 0.82, N = 859)
rs4672450(T)/2:61944571 intergenic (0.48, 0.0044, P = 1.4e-06, N = 7824) (0.2, 0.0017, P = 0.98, N = 859)
rs549386(T)/2:70667125 intergenic (0.61, -0.0043, P = 1.6e-06, N = 7824) (0.8, 0.019, P = 0.76, N = 859)
rs1345836(T)/2:8200042 LINC00299 (0.45, 0.0038, P = 2.9e-05, N = 7824) (0.64, 0.0087, P = 0.86, N = 859)
rs3097281(A)/2:8508404 LINC00299 (0.58, 0.0038, P = 2.3e-05, N = 7824) (0.56, 0.00028, P = 1, N = 859)
rs6709816(A)/2:85343124* intergenic (0.15, -0.0077, P = 1.9e-06, N = 7824) (0.22, -0.085, P = 0.15, N = 859)
rs7355681(A)/2:85911339 AC012454.4 (0.59, 0.0041, P = 4.9e-06, N = 7824) (0.72, 0.059, P = 0.27, N = 859)
rs6131084(T)/20:1090381 PSMF1 (0.56, 0.0038, P = 2.7e-05, N = 7824) (0.33, 0.041, P = 0.43, N = 859)
rs2327855(A)/20:14477175* MACROD2 (0.58, 0.004, P = 9.6e-06, N = 7824) (0.76, 0.00022, P = 1, N = 859)
rs8120307(T)/20:35803188 RPN2 (0.62, -0.0038, P = 2.5e-05, N = 7824) (0.35, 0.018, P = 0.71, N = 859)
rs6129167(T)/20:37689228 intergenic (0.57, 0.0039, P = 1.1e-05, N = 7824) (0.58, 0.052, P = 0.28, N = 859)
rs6129620(A)/20:39144286* intergenic (0.33, 0.0038, P = 4.6e-05, N = 7824) (0.15, 9.3e-05, P = 1, N = 859)
rs241642(A)/20:3929299 RNF24 (0.44, 0.0038, P = 2.2e-05, N = 7824) (0.71, -0.056, P = 0.28, N = 859)
rs3848713(T)/20:44470676* ACOT8 (0.41, -0.0044, P = 1.1e-06, N = 7824) (0.61, 0.043, P = 0.38, N = 859)
rs4811828(T)/20:55809047 BMP7 (0.88, 0.0077, P = 5.9e-06, N = 7824) (0.78, -0.081, P = 0.17, N = 859)
rs6025935(A)/20:56536168 RP13-379L11.2 (0.38, -0.0038, P = 3.4e-05, N = 7824) (0.24, 0.03, P = 0.59, N = 859)
rs163787(A)/20:57574463* CTSZ (0.18, 0.0065, P = 4.7e-05, N = 7824) (0.14, -0.023, P = 0.75, N = 859)
rs3905228(A)/20:58105747 intergenic (0.47, 0.0041, P = 9e-06, N = 7824) (0.32, 0.0032, P = 0.95, N = 859)
rs4591420(A)/21:16077143* intergenic (0.33, -0.0037, P = 4.6e-05, N = 7824) (0.19, -0.098, P = 0.12, N = 859)
rs1028981(A)/21:21668483 intergenic (0.39, -0.005, P = 5.7e-07, N = 7824) (0.41, -0.0064, P = 0.9, N = 859)
rs1041755(T)/21:33238952* intergenic (0.37, 0.004, P = 1.2e-05, N = 7824) (0.49, 0.074, P = 0.13, N = 859)
rs8134847(T)/21:35020161 ITSN1 (0.4, 0.0041, P = 8.4e-06, N = 7824) (0.34, -0.038, P = 0.45, N = 859)
rs2156411(A)/21:37580807 DOPEY2 (0.64, 0.0038, P = 3.1e-05, N = 7824) (0.85, 0.027, P = 0.69, N = 859)
rs378999(T)/21:40434320 intergenic (0.64, -0.0044, P = 1.2e-06, N = 7824) (0.62, 0.029, P = 0.56, N = 859)
rs8127674(A)/21:42882003 TMPRSS2 (0.59, -0.0041, P = 5.9e-06, N = 7824) (0.67, 0.063, P = 0.22, N = 859)
rs220168(A)/21:43554571* UMODL1 (0.52, -0.004, P = 9.3e-06, N = 7824) (0.52, 0.061, P = 0.2, N = 859)
rs12627165(A)/21:46736694 intergenic (0.35, 0.0044, P = 3.5e-06, N = 7824) (0.64, 0.061, P = 0.2, N = 859)
rs9613019(T)/22:26174397 MYO18B (0.41, -0.0041, P = 7.4e-06, N = 7824) (0.72, -0.019, P = 0.73, N = 859)
rs137181(A)/22:26666246 SEZ6L (0.51, -0.0037, P = 3.5e-05, N = 7824) (0.61, -0.061, P = 0.23, N = 859)
rs5999027(T)/22:33989858* LARGE (0.43, -0.004, P = 9.5e-06, N = 7824) (0.29, -0.0044, P = 0.93, N = 859)
rs132667(A)/22:36565029* Z95114.3 (0.54, 0.0038, P = 2.4e-05, N = 7824) (0.64, -0.026, P = 0.6, N = 859)
rs10854693(A)/22:37252010* CTA-833B7.2 (0.56, -0.0039, P = 3.4e-05, N = 7824) (0.89, -0.059, P = 0.45, N = 859)
rs140572(A)/22:45451727* intergenic (0.51, 0.0047, P = 2.2e-07, N = 7824) (0.15, -0.035, P = 0.61, N = 859)
rs131919(T)/22:47447437* TBC1D22A (0.33, -0.0046, P = 9e-07, N = 7824) (0.41, -0.0032, P = 0.95, N = 859)
rs9838540(A)/3:101986003* ZPLD1 (0.61, 0.0047, P = 1.8e-07, N = 7824) (0.21, 0.064, P = 0.27, N = 859)
rs6437539(T)/3:104513265 intergenic (0.63, -0.0039, P = 2e-05, N = 7824) (0.66, 0.00063, P = 0.99, N = 859)
rs2924149(T)/3:10991346 intergenic (0.38, 0.0038, P = 2.6e-05, N = 7824) (0.1, -0.051, P = 0.52, N = 859)
rs4831113(T)/3:115308015* intergenic (0.39, -0.0038, P = 2.8e-05, N = 7824) (0.87, 0.032, P = 0.65, N = 859)
rs201908613(CT)/3:116189185 LSAMP (0.017, 0.29, P = 2.3e-06, N = 1954) (0.041, 0.044, P = 0.72, N = 859)
rs9873519(T)/3:124921457* SLC12A8 (0.54, 0.0037, P = 3.4e-05, N = 7824) (0.31, 0.075, P = 0.15, N = 859)
rs1225019(A)/3:131669077 CPNE4 (0.58, -0.0043, P = 1.6e-06, N = 7824) (0.32, -0.067, P = 0.19, N = 859)
rs13059536(T)/3:139578650 RP11-166D18.1 (0.11, 0.007, P = 4.1e-05, N = 7824) (0.14, 0.067, P = 0.34, N = 859)
rs6795522(T)/3:143101289* SLC9A9 (0.61, 0.0037, P = 4.9e-05, N = 7824) (0.63, -0.035, P = 0.49, N = 859)
rs9872790(T)/3:143238874 SLC9A9 (0.5, -0.0039, P = 1.9e-05, N = 7824) (0.4, 0.028, P = 0.56, N = 859)
rs355748(T)/3:153964496 ARHGEF26 (0.38, -0.0038, P = 3.3e-05, N = 7824) (0.41, 0.0072, P = 0.88, N = 859)
rs9942113(A)/3:156231801 KCNAB1 (0.38, -0.0049, P = 6e-08, N = 7824) (0.55, 0.0036, P = 0.94, N = 859)
rs11707952(A)/3:158665225 intergenic (0.57, -0.0046, P = 3.9e-07, N = 7824) (0.56, -0.042, P = 0.38, N = 859)
rs4525910(A)/3:159646612 IL12A-AS1 (0.41, -0.0043, P = 2.2e-06, N = 7824) (0.22, -0.071, P = 0.23, N = 859)
rs17236487(T)/3:160171926 TRIM59 (0.78, 0.0062, P = 4.7e-05, N = 7824) (0.83, -0.061, P = 0.34, N = 859)
rs9863328(T)/3:164360829 intergenic (0.43, 0.004, P = 9.1e-06, N = 7824) (0.34, -0.052, P = 0.29, N = 859)
rs1430435(T)/3:169079193 MECOM (0.49, 0.0044, P = 1.3e-06, N = 7824) (0.38, -0.021, P = 0.67, N = 859)
rs6793266(T)/3:175102338* NAALADL2 (0.39, -0.0043, P = 2.9e-06, N = 7824) (0.34, 0.13, P = 0.011, N = 859)
rs9842133(T)/3:179664102 PEX5L (0.66, 0.0064, P = 4.2e-12, N = 7824) (0.47, 0.033, P = 0.5, N = 859)
rs6785807(A)/3:181718601 RP11-416O18.1 (0.12, -0.0068, P = 3.6e-05, N = 7824) (0.054, -0.094, P = 0.38, N = 859)
rs1026527(T)/3:22609529 intergenic (0.58, 0.0038, P = 2e-05, N = 7824) (0.62, -0.07, P = 0.16, N = 859)
rs6550934(A)/3:25052333* AC133680.1 (0.47, 0.0038, P = 2.3e-05, N = 7824) (0.76, -0.036, P = 0.52, N = 859)
rs294280(T)/3:31131692 intergenic (0.39, 0.0042, P = 3.4e-06, N = 7824) (0.52, 0.057, P = 0.25, N = 859)
rs968103(T)/3:34234573 AC018359.1 (0.45, 0.0043, P = 1.5e-06, N = 7824) (0.78, -0.02, P = 0.72, N = 859)
rs1916227(A)/3:34847097 intergenic (0.48, -0.004, P = 1e-05, N = 7824) (0.6, 0.043, P = 0.38, N = 859)
rs7632967(A)/3:34906302 intergenic (0.55, -0.0043, P = 1.7e-06, N = 7824) (0.31, 6.6e-05, P = 1, N = 859)
rs769809(A)/3:3767212 SUMF1 (0.57, 0.0046, P = 3.5e-07, N = 7824) (0.75, -0.0082, P = 0.88, N = 859)
rs533980308(AT)/3:49106976 QRICH1 (0.021, -0.86, P = 9.9e-06, N = 1954) (0.41, 0.061, P = 0.22, N = 859)
rs11915024(T)/3:59492480* RP11-719N22.2 (0.4, -0.0044, P = 9.6e-07, N = 7824) (0.61, -0.013, P = 0.8, N = 859)
rs9874660(A)/3:61931353 PTPRG (0.91, 0.015, P = 2.2e-05, N = 7824) (0.84, 0.064, P = 0.34, N = 859)
rs6797048(A)/3:68904763 FAM19A4 (0.62, -0.0038, P = 3e-05, N = 7824) (0.8, 0.024, P = 0.69, N = 859)
rs6798065(T)/3:75388243 MYLKP1 (0.34, -0.0038, P = 2.6e-05, N = 7824) (0.58, -0.011, P = 0.82, N = 859)
rs9880736(A)/3:79318988 ROBO1 (0.54, -0.0044, P = 1.5e-06, N = 7824) (0.91, -0.054, P = 0.5, N = 859)
rs1431156(G)/3:88082149 intergenic (0.98, -0.35, P = 3.6e-06, N = 1954) (0.72, 0.074, P = 0.18, N = 859)
rs9829940(T)/3:96167649 intergenic (0.56, 0.0038, P = 2e-05, N = 7824) (0.83, -0.00075, P = 0.99, N = 859)
rs9819702(T)/3:97886592 OR5H15 (0.36, -0.0042, P = 5.2e-06, N = 7824) (0.37, -0.058, P = 0.24, N = 859)
rs1114130(T)/4:101363516* EMCN (0.34, -0.0042, P = 4.3e-06, N = 7824) (0.41, -0.088, P = 0.069, N = 859)
rs11722041(T)/4:115411284 intergenic (0.41, 0.0039, P = 1.8e-05, N = 7824) (0.061, 0.061, P = 0.55, N = 859)
rs12510909(T)/4:139206509 RP11-733C7.1 (0.53, -0.0043, P = 1.8e-06, N = 7824) (0.72, -0.027, P = 0.61, N = 859)
rs11930385(T)/4:146845752* ZNF827 (0.4, -0.0043, P = 2.1e-06, N = 7824) (0.69, -0.045, P = 0.4, N = 859)
rs7662505(A)/4:147982321 intergenic (0.4, -0.004, P = 1e-05, N = 7824) (0.39, 0.018, P = 0.72, N = 859)
rs9997562(T)/4:14896179* intergenic (0.52, 0.0043, P = 1.9e-06, N = 7824) (0.27, -0.075, P = 0.18, N = 859)
rs6535870(T)/4:153639925 intergenic (0.65, -0.005, P = 5.5e-08, N = 7824) (0.42, 0.038, P = 0.43, N = 859)
rs2286460(A)/4:15964040* FGFBP2 (0.54, -0.0045, P = 8.4e-07, N = 7824) (0.43, 0.012, P = 0.8, N = 859)
rs195934(A)/4:163582000 intergenic (0.64, 0.0039, P = 2e-05, N = 7824) (0.71, 0.027, P = 0.62, N = 859)
rs4860022(T)/4:167693875 SPOCK3 (0.34, -0.0055, P = 9.6e-10, N = 7824) (0.28, 0.066, P = 0.24, N = 859)
rs12503744(A)/4:172203928* intergenic (0.02, -0.034, P = 4.8e-06, N = 7824) (0.32, -0.014, P = 0.78, N = 859)
rs7686890(T)/4:178411431 RP11-130F10.1 (0.39, 0.004, P = 8e-06, N = 7824) (0.74, -0.057, P = 0.3, N = 859)
rs2309339(C)/4:181350035 intergenic (0.65, 0.0041, P = 7.1e-06, N = 7824) (0.73, 0.0019, P = 0.97, N = 859)
rs1872445(T)/4:186504058* SORBS2 (0.55, -0.0039, P = 1.3e-05, N = 7824) (0.87, 0.068, P = 0.34, N = 859)
rs10489008(A)/4:31718284* intergenic (0.49, 0.0045, P = 4.6e-07, N = 7824) (0.87, -0.047, P = 0.52, N = 859)
rs12500588(A)/4:37111552 RP11-103J17.1 (0.09, -0.0076, P = 1.5e-05, N = 7824) (0.44, -0.095, P = 0.047, N = 859)
rs10517472(T)/4:38287333* RP11-600L4.1 (0.38, 0.0037, P = 4.3e-05, N = 7824) (0.19, -0.001, P = 0.99, N = 859)
rs7665019(T)/4:40600905 RBM47 (0.55, 0.0038, P = 2.2e-05, N = 7824) (0.74, -0.016, P = 0.76, N = 859)
rs4861126(C)/4:41643057 LIMCH1 (0.41, 0.0043, P = 1.6e-06, N = 7824) (0.47, -0.043, P = 0.38, N = 859)
rs7673523(C)/4:4688246 STX18-AS1 (0.53, 0.0037, P = 3.6e-05, N = 7824) (0.61, -0.016, P = 0.75, N = 859)
rs1509657(T)/4:48213011* TEC (0.46, 0.0041, P = 6.3e-06, N = 7824) (0.65, 0.015, P = 0.77, N = 859)
rs6554156(T)/4:55042554 FIP1L1 (0.4, 0.0044, P = 1.1e-06, N = 7824) (0.42, 0.062, P = 0.21, N = 859)
rs2100765(C)/4:60855621 intergenic (0.59, 0.0039, P = 1.5e-05, N = 7824) (0.28, 0.026, P = 0.63, N = 859)
rs6852374(A)/4:61370159 intergenic (0.51, 0.0041, P = 4.4e-06, N = 7824) (0.44, 0.0034, P = 0.94, N = 859)
rs1390746(A)/4:79451461 FRAS1 (0.55, 0.0037, P = 3.3e-05, N = 7824) (0.3, 0.022, P = 0.67, N = 859)
rs7435034(A)/4:88146267 KLHL8 (0.36, -0.0042, P = 3.4e-06, N = 7824) (0.18, 0.0057, P = 0.93, N = 859)
rs13434630(A)/4:88464872* intergenic (0.46, -0.0039, P = 1.2e-05, N = 7824) (0.47, -0.018, P = 0.7, N = 859)
rs2120372(A)/4:90983723* intergenic (0.59, -0.0037, P = 4.2e-05, N = 7824) (0.61, 0.021, P = 0.68, N = 859)
rs7732790(A)/5:103428431* RP11-138J23.1 (0.59, -0.0042, P = 3.7e-06, N = 7824) (0.43, -0.013, P = 0.79, N = 859)
rs2962321(T)/5:10577895 ANKRD33B (0.9, -0.0077, P = 6e-06, N = 7824) (0.85, 0.044, P = 0.52, N = 859)
rs10065061(T)/5:107916909 intergenic (0.52, 0.0037, P = 4.1e-05, N = 7824) (0.3, -0.064, P = 0.22, N = 859)
rs461231(T)/5:110734739 CAMK4 (0.6, -0.0037, P = 4e-05, N = 7824) (0.77, 0.033, P = 0.58, N = 859)
rs1366201(A)/5:115321833 AQPEP (0.6, 0.0037, P = 3.9e-05, N = 7824) (0.84, -0.051, P = 0.45, N = 859)
rs246946(T)/5:126652742 MEGF10 (0.68, 0.0041, P = 9.3e-06, N = 7824) (0.69, 0.026, P = 0.62, N = 859)
rs6866597(T)/5:128877617* ADAMTS19 (0.52, 0.0042, P = 3.6e-06, N = 7824) (0.12, 0.064, P = 0.38, N = 859)
rs10900805(A)/5:131580851* P4HA2 (0.1, -0.007, P = 3.8e-05, N = 7824) (0.11, -0.076, P = 0.33, N = 859)
rs7737937(A)/5:131614981* P4HA2 (0.15, -0.011, P = 4.9e-11, N = 7824) (0.19, 0.066, P = 0.3, N = 859)
rs419291(T)/5:131633355* SLC22A4 (0.37, 0.0079, P = 3.1e-18, N = 7824) (0.22, 0.1, P = 0.086, N = 859)
rs6596361(T)/5:136311770 SPOCK1 (0.59, 0.0044, P = 9.2e-07, N = 7824) (0.58, -0.033, P = 0.5, N = 859)
rs1368388(A)/5:147897161* HTR4 (0.42, -0.0041, P = 4.6e-06, N = 7824) (0.64, -0.035, P = 0.48, N = 859)
rs6862024(A)/5:150428871 TNIP1 (0.37, -0.0055, P = 9e-10, N = 7824) (0.089, 0.0067, P = 0.94, N = 859)
rs6877344(T)/5:150742650* CTB-23I7.1 (0.38, 0.004, P = 1e-05, N = 7824) (0.3, -0.021, P = 0.69, N = 859)
rs1317661(A)/5:151647363 CTB-12O2.1 (0.48, 0.0043, P = 1.9e-06, N = 7824) (0.35, -0.0035, P = 0.94, N = 859)
rs753768(A)/5:152516889 AC091969.1 (0.42, 0.0039, P = 1.4e-05, N = 7824) (0.39, 2e-05, P = 1, N = 859)
rs9313491(C)/5:156621905 ITK (0.64, 0.0047, P = 6.1e-07, N = 7824) (0.7, 0.026, P = 0.62, N = 859)
rs17651643(A)/5:16892438* MYO10 (0.1, -0.011, P = 1.3e-05, N = 7824) (0.23, -0.065, P = 0.25, N = 859)
rs2471005(A)/5:174882207* snoU13 (0.39, 0.004, P = 1e-05, N = 7824) (0.14, 0.091, P = 0.18, N = 859)
rs4866725(T)/5:2164174 intergenic (0.56, -0.0038, P = 2.3e-05, N = 7824) (0.77, -0.02, P = 0.73, N = 859)
rs899584(T)/5:26826799 intergenic (0.36, -0.0047, P = 2.9e-07, N = 7824) (0.58, 0.07, P = 0.15, N = 859)
rs13162168(A)/5:30222534 intergenic (0.38, -0.0041, P = 6.4e-06, N = 7824) (0.24, -0.044, P = 0.45, N = 859)
rs4242263(A)/5:36415364 intergenic (0.36, 0.0038, P = 2.7e-05, N = 7824) (0.55, 0.079, P = 0.11, N = 859)
rs42864(C)/5:39283776 C9 (0.64, -0.0039, P = 2.4e-05, N = 7824) (0.87, -0.0092, P = 0.9, N = 859)
rs1479614(A)/5:50823338 intergenic (0.61, -0.0048, P = 9.9e-08, N = 7824) (0.82, -0.097, P = 0.12, N = 859)
rs2291631(A)/5:75013036 POC5 (0.05, -0.011, P = 1.3e-05, N = 7824) (0.038, -0.13, P = 0.31, N = 859)
rs1392482(T)/5:7555561 ADCY2 (0.4, -0.0039, P = 1.4e-05, N = 7824) (0.25, -0.0029, P = 0.96, N = 859)
rs13182512(A)/5:78573790* JMY (0.38, -0.005, P = 3.4e-08, N = 7824) (0.62, 0.057, P = 0.25, N = 859)
rs11750489(A)/5:80391253 RASGRF2 (0.89, 0.0097, P = 4.9e-05, N = 7824) (0.98, 0.15, P = 0.36, N = 859)
rs1827396(A)/5:81975108 intergenic (0.43, -0.0038, P = 3.2e-05, N = 7824) (0.64, -0.054, P = 0.29, N = 859)
rs699554(T)/5:87022350 CTD-2316B1.2 (0.43, 0.0038, P = 3.2e-05, N = 7824) (0.5, 0.016, P = 0.73, N = 859)
rs11267778(GCCTCTGCCCATGAC)/6:108384189 OSTM1 (0.019, -0.15, P = 4.5e-06, N = 1954) (0.99, 0.013, P = 0.95, N = 859)
rs4713396(A)/6:11312130 NEDD9 (0.45, -0.0044, P = 1.2e-06, N = 7824) (0.6, -0.044, P = 0.39, N = 859)
rs10872303(T)/6:126255034 NCOA7 (0.53, 0.004, P = 1.1e-05, N = 7824) (0.42, -0.037, P = 0.44, N = 859)
rs6917098(A)/6:132925613 TAAR3 (0.61, 0.0038, P = 3.1e-05, N = 7824) (0.57, 0.01, P = 0.83, N = 859)
rs459625(T)/6:134260676 intergenic (0.43, -0.0049, P = 5.2e-08, N = 7824) (0.84, 0.16, P = 0.017, N = 859)
rs6908972(T)/6:134684613* intergenic (0.082, -0.009, P = 8e-07, N = 7824) (0.13, 0.062, P = 0.38, N = 859)
rs4267967(T)/6:135272477 ALDH8A1 (0.56, 0.0037, P = 3.3e-05, N = 7824) (0.52, 0.064, P = 0.18, N = 859)
rs7760148(A)/6:140201675* RP5-899B16.2 (0.36, -0.0042, P = 3.4e-06, N = 7824) (0.52, 0.092, P = 0.055, N = 859)
rs1327674(T)/6:147100481* ADGB (0.43, -0.0037, P = 3.8e-05, N = 7824) (0.24, -0.015, P = 0.79, N = 859)
rs12201109(A)/6:149240393 UST (0.37, -0.0045, P = 1.1e-06, N = 7824) (0.3, -0.044, P = 0.41, N = 859)
rs12197879(T)/6:151895777* CCDC170 (0.6, -0.0044, P = 1.2e-06, N = 7824) (0.16, -0.022, P = 0.73, N = 859)
rs9383693(T)/6:154474871 IPCEF1 (0.55, -0.0042, P = 3.6e-06, N = 7824) (0.53, 0.073, P = 0.14, N = 859)
rs2504927(T)/6:160860430* SLC22A3 (0.44, -0.0041, P = 4.3e-06, N = 7824) (0.47, -0.092, P = 0.058, N = 859)
rs6915537(A)/6:16900872 intergenic (0.41, 0.0038, P = 2.5e-05, N = 7824) (0.31, -0.027, P = 0.6, N = 859)
rs9466453(A)/6:22735375 intergenic (0.52, 0.0038, P = 2.1e-05, N = 7824) (0.46, 0.036, P = 0.46, N = 859)
rs9467703(A)/6:26318903* HIST1H3PS1 (0.37, -0.0045, P = 8.3e-07, N = 7824) (0.098, -0.063, P = 0.44, N = 859)
rs2235232(A)/6:27326863 ZNF204P (0.54, 0.0039, P = 1.3e-05, N = 7824) (0.7, -0.031, P = 0.56, N = 859)
rs1610649(T)/6:29768917* HLA-P (0.61, -0.0049, P = 7.9e-08, N = 7824) (0.52, 0.076, P = 0.12, N = 859)
rs9394368(C)/6:36630525 intergenic (0.35, -0.0037, P = 4.7e-05, N = 7824) (0.56, -0.034, P = 0.49, N = 859)
rs1109773(C)/6:39289164 KCNK16 (0.37, 0.004, P = 9e-06, N = 7824) (0.47, 0.041, P = 0.4, N = 859)
rs2396004(A)/6:43355851* intergenic (0.44, 0.0049, P = 4.3e-08, N = 7824) (0.86, 0.094, P = 0.16, N = 859)
rs6937910(T)/6:51682409 PKHD1 (0.53, -0.0043, P = 1.4e-06, N = 7824) (0.53, 0.013, P = 0.79, N = 859)
rs685893(A)/6:53961784 MLIP (0.64, -0.0037, P = 4.4e-05, N = 7824) (0.53, 0.017, P = 0.73, N = 859)
rs852941(A)/6:72160400 RP1-288M22.2 (0.42, 0.0037, P = 3.7e-05, N = 7824) (0.56, 0.049, P = 0.34, N = 859)
rs1482567(T)/6:72671565 RIMS1 (0.62, 0.004, P = 9.3e-06, N = 7824) (0.62, -0.0029, P = 0.95, N = 859)
rs9351906(A)/6:72987855 RIMS1 (0.4, 0.0037, P = 4.1e-05, N = 7824) (0.27, 0.032, P = 0.56, N = 859)
rs2789599(A)/6:73105163 RIMS1 (0.5, 0.0043, P = 2.2e-06, N = 7824) (0.45, 0.095, P = 0.046, N = 859)
rs2173986(C)/6:8330781* RP11-203H2.1 (0.5, -0.0039, P = 1.5e-05, N = 7824) (0.22, -0.0065, P = 0.91, N = 859)
rs9450000(A)/6:85373267 intergenic (0.89, -0.0072, P = 1.8e-05, N = 7824) (0.77, 0.075, P = 0.19, N = 859)
rs998775(A)/6:93859619 intergenic (0.59, -0.004, P = 1.2e-05, N = 7824) (0.68, 0.0054, P = 0.92, N = 859)
rs2704975(A)/7:106065174 CTB-111H14.1 (0.39, 0.0037, P = 4.3e-05, N = 7824) (0.58, 0.01, P = 0.83, N = 859)
rs2189438(A)/7:10719393 intergenic (0.51, 0.0041, P = 4.5e-06, N = 7824) (0.45, 0.041, P = 0.39, N = 859)
rs10255200(T)/7:123679743 RP5-921G16.1 (0.48, -0.0039, P = 1.1e-05, N = 7824) (0.45, 0.022, P = 0.66, N = 859)
rs983849(T)/7:125248586 intergenic (0.43, 0.0039, P = 1.3e-05, N = 7824) (0.63, 0.011, P = 0.83, N = 859)
rs2106185(T)/7:127184315 intergenic (0.39, 0.009, P = 1.9e-05, N = 7824) (0.04, 0.034, P = 0.79, N = 859)
rs13231650(T)/7:141398942 KIAA1147 (0.43, 0.0041, P = 4.8e-06, N = 7824) (0.19, -0.035, P = 0.58, N = 859)
rs6948399(C)/7:144175166 TPK1 (0.64, 0.54, P = 3.5e-06, N = 1954) (0.31, 0.12, P = 0.022, N = 859)
rs17585288(T)/7:146226654 CNTNAP2 (0.91, -0.0099, P = 1.2e-05, N = 7824) (0.98, 0.065, P = 0.73, N = 859)
rs2961253(T)/7:15175427 intergenic (0.55, -0.005, P = 5.7e-07, N = 7824) (0.67, 0.05, P = 0.32, N = 859)
rs9654697(T)/7:155395948 intergenic (0.6, 0.004, P = 1.2e-05, N = 7824) (0.31, 0.05, P = 0.34, N = 859)
rs115807806(T)/7:157921957 PTPRN2 (0.085, -0.15, P = 4.9e-06, N = 1954) (0.02, 0.24, P = 0.16, N = 859)
rs10231585(T)/7:20182020 MACC1 (0.57, -0.0039, P = 1.8e-05, N = 7824) (0.29, 0.041, P = 0.43, N = 859)
rs13238939(T)/7:21685861* DNAH11 (0.51, 0.004, P = 1e-05, N = 7824) (0.16, 0.01, P = 0.88, N = 859)
rs3757440(A)/7:2272936 MAD1L1 (0.62, 0.0037, P = 4.7e-05, N = 7824) (0.65, -0.044, P = 0.38, N = 859)
rs1544412(T)/7:26498968 AC004540.5 (0.36, -0.0043, P = 2.7e-06, N = 7824) (0.42, -0.06, P = 0.21, N = 859)
rs12484(T)/7:2768626* GNA12 (0.43, -0.005, P = 5.7e-07, N = 7824) (0.6, 0.015, P = 0.76, N = 859)
rs4259315(G)/7:28907437 intergenic (0.49, -0.17, P = 7.9e-06, N = 1954) (0.13, -0.014, P = 0.85, N = 859)
rs4722438(A)/7:3155813* intergenic (0.44, 0.0044, P = 1.2e-06, N = 7824) (0.56, 0.061, P = 0.21, N = 859)
rs10275028(T)/7:34889222 NPSR1 (0.65, 0.0046, P = 4.9e-07, N = 7824) (0.62, 0.0098, P = 0.84, N = 859)
rs4433042(A)/7:43522684 HECW1 (0.56, 0.0037, P = 3.4e-05, N = 7824) (0.82, 0.057, P = 0.38, N = 859)
rs1866570(C)/7:45166118 intergenic (0.58, -0.004, P = 7.8e-06, N = 7824) (0.4, -0.014, P = 0.77, N = 859)
rs3973242(C)/7:75130325 AC018720.10 (0.87, -0.23, P = 8.6e-07, N = 1954) (0.99, -0.13, P = 0.51, N = 859)
rs2714684(C)/7:79291370 intergenic (0.54, -0.004, P = 8.8e-06, N = 7824) (0.56, 0.024, P = 0.61, N = 859)
rs1285441(C)/7:9219283 intergenic (0.061, -0.24, P = 4.6e-07, N = 1954) (0.15, 0.0083, P = 0.9, N = 859)
rs4634560(T)/7:94332392 intergenic (0.91, -0.009, P = 6.8e-06, N = 7824) (0.85, 0.00044, P = 0.99, N = 859)
rs10239136(T)/7:9571623* intergenic (0.6, 0.0044, P = 1.5e-06, N = 7824) (0.45, -0.051, P = 0.29, N = 859)
rs7799978(A)/7:9716062 intergenic (0.82, 0.0072, P = 4.5e-06, N = 7824) (0.63, -0.02, P = 0.7, N = 859)
rs724752(T)/7:98573295 TRRAP (0.37, 0.0043, P = 2.7e-06, N = 7824) (0.19, 0.14, P = 0.02, N = 859)
rs34742539(A)/8:113805521 CSMD3 (0.018, -0.032, P = 3.7e-05, N = 7824) (0.017, 0.12, P = 0.52, N = 859)
rs2068985(C)/8:114053798 CSMD3 (0.35, -0.0041, P = 6.8e-06, N = 7824) (0.72, 0.002, P = 0.97, N = 859)
rs7836397(A)/8:121875083 intergenic (0.43, -0.0038, P = 3.4e-05, N = 7824) (0.069, -0.081, P = 0.39, N = 859)
rs7461025(T)/8:127654091 RP11-89K10.1 (0.59, 0.0043, P = 2.7e-06, N = 7824) (0.2, -0.021, P = 0.73, N = 859)
rs10481187(T)/8:132479119 intergenic (0.37, 0.0045, P = 9.7e-07, N = 7824) (0.36, 0.035, P = 0.49, N = 859)
rs273401(A)/8:132525949 intergenic (0.41, 0.0039, P = 2.1e-05, N = 7824) (0.4, -0.0068, P = 0.89, N = 859)
rs865488(T)/8:133938622 TG (0.68, -0.0041, P = 6.6e-06, N = 7824) (0.6, 0.041, P = 0.41, N = 859)
rs10111368(A)/8:134646398 intergenic (0.55, -0.0041, P = 5e-06, N = 7824) (0.75, 0.044, P = 0.43, N = 859)
rs10505611(T)/8:134662095 intergenic (0.85, 0.0069, P = 2.3e-05, N = 7824) (0.97, -0.12, P = 0.43, N = 859)
rs13275417(A)/8:138365307 intergenic (0.53, 0.0038, P = 2.9e-05, N = 7824) (0.38, -0.031, P = 0.53, N = 859)
rs6988796(T)/8:139312435 FAM135B (0.36, 0.0093, P = 1.5e-05, N = 7824) (0.42, -0.016, P = 0.74, N = 859)
rs7462991(T)/8:17934029* ASAH1 (0.92, 0.0096, P = 4e-05, N = 7824) (0.86, -0.16, P = 0.02, N = 859)
rs6984824(A)/8:1910078 ARHGEF10 (0.1, -0.0075, P = 1.5e-05, N = 7824) (0.14, -0.057, P = 0.41, N = 859)
rs6988339(A)/8:32545916 NRG1 (0.61, -0.0039, P = 2.1e-05, N = 7824) (0.9, -0.17, P = 0.034, N = 859)
rs7817745(T)/8:38550136 intergenic (0.61, -0.0039, P = 1.8e-05, N = 7824) (0.53, 0.032, P = 0.51, N = 859)
rs341815(A)/8:49978424* C8orf22 (0.36, 0.0038, P = 3e-05, N = 7824) (0.25, 0.057, P = 0.3, N = 859)
rs1160269(T)/8:5516034* RP11-281H11.1 (0.44, -0.0039, P = 1.4e-05, N = 7824) (0.17, -0.043, P = 0.48, N = 859)
rs761722563(CAATA)/8:59764368 TOX (0.024, 0.14, P = 1.7e-06, N = 1954) (0.22, 0.03, P = 0.6, N = 859)
rs12541401(A)/8:62805280* RP11-705O24.2 (0.46, -0.0039, P = 1.1e-05, N = 7824) (0.14, 0.026, P = 0.7, N = 859)
rs10095757(C)/8:73043160 intergenic (0.6, 0.0038, P = 2.4e-05, N = 7824) (0.54, 0.021, P = 0.66, N = 859)
rs4568622(T)/8:85779998 RALYL (0.58, -0.0039, P = 1.4e-05, N = 7824) (0.29, -0.023, P = 0.66, N = 859)
rs6468523(T)/8:87900893 CNBD1 (0.48, 0.0039, P = 1.9e-05, N = 7824) (0.29, 0.071, P = 0.18, N = 859)
rs7837480(A)/8:94468378 LINC00535 (0.48, -0.004, P = 9.3e-06, N = 7824) (0.64, -0.037, P = 0.48, N = 859)
rs6471514(T)/8:96100272 RP11-320N21.2 (0.54, -0.0042, P = 2.7e-06, N = 7824) (0.61, 0.05, P = 0.31, N = 859)
rs7815790(A)/8:98902730 MATN2 (0.39, -0.0039, P = 1.8e-05, N = 7824) (0.5, -0.0076, P = 0.87, N = 859)
rs2780956(A)/9:103348634 MURC (0.43, -0.0037, P = 4.5e-05, N = 7824) (0.26, -0.053, P = 0.34, N = 859)
rs10820588(T)/9:106722204 intergenic (0.56, 0.0048, P = 1.6e-07, N = 7824) (0.38, -0.059, P = 0.24, N = 859)
rs1507515(A)/9:106989653* intergenic (0.54, 0.0041, P = 5.2e-06, N = 7824) (0.6, -0.015, P = 0.76, N = 859)
rs2777788(A)/9:107662701* ABCA1 (0.64, -0.005, P = 5.7e-07, N = 7824) (0.27, -0.021, P = 0.7, N = 859)
rs72694252(G)/9:11126335 intergenic (0.18, 0.2, P = 3.4e-06, N = 1954) (0.048, -0.033, P = 0.76, N = 859)
rs1339881(A)/9:111488532 intergenic (0.68, -0.0038, P = 2.7e-05, N = 7824) (0.58, -0.0021, P = 0.97, N = 859)
rs7026148(T)/9:115636588 SNX30 (0.39, -0.0045, P = 4.5e-07, N = 7824) (0.33, -0.014, P = 0.8, N = 859)
rs80794(T)/9:118993074* PAPPA (0.41, 0.004, P = 1.1e-05, N = 7824) (0.51, 0.078, P = 0.098, N = 859)
rs1929425(T)/9:12367988* intergenic (0.39, 0.0043, P = 2.1e-06, N = 7824) (0.71, -0.066, P = 0.21, N = 859)
rs10818924(T)/9:126913862* intergenic (0.63, -0.0045, P = 6.1e-07, N = 7824) (0.57, -0.021, P = 0.65, N = 859)
rs2491102(C)/9:130313343 FAM129B (0.45, 0.0039, P = 2.1e-05, N = 7824) (0.63, -0.011, P = 0.82, N = 859)
rs3003607(A)/9:130968398 DNM1 (0.39, -0.004, P = 1e-05, N = 7824) (0.84, 0.021, P = 0.75, N = 859)
rs482275(T)/9:135351031 C9orf171 (0.57, 0.0041, P = 7.6e-06, N = 7824) (0.84, 0.018, P = 0.78, N = 859)
rs13284789(T)/9:138581671 SOHLH1 (0.14, 0.0079, P = 9.2e-06, N = 7824) (0.022, -0.12, P = 0.45, N = 859)
rs7867510(A)/9:15353410 RN7SL157P (0.16, 0.0068, P = 1.7e-05, N = 7824) (0.11, 0.084, P = 0.28, N = 859)
rs7038757(T)/9:16222474 C9orf92 (0.65, 0.0041, P = 6.1e-06, N = 7824) (0.27, -0.00024, P = 1, N = 859)
rs641522(A)/9:22756895 RP11-399D6.2 (0.54, 0.004, P = 1.1e-05, N = 7824) (0.88, -0.035, P = 0.64, N = 859)
rs3842979(A)/9:28359979* LINGO2 (0.62, -0.0041, P = 1e-05, N = 7824) (0.4, -0.026, P = 0.6, N = 859)
rs2164073(T)/9:28890746 MIR873 (0.1, -0.0073, P = 1.9e-05, N = 7824) (0.2, -0.04, P = 0.5, N = 859)
rs7036584(A)/9:31022187 intergenic (0.4, -0.0038, P = 3.2e-05, N = 7824) (0.4, 0.021, P = 0.66, N = 859)
rs12377990(T)/9:32164142 intergenic (0.54, -0.0038, P = 2.5e-05, N = 7824) (0.55, -0.015, P = 0.75, N = 859)
rs7026407(T)/9:32502525 DDX58 (0.63, -0.0037, P = 4.7e-05, N = 7824) (0.66, 0.099, P = 0.047, N = 859)
rs639102(T)/9:3270045 RFX3 (0.45, 0.0038, P = 2.4e-05, N = 7824) (0.89, -0.055, P = 0.47, N = 859)
rs7850311(T)/9:38060968* SHB (0.42, -0.0039, P = 1.5e-05, N = 7824) (0.5, -0.023, P = 0.64, N = 859)
rs62536941(A)/9:38194965 snoU13 (0.17, -0.55, P = 4.8e-06, N = 1954) (0.1, -0.057, P = 0.49, N = 859)
rs945573(A)/9:71383888 PIP5K1B (0.49, 0.0037, P = 4.1e-05, N = 7824) (0.65, 0.075, P = 0.14, N = 859)
rs10869018(T)/9:74004478 TRPM3 (0.51, -0.0041, P = 5.2e-06, N = 7824) (0.21, -0.00055, P = 0.99, N = 859)
rs1333342(A)/9:77502160 TRPM6 (0.44, 0.0037, P = 4.4e-05, N = 7824) (0.13, -0.092, P = 0.22, N = 859)
rs7863838(T)/9:79425483 PRUNE2 (0.58, -0.0038, P = 2.8e-05, N = 7824) (0.63, -0.0047, P = 0.92, N = 859)
rs273472(A)/9:81876910 intergenic (0.58, -0.0039, P = 1.3e-05, N = 7824) (0.51, -0.027, P = 0.57, N = 859)
rs2164183(T)/9:83127968* intergenic (0.51, -0.004, P = 9.8e-06, N = 7824) (0.21, -0.022, P = 0.71, N = 859)
rs1246267(A)/9:86758069 intergenic (0.59, 0.0045, P = 1.1e-06, N = 7824) (0.62, -0.029, P = 0.57, N = 859)
rs700760(T)/9:88934624* ZCCHC6 (0.55, -0.0042, P = 2.6e-06, N = 7824) (0.81, -0.025, P = 0.69, N = 859)
rs11265783(T)/9:92121724 intergenic (0.36, 0.0037, P = 4.8e-05, N = 7824) (0.21, 0.015, P = 0.8, N = 859)
rs4743148(A)/9:98430574 RP11-180I4.2 (0.62, -0.0038, P = 3.2e-05, N = 7824) (0.65, -0.13, P = 0.0096, N = 859)
Results from Univariable Mendelian Randomization of L-Carnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 535 5e-04 (-0.04- 0.041) P=0.98 19 243 0 (0- 31.6) NA NA 0.0019 P=0.44
MR-Egger 535 -0.0028 (-0.045- 0.04) P=0.9 19 243 0 (0- 31.6) 498 0.86 0.0019 P=0.44
Weighted median 535 0.00069 (-0.062- 0.063) P=0.98 19 243 0 (0- 31.6) NA NA 0.0019 P=0.44
Results from Univariable MRPRESSO of L-Carnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.02 0.02 0.98
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Carnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 399 0.00085 (-0.039- 0.04) P=0.97 25 243 0 (0- 3.58) NA NA 0.00017 P=0.95
MR-Egger 399 0.00058 (-0.042- 0.043) P=0.98 25 243 0 (0- 3.58) 352 0.95 0.00017 P=0.95
Weighted median 399 0.00071 (-0.062- 0.064) P=0.98 25 243 0 (0- 3.58) NA NA 0.00017 P=0.95
Results from Univariable MRPRESSO of L-Carnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.02 0.04 0.97
beta.exposure Outlier-corrected NA NA NA NA

Choline

Instruments Associations with Choline & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Choline (Shin et al/Long et al) eGFR (CSSCD)
rs11804649(T)/1:113348570* intergenic (0.18, -0.0065, P = 4.5e-05, N = 7824) (0.081, 0.026, P = 0.76, N = 859)
rs55934782(G)/1:182577385* RGS16 (0.21, -0.19, P = 3e-06, N = 1955) (0.042, 0.026, P = 0.83, N = 859)
rs3737875(A)/1:203140671 MYBPH (0.087, -0.0093, P = 4.9e-05, N = 7824) (0.09, 0.017, P = 0.84, N = 859)
rs12562454(T)/1:26671084* AIM1L (0.2, -0.0067, P = 1.7e-05, N = 7824) (0.14, -0.09, P = 0.21, N = 859)
rs2666482(A)/1:62716806 KANK4 (0.74, -0.0063, P = 4.6e-05, N = 7824) (0.69, -0.058, P = 0.28, N = 859)
rs12039115(T)/1:62995263* DOCK7 (0.13, -0.0088, P = 1.9e-07, N = 7824) (0.11, -0.037, P = 0.62, N = 859)
rs6577322(A)/1:99164434* SNX7 (0.26, 0.0061, P = 2.9e-05, N = 7824) (0.21, 0.012, P = 0.83, N = 859)
rs6584573(C)/10:105570406* SH3PXD2A (0.016, 0.024, P = 1.3e-05, N = 7824) (0.13, -0.11, P = 0.14, N = 859)
rs17642749(T)/10:119647256* intergenic (0.95, -0.017, P = 2.7e-06, N = 7824) (0.96, -0.15, P = 0.23, N = 859)
rs2616664(A)/10:61485660 SLC16A9 (0.94, 0.011, P = 4.6e-05, N = 7824) (0.84, 0.054, P = 0.43, N = 859)
rs11253260(A)/10:625483* DIP2C (0.9, -0.0092, P = 3.6e-05, N = 7824) (0.47, 0.068, P = 0.16, N = 859)
rs9663814(A)/10:77738382* C10orf11 (0.62, 0.0069, P = 1.1e-06, N = 7824) (0.4, -0.014, P = 0.77, N = 859)
rs12253556(A)/10:93285009* intergenic (0.036, 0.51, P = 3.6e-06, N = 1955) (0.27, -0.026, P = 0.63, N = 859)
rs61878861(C)/11:337210 RP11-326C3.15 (0.32, -0.17, P = 4.9e-06, N = 1955) (0.073, 0.0069, P = 0.94, N = 859)
rs116190469(A)/11:88461300 GRM5 (0.059, 0.42, P = 5.5e-06, N = 1955) (0.033, 0.058, P = 0.67, N = 859)
rs10765693(A)/11:94403634* RP11-867G2.8 (0.12, 0.25, P = 8.1e-07, N = 1955) (0.097, -0.044, P = 0.59, N = 859)
rs11066907(A)/12:114486626* intergenic (0.19, -0.0065, P = 3.6e-05, N = 7824) (0.28, -0.02, P = 0.7, N = 859)
rs4765152(T)/12:124985150* NCOR2 (0.15, 0.0083, P = 2.3e-05, N = 7824) (0.21, -0.05, P = 0.4, N = 859)
rs11058334(A)/12:126281125 intergenic (0.023, -0.022, P = 4.3e-06, N = 7824) (0.036, -0.07, P = 0.59, N = 859)
rs7984957(C)/13:60814970* intergenic (0.78, -0.0065, P = 1.9e-05, N = 7824) (0.78, -0.026, P = 0.66, N = 859)
rs3904774(T)/13:74080133 LINC00393 (0.27, -0.0094, P = 5e-05, N = 7824) (0.56, 0.068, P = 0.15, N = 859)
rs1417497(C)/13:88128461 MIR4500HG (0.072, -0.011, P = 5.4e-06, N = 7824) (0.12, -0.026, P = 0.73, N = 859)
rs34569161(C)/13:96140764 CLDN10-AS1 (0.43, 0.13, P = 2.3e-06, N = 1955) (0.72, -0.11, P = 0.046, N = 859)
rs2297615(A)/14:20846521* TEP1 (0.78, 0.007, P = 8.2e-06, N = 7824) (0.67, -0.049, P = 0.32, N = 859)
rs1256105(T)/14:64826806 TEX21P (0.96, 0.014, P = 3e-05, N = 7824) (0.97, -0.14, P = 0.3, N = 859)
rs8003323(C)/14:70826166* COX16 (0.99, 0.031, P = 9.5e-06, N = 7824) (0.96, 0.0094, P = 0.94, N = 859)
rs11631911(A)/15:24915898 NPAP1 (0.85, 0.007, P = 2.4e-05, N = 7824) (0.84, 0.0095, P = 0.88, N = 859)
rs1906159(T)/15:40019682* FSIP1 (0.13, -0.0069, P = 3.5e-05, N = 7824) (0.38, -0.055, P = 0.28, N = 859)
rs8033100(T)/15:71977446* THSD4 (0.86, -0.0083, P = 4.9e-07, N = 7824) (0.66, -0.016, P = 0.75, N = 859)
rs4784175(A)/16:62213038 intergenic (0.86, -0.0091, P = 8.6e-06, N = 7824) (0.98, -0.13, P = 0.44, N = 859)
rs4888896(A)/16:79006490* WWOX (0.5, 0.0084, P = 2.8e-05, N = 7824) (0.34, -0.019, P = 0.71, N = 859)
rs11656215(T)/17:17453067* PEMT (0.5, -0.0079, P = 7.5e-08, N = 7824) (0.32, -0.095, P = 0.076, N = 859)
rs11867208(T)/17:17504609* RP11-524F11.2 (0.39, 0.0062, P = 1.4e-05, N = 7824) (0.4, 0.11, P = 0.025, N = 859)
rs7215931(A)/17:30099125 RP11-805L22.3 (0.2, 0.0079, P = 1.3e-06, N = 7824) (0.15, 0.032, P = 0.64, N = 859)
rs2053158(A)/17:73393459* GRB2 (0.83, 0.0066, P = 4.3e-05, N = 7824) (0.22, -0.019, P = 0.75, N = 859)
rs4789359(T)/17:74820027 intergenic (0.76, 0.0065, P = 2.1e-05, N = 7824) (0.85, 0.046, P = 0.49, N = 859)
rs3786284(A)/18:12010646* IMPA2 (0.15, 0.0077, P = 2e-06, N = 7824) (0.12, 0.1, P = 0.16, N = 859)
rs11663451(T)/18:2636605* intergenic (0.19, 0.25, P = 2.1e-06, N = 1955) (0.47, 0.0016, P = 0.97, N = 859)
rs1600674(A)/18:49450206 intergenic (0.83, 0.18, P = 1.5e-06, N = 1955) (0.59, -0.08, P = 0.11, N = 859)
rs7231686(C)/18:56737737* OACYLP (0.44, -0.2, P = 9.4e-07, N = 1955) (0.42, 0.0099, P = 0.84, N = 859)
rs12964226(T)/18:70957863* intergenic (0.21, -0.18, P = 5.7e-06, N = 1955) (0.24, 0.08, P = 0.16, N = 859)
rs2032334(A)/18:71191392 intergenic (0.79, -0.0068, P = 1.2e-05, N = 7824) (0.71, 0.063, P = 0.24, N = 859)
rs6506578(A)/18:8375039 PTPRM (0.017, -0.039, P = 3.9e-05, N = 7824) (0.064, 0.12, P = 0.22, N = 859)
rs2158004(A)/19:19033089 DDX49 (0.14, -0.0077, P = 1.3e-05, N = 7824) (0.42, 0.079, P = 0.11, N = 859)
rs321941(A)/19:52860348* ZNF610 (0.16, -0.011, P = 4e-05, N = 7824) (0.48, -0.0038, P = 0.94, N = 859)
rs7573335(T)/2:11127705* intergenic (0.89, -0.0088, P = 4.8e-05, N = 7824) (0.76, -0.011, P = 0.85, N = 859)
rs4538138(T)/2:147285915 intergenic (0.19, 0.0071, P = 6.1e-06, N = 7824) (0.45, 0.02, P = 0.69, N = 859)
rs34658429(C)/2:16597553 AC010880.1 (0.68, -0.14, P = 1.6e-06, N = 1955) (0.24, -0.057, P = 0.32, N = 859)
rs715(T)/2:211543055* CPS1 (0.71, 0.008, P = 9.1e-08, N = 7824) (0.81, -0.061, P = 0.33, N = 859)
rs16865057(A)/2:224529849* intergenic (0.97, -0.015, P = 3.8e-05, N = 7824) (0.63, -0.13, P = 0.0065, N = 859)
rs10194073(A)/2:38117987* intergenic (0.79, -0.007, P = 6.3e-06, N = 7824) (0.68, 0.075, P = 0.15, N = 859)
rs12105001(A)/2:44382375* RNU6-566P (0.049, -0.013, P = 7.5e-06, N = 7824) (0.029, -0.22, P = 0.11, N = 859)
rs4293599(C)/2:48944744 LHCGR (0.18, 0.0071, P = 5.9e-06, N = 7824) (0.11, -0.006, P = 0.94, N = 859)
rs7574038(C)/2:5276851 intergenic (0.077, 0.33, P = 5.3e-06, N = 1955) (0.2, 0.13, P = 0.037, N = 859)
rs6716379(C)/2:6896086 LINC00487 (0.15, 0.22, P = 4.7e-06, N = 1955) (0.16, 0.013, P = 0.84, N = 859)
rs6546697(T)/2:71707208 DYSF (0.16, 0.0074, P = 1.3e-05, N = 7824) (0.27, 0.075, P = 0.18, N = 859)
rs3856464(A)/2:9825974 RP11-521D12.2 (0.34, 0.18, P = 8e-06, N = 1955) (0.3, 0.032, P = 0.54, N = 859)
rs6035707(A)/20:20822149* intergenic (0.91, 0.0097, P = 1.1e-05, N = 7824) (0.84, 0.034, P = 0.6, N = 859)
rs2072241(A)/20:52561372 BCAS1 (0.78, 0.0067, P = 1.4e-05, N = 7824) (0.85, -0.0091, P = 0.89, N = 859)
rs2824226(A)/21:18457828 intergenic (0.82, 0.0074, P = 3.2e-06, N = 7824) (0.81, 0.011, P = 0.85, N = 859)
rs2833296(A)/21:32509845 TIAM1 (0.85, -0.0071, P = 1.1e-05, N = 7824) (0.5, -0.023, P = 0.63, N = 859)
rs2268241(A)/21:34781050 IFNGR2 (0.14, -0.007, P = 3.3e-05, N = 7824) (0.35, 0.079, P = 0.11, N = 859)
rs2293370(A)/3:119219934* TIMMDC1 (0.19, 0.0064, P = 4.2e-05, N = 7824) (0.2, 0.014, P = 0.81, N = 859)
rs2049502(A)/3:119254385* CD80 (0.83, -0.0065, P = 4.1e-05, N = 7824) (0.88, -0.016, P = 0.82, N = 859)
rs7645964(A)/3:168709924 intergenic (0.01, -0.79, P = 3.5e-06, N = 1955) (0.12, 0.25, P = 0.00044, N = 859)
rs12485568(G)/3:26669772 LRRC3B (0.54, 0.14, P = 9.1e-06, N = 1955) (0.38, -0.023, P = 0.64, N = 859)
rs555638682(CGGCCG)/3:47517573 SCAP (0.013, -0.64, P = 8.2e-06, N = 1955) (0.019, -0.12, P = 0.5, N = 859)
rs71308083(A)/3:55170650 intergenic (0.053, -0.42, P = 1.2e-06, N = 1955) (0.016, 0.14, P = 0.45, N = 859)
rs1403072(T)/3:70373502* intergenic (0.77, 0.17, P = 8.5e-06, N = 1955) (0.66, -0.023, P = 0.65, N = 859)
rs11930490(A)/4:131803692* RP11-401I19.1 (0.8, -0.0076, P = 1.5e-06, N = 7824) (0.79, -0.062, P = 0.29, N = 859)
rs2867675(A)/4:14214505 RP11-669M16.1 (0.044, -0.39, P = 9.1e-06, N = 1955) (0.012, 0.032, P = 0.88, N = 859)
rs7687295(A)/4:182067936 LINC00290 (0.025, 0.021, P = 4.3e-06, N = 7824) (0.21, -0.082, P = 0.16, N = 859)
rs16885645(A)/4:31678993 intergenic (0.055, 0.011, P = 4.7e-05, N = 7824) (0.14, -0.032, P = 0.64, N = 859)
rs9761879(A)/4:43860178 intergenic (0.77, 0.23, P = 6.3e-06, N = 1955) (0.55, 0.067, P = 0.17, N = 859)
rs12509841(T)/4:46578339 intergenic (0.15, -0.0067, P = 3.1e-05, N = 7824) (0.15, 0.0058, P = 0.93, N = 859)
rs959160(C)/4:47288955* GABRB1 (0.8, -0.0069, P = 1.1e-05, N = 7824) (0.97, 0.026, P = 0.87, N = 859)
rs2136209(A)/5:115384247* ARL14EPL (0.85, -0.0068, P = 2.2e-05, N = 7824) (0.77, -0.04, P = 0.48, N = 859)
rs17140120(A)/5:115892364 SEMA6A (0.16, 0.007, P = 1.1e-05, N = 7824) (0.04, 0.1, P = 0.39, N = 859)
rs3798102(T)/5:132605601 FSTL4 (0.97, -0.025, P = 3.8e-05, N = 7824) (0.38, 0.076, P = 0.12, N = 859)
rs4487482(A)/5:135201771* SLC25A48 (0.8, 0.0081, P = 1.8e-07, N = 7824) (0.9, 0.0042, P = 0.96, N = 859)
rs1573824(A)/5:170269857 intergenic (0.17, -0.0067, P = 2.4e-05, N = 7824) (0.3, 0.025, P = 0.63, N = 859)
rs224947(C)/5:81712715 intergenic (0.28, -0.0059, P = 4.8e-05, N = 7824) (0.25, 0.054, P = 0.34, N = 859)
rs111326958(T)/6:105755606 PREP (0.051, -0.36, P = 5.9e-06, N = 1955) (0.059, 0.033, P = 0.75, N = 859)
rs983669(T)/6:127122998* intergenic (0.55, 0.0063, P = 1.8e-05, N = 7824) (0.64, -0.008, P = 0.87, N = 859)
rs9321388(A)/6:133384863* intergenic (0.18, -0.0072, P = 7.6e-06, N = 7824) (0.74, 0.045, P = 0.4, N = 859)
rs17788268(T)/6:169477819 intergenic (0.2, 0.0066, P = 2.1e-05, N = 7824) (0.042, -0.059, P = 0.63, N = 859)
rs303000(A)/6:25057499 RP3-425P12.1 (0.17, 0.0069, P = 1.3e-05, N = 7824) (0.081, 0.096, P = 0.29, N = 859)
rs7745768(T)/6:29314964* intergenic (0.14, -0.0069, P = 3.3e-05, N = 7824) (0.16, 0.027, P = 0.68, N = 859)
rs2485074(A)/6:75350666 RP11-554D15.1 (0.094, 0.0096, P = 1.3e-05, N = 7824) (0.019, 0.03, P = 0.87, N = 859)
rs2299554(T)/7:126857154* GRM8 (0.96, 0.015, P = 3.6e-05, N = 7824) (0.91, 0.018, P = 0.83, N = 859)
rs2080224(A)/7:19528604* AC007091.1 (0.93, -0.011, P = 2e-06, N = 7824) (0.68, 0.012, P = 0.81, N = 859)
rs156282(G)/7:24200098* intergenic (0.37, 0.2, P = 1.8e-06, N = 1955) (0.67, -0.047, P = 0.36, N = 859)
rs2254363(A)/7:36122030* PP13004 (0.14, 0.0076, P = 1.1e-05, N = 7824) (0.41, 0.032, P = 0.5, N = 859)
rs2371208(T)/7:82337859* intergenic (0.22, -0.0062, P = 3.9e-05, N = 7824) (0.49, -0.001, P = 0.98, N = 859)
rs4262299(A)/8:108342263 ANGPT1 (0.87, 0.0072, P = 1.5e-05, N = 7824) (0.93, -0.04, P = 0.66, N = 859)
rs9694615(T)/8:21219361* intergenic (0.72, 0.0063, P = 3e-05, N = 7824) (0.95, -0.067, P = 0.56, N = 859)
rs4242454(A)/8:50672477* intergenic (0.14, 0.0077, P = 3.2e-06, N = 7824) (0.23, 0.14, P = 0.013, N = 859)
rs11791084(A)/9:138245834 RP11-555H7.2 (0.17, -0.0068, P = 3e-05, N = 7824) (0.15, 0.046, P = 0.49, N = 859)
rs7860932(A)/9:16786898* BNC2 (0.92, -0.0098, P = 1.5e-05, N = 7824) (0.85, -0.00075, P = 0.99, N = 859)
rs10963078(T)/9:17394225 CNTLN (0.3, 0.009, P = 2.7e-05, N = 7824) (0.16, 0.0074, P = 0.91, N = 859)
rs2891282(C)/9:26227745* intergenic (0.85, -0.0067, P = 2.8e-05, N = 7824) (0.74, -0.04, P = 0.46, N = 859)
rs12551252(T)/9:98438329 RP11-180I4.2 (0.075, -0.01, P = 1.5e-05, N = 7824) (0.035, 0.064, P = 0.63, N = 859)
Results from Univariable Mendelian Randomization of Choline & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 102 -0.096 (-0.19- -0.0058) P=0.037 6.3 32 8.36 (0- 48.8) NA NA 0.0053 P=0.45
MR-Egger 102 -0.11 (-0.22- -0.011) P=0.032 6.3 32 8.36 (0- 48.8) 98 0.55 0.0053 P=0.45
Weighted median 102 -0.053 (-0.22- 0.12) P=0.54 6.3 32 8.36 (0- 48.8) NA NA 0.0053 P=0.45
Results from Univariable MRPRESSO of Choline & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.1 0.05 -2.09 0.04
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Choline & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 50 -0.1 (-0.23- 0.016) P=0.088 7.8 20 17.8 (0- 39.8) NA NA -0.0077 P=0.49
MR-Egger 50 -0.08 (-0.22- 0.059) P=0.26 7.8 20 17.8 (0- 39.8) 50 0.38 -0.0077 P=0.49
Weighted median 50 -0.085 (-0.32- 0.15) P=0.47 7.8 20 17.8 (0- 39.8) NA NA -0.0077 P=0.49
Results from Univariable MRPRESSO of Choline & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.1 0.06 -1.71 0.09
beta.exposure Outlier-corrected NA NA NA NA

Citric acid

Instruments Associations with Citric acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Citric acid (Shin et al/Long et al) eGFR (CSSCD)
rs2392041(A)/1:100056225 intergenic (0.66, -0.0075, P = 3.5e-05, N = 7824) (0.46, -0.013, P = 0.79, N = 859)
rs3125672(T)/1:107822255* NTNG1 (0.3, -0.0076, P = 2.7e-05, N = 7824) (0.1, -0.11, P = 0.15, N = 859)
rs6604130(A)/1:109388656* AKNAD1 (0.19, 0.15, P = 3.9e-06, N = 1958) (0.52, -0.014, P = 0.76, N = 859)
rs17037696(T)/1:12243274 TNFRSF1B (0.26, -0.011, P = 1.2e-05, N = 7824) (0.19, 0.062, P = 0.31, N = 859)
rs12136772(A)/1:19901804 intergenic (0.92, -0.014, P = 4e-05, N = 7824) (0.93, -0.13, P = 0.18, N = 859)
rs6678076(A)/1:199233200* RP11-382E9.1 (0.034, -0.025, P = 1.1e-06, N = 7824) (0.24, -0.0069, P = 0.91, N = 859)
rs6655965(A)/1:203680492* ATP2B4 (0.54, 0.0074, P = 3.6e-05, N = 7824) (0.35, 0.0073, P = 0.88, N = 859)
rs11120725(A)/1:216206768 USH2A (0.46, -0.018, P = 4.6e-06, N = 7824) (0.34, 0.025, P = 0.63, N = 859)
rs265126(A)/1:217620203* GPATCH2 (0.17, 0.011, P = 2.6e-05, N = 7824) (0.35, 0.081, P = 0.11, N = 859)
rs2813960(T)/1:227402299 CDC42BPA (0.67, -0.018, P = 2.5e-05, N = 7824) (0.64, 0.016, P = 0.76, N = 859)
rs11584333(A)/1:230529619* PGBD5 (0.32, -0.15, P = 5e-06, N = 1958) (0.09, 0.081, P = 0.34, N = 859)
rs614612(T)/1:23422692* LUZP1 (0.16, -0.022, P = 1.7e-05, N = 7824) (0.19, 0.12, P = 0.051, N = 859)
rs12748947(T)/1:239463528 intergenic (0.68, -0.0074, P = 4.7e-05, N = 7824) (0.92, 0.068, P = 0.44, N = 859)
rs260969(T)/1:39551621 MACF1 (0.28, -0.0074, P = 4.8e-05, N = 7824) (0.14, 0.068, P = 0.34, N = 859)
rs7512821(A)/1:62774469* KANK4 (0.46, -0.0074, P = 3.2e-05, N = 7824) (0.69, -0.061, P = 0.25, N = 859)
rs11492774(C)/10:109637548 RP11-215N21.1 (0.15, -0.24, P = 6.8e-06, N = 1958) (0.14, 0.025, P = 0.73, N = 859)
rs10787308(A)/10:112908968* intergenic (0.27, -0.009, P = 6e-07, N = 7824) (0.26, 0.016, P = 0.77, N = 859)
rs4880317(A)/10:133880163 intergenic (0.32, -0.0074, P = 4.6e-05, N = 7824) (0.13, -0.015, P = 0.83, N = 859)
rs3750870(T)/10:24548718* KIAA1217 (0.36, 0.0077, P = 1.9e-05, N = 7824) (0.14, 0.1, P = 0.14, N = 859)
rs4589188(A)/10:5567914 CALML3 (0.28, 0.012, P = 3.3e-06, N = 7824) (0.29, 0.0042, P = 0.94, N = 859)
rs7919076(T)/10:68328936 CTNNA3 (0.34, -0.0081, P = 7.8e-06, N = 7824) (0.22, 0.051, P = 0.38, N = 859)
rs2057440(A)/10:77758013 C10orf11 (0.72, 0.0079, P = 1.3e-05, N = 7824) (0.39, -0.053, P = 0.27, N = 859)
rs10824358(T)/10:77827397 C10orf11 (0.55, -0.0072, P = 4.8e-05, N = 7824) (0.75, -0.088, P = 0.11, N = 859)
rs4918082(A)/10:95859929* PLCE1 (0.72, -0.0079, P = 1.3e-05, N = 7824) (0.46, 0.036, P = 0.46, N = 859)
rs3193970(T)/10:97072008* SORBS1 (0.58, 0.0081, P = 6.1e-06, N = 7824) (0.63, 0.051, P = 0.31, N = 859)
rs1998911(T)/10:97266538* SORBS1 (0.29, 0.0075, P = 4.4e-05, N = 7824) (0.58, -0.0063, P = 0.9, N = 859)
rs527936(C)/11:100279586 intergenic (0.88, 0.011, P = 4.5e-05, N = 7824) (0.79, -0.057, P = 0.32, N = 859)
rs7105815(A)/11:12309693 MICALCL (0.3, 0.0091, P = 4.9e-07, N = 7824) (0.38, 0.00062, P = 0.99, N = 859)
rs7950818(T)/11:124385456* OR8B10P (0.12, -0.011, P = 2.1e-05, N = 7824) (0.19, -0.045, P = 0.47, N = 859)
rs2878806(T)/11:17713507* RP11-358H18.3 (0.75, -0.0078, P = 2e-05, N = 7824) (0.17, 0.15, P = 0.02, N = 859)
rs7109624(A)/11:20836004 NELL1 (0.018, -0.031, P = 4.5e-05, N = 7824) (0.036, 0.043, P = 0.74, N = 859)
rs2237897(T)/11:2858546 KCNQ1 (0.058, -0.038, P = 1e-05, N = 7824) (0.086, -0.074, P = 0.39, N = 859)
rs13966(T)/11:61664992* RAB3IL1 (0.47, 0.0082, P = 1e-05, N = 7824) (0.54, 0.079, P = 0.11, N = 859)
rs12797573(T)/11:77255306* CLNS1A (0.69, -0.0076, P = 2.6e-05, N = 7824) (0.87, -0.053, P = 0.45, N = 859)
rs12222578(T)/11:81696265 RP11-179A16.1 (0.29, -0.0073, P = 4.6e-05, N = 7824) (0.11, 0.082, P = 0.29, N = 859)
rs12803308(A)/11:96180609* JRKL-AS1 (0.68, -0.0081, P = 6e-06, N = 7824) (0.82, 0.023, P = 0.71, N = 859)
rs1169072(A)/12:122401501* WDR66 (0.42, 0.0078, P = 1.2e-05, N = 7824) (0.16, 0.011, P = 0.87, N = 859)
rs79424089(G)/12:21485527 SLCO1A2 (0.061, 0.23, P = 2.5e-06, N = 1958) (0.013, -0.11, P = 0.61, N = 859)
rs2080125(T)/12:7727544* intergenic (0.27, 0.0074, P = 4.8e-05, N = 7824) (0.8, 0.079, P = 0.18, N = 859)
rs932829(A)/13:40828542 intergenic (0.47, -0.0078, P = 1.3e-05, N = 7824) (0.41, -0.21, P = 2.9e-05, N = 859)
rs35354791(TG)/13:46419404 SIAH3 (0.45, 0.18, P = 8.7e-06, N = 1958) (0.82, -0.0025, P = 0.97, N = 859)
rs1953192(T)/14:40297539* intergenic (0.42, 0.0077, P = 1.3e-05, N = 7824) (0.1, 0.0087, P = 0.91, N = 859)
rs2236299(A)/14:55255335 SAMD4A (0.31, 0.0087, P = 1.7e-06, N = 7824) (0.14, 0.051, P = 0.46, N = 859)
rs8017368(A)/14:63527183* KCNH5 (0.65, -0.0083, P = 3.9e-06, N = 7824) (0.52, 0.062, P = 0.2, N = 859)
rs10147304(A)/14:79079176 NRXN3 (0.052, 0.018, P = 1.6e-05, N = 7824) (0.2, -0.011, P = 0.85, N = 859)
rs74686496(C)/14:98384933 intergenic (0.12, 0.26, P = 9.5e-06, N = 1958) (0.012, -0.17, P = 0.41, N = 859)
rs8025575(C)/15:26788083* GABRB3 (0.46, -0.0073, P = 4.6e-05, N = 7824) (0.59, -0.03, P = 0.54, N = 859)
rs4779800(A)/15:29411326* APBA2 (0.88, -0.012, P = 6.1e-06, N = 7824) (0.54, -0.021, P = 0.66, N = 859)
rs8025554(C)/15:32418417 CHRNA7 (0.52, -0.008, P = 6.6e-06, N = 7824) (0.34, -0.091, P = 0.076, N = 859)
rs1530219(A)/15:39602380* RP11-462P6.1 (0.48, -0.0078, P = 9.9e-06, N = 7824) (0.16, -0.038, P = 0.56, N = 859)
rs3784283(A)/15:41867782 TYRO3 (0.61, 0.0076, P = 2.1e-05, N = 7824) (0.5, -0.0078, P = 0.87, N = 859)
rs7179219(A)/15:42324479 PLA2G4E (0.15, -0.011, P = 2.3e-05, N = 7824) (0.26, 0.077, P = 0.15, N = 859)
rs2727091(T)/15:66124227* RAB11A (0.12, -0.012, P = 1.4e-05, N = 7824) (0.12, 0.024, P = 0.75, N = 859)
rs11862304(A)/16:17191196 XYLT1 (0.28, 0.0077, P = 2e-05, N = 7824) (0.42, 0.084, P = 0.083, N = 859)
rs2239337(C)/16:22911553 HS3ST2 (0.036, 0.023, P = 7.5e-06, N = 7824) (0.29, 0.02, P = 0.7, N = 859)
rs6502405(A)/17:14834158 intergenic (0.39, -0.0076, P = 2.3e-05, N = 7824) (0.14, -0.045, P = 0.51, N = 859)
rs170149(A)/17:6595930 SLC13A5 (0.074, 0.026, P = 1.4e-13, N = 7824) (0.25, -0.048, P = 0.37, N = 859)
rs218682(T)/17:6614288 SLC13A5 (0.4, 0.0093, P = 3e-07, N = 7824) (0.78, -0.083, P = 0.16, N = 859)
rs4999864(C)/17:66786460 RP11-118B18.2 (0.93, 0.018, P = 4.8e-07, N = 7824) (0.79, 0.026, P = 0.66, N = 859)
rs1509123(T)/17:6683878 FBXO39 (0.048, -0.025, P = 5.2e-09, N = 7824) (0.04, 0.038, P = 0.76, N = 859)
rs12103645(T)/17:6721216* TEKT1 (0.086, -0.018, P = 6.6e-08, N = 7824) (0.18, -0.04, P = 0.51, N = 859)
rs9901983(A)/17:71816764* LINC00469 (0.021, 0.062, P = 4.9e-05, N = 7824) (0.42, 0.0065, P = 0.89, N = 859)
rs6507399(A)/18:38732045 intergenic (0.67, -0.01, P = 1.7e-08, N = 7824) (0.79, -0.025, P = 0.67, N = 859)
rs2552494(A)/18:38751633* intergenic (0.19, 0.011, P = 3.4e-05, N = 7824) (0.41, -0.0041, P = 0.94, N = 859)
rs1792712(A)/18:53834119 CTD-2008L17.2 (0.41, 0.0075, P = 2.7e-05, N = 7824) (0.71, 0.019, P = 0.71, N = 859)
rs17208063(T)/18:67557428 CD226 (0.076, 0.2, P = 9.1e-06, N = 1958) (0.074, 0.044, P = 0.62, N = 859)
rs36013690(CA)/18:74632507 ZNF236 (0.079, -0.23, P = 9.1e-06, N = 1958) (0.8, -0.055, P = 0.36, N = 859)
rs889128(T)/19:10131693 RDH8 (0.67, 0.0082, P = 6.8e-06, N = 7824) (0.39, -0.048, P = 0.33, N = 859)
rs279220(A)/19:11990258 ZNF439 (0.33, 0.18, P = 9.4e-06, N = 1958) (0.44, -0.017, P = 0.72, N = 859)
rs588973(A)/19:50736956* MYH14 (0.65, 0.009, P = 6.8e-06, N = 7824) (0.58, 0.11, P = 0.024, N = 859)
rs2370136(T)/19:57619241* intergenic (0.49, -0.0086, P = 1.2e-06, N = 7824) (0.73, 0.0081, P = 0.88, N = 859)
rs6725836(T)/2:107862691* intergenic (0.7, -0.0077, P = 2e-05, N = 7824) (0.34, -0.00076, P = 0.99, N = 859)
rs11693199(T)/2:119732042 MARCO (0.59, -0.0079, P = 1e-05, N = 7824) (0.92, 0.034, P = 0.7, N = 859)
rs3749114(A)/2:160832996* PLA2R1 (0.46, 0.0078, P = 1.3e-05, N = 7824) (0.9, -0.026, P = 0.74, N = 859)
rs17614686(C)/2:167808253* XIRP2 (0.88, 0.012, P = 1.4e-05, N = 7824) (0.95, 0.12, P = 0.29, N = 859)
rs6747034(A)/2:174238868 intergenic (0.48, -0.0074, P = 3e-05, N = 7824) (0.76, -0.039, P = 0.48, N = 859)
rs4470337(A)/2:228293381 intergenic (0.42, -0.0074, P = 3.6e-05, N = 7824) (0.48, -0.0017, P = 0.97, N = 859)
rs76848421(T)/2:240661614 RP11-315F22.1 (0.017, 0.66, P = 4.3e-06, N = 1958) (0.13, 0.078, P = 0.28, N = 859)
rs4274563(T)/2:30157386 intergenic (0.38, -0.0075, P = 3.3e-05, N = 7824) (0.54, 0.021, P = 0.66, N = 859)
rs7584253(A)/2:48927246* LHCGR (0.7, 0.0083, P = 5e-06, N = 7824) (0.74, 0.062, P = 0.26, N = 859)
rs193031(C)/2:64260458 intergenic (0.18, 0.011, P = 1.2e-05, N = 7824) (0.43, -0.069, P = 0.16, N = 859)
rs939136(C)/2:66677531 MEIS1 (0.67, -0.0076, P = 2.3e-05, N = 7824) (0.48, 0.054, P = 0.26, N = 859)
rs6077792(T)/20:1096116 PSMF1 (0.3, -0.0085, P = 2.8e-06, N = 7824) (0.26, -0.0064, P = 0.91, N = 859)
rs6121327(A)/20:30643515 HCK (0.012, 0.68, P = 4e-06, N = 1958) (0.059, 0.065, P = 0.52, N = 859)
rs1325760(T)/20:46740070 intergenic (0.74, 0.0077, P = 1.8e-05, N = 7824) (0.22, 0.074, P = 0.21, N = 859)
rs12625828(T)/20:48844585 intergenic (0.34, 0.0086, P = 2.1e-06, N = 7824) (0.18, 0.096, P = 0.13, N = 859)
rs11905229(C)/20:55151100 RP5-843L14.1 (0.43, 0.013, P = 5.8e-06, N = 7824) (0.28, 0.032, P = 0.55, N = 859)
rs6133537(A)/20:8039501 intergenic (0.061, 0.018, P = 1.8e-05, N = 7824) (0.093, -0.051, P = 0.55, N = 859)
rs2836710(T)/21:40218782 AP001042.1 (0.63, 0.0077, P = 1.7e-05, N = 7824) (0.75, 0.0025, P = 0.96, N = 859)
rs1125471(A)/22:17656724 CECR1 (0.29, -0.0085, P = 4.5e-06, N = 7824) (0.19, -0.074, P = 0.22, N = 859)
rs807670(A)/22:19154608* AC004463.6 (0.42, 0.011, P = 6.8e-10, N = 7824) (0.44, -0.033, P = 0.49, N = 859)
rs723414(A)/22:19185736* CLTCL1 (0.56, -0.0072, P = 4.6e-05, N = 7824) (0.79, 0.042, P = 0.48, N = 859)
rs361787(T)/22:19263698* CLTCL1 (0.61, -0.0091, P = 3.8e-07, N = 7824) (0.75, 0.0011, P = 0.98, N = 859)
rs738809(A)/22:24405492* CABIN1 (0.72, 0.0077, P = 2.1e-05, N = 7824) (0.7, -0.068, P = 0.21, N = 859)
rs9624921(T)/22:26250248* MYO18B (0.3, 0.0074, P = 4.5e-05, N = 7824) (0.14, 0.037, P = 0.6, N = 859)
rs2413380(T)/22:36519040* intergenic (0.6, -0.0076, P = 2.1e-05, N = 7824) (0.86, -0.035, P = 0.6, N = 859)
rs133064(A)/22:41071731 MCHR1 (0.38, -0.0073, P = 4.6e-05, N = 7824) (0.33, 0.041, P = 0.42, N = 859)
rs11706160(G)/3:1461452 intergenic (0.27, 0.2, P = 6.5e-06, N = 1958) (0.061, -0.0047, P = 0.96, N = 859)
rs11276214(TTTACTACAATTTAC)/3:183088540 MCF2L2 (0.062, -0.24, P = 2.1e-06, N = 1958) (0.55, -0.023, P = 0.62, N = 859)
rs7623540(A)/3:188489540 LPP (0.72, -0.0085, P = 3.4e-06, N = 7824) (0.45, -0.019, P = 0.69, N = 859)
rs10514735(A)/3:85798950* CADM2 (0.98, 0.035, P = 6.5e-06, N = 7824) (0.97, 0.23, P = 0.092, N = 859)
rs17034684(T)/4:105511810 AC004053.1 (0.29, 0.0081, P = 7.9e-06, N = 7824) (0.26, -0.038, P = 0.49, N = 859)
rs697365(A)/4:121377644 intergenic (0.34, -0.0075, P = 3e-05, N = 7824) (0.12, 0.032, P = 0.67, N = 859)
rs12499121(T)/4:12297535* intergenic (0.79, 0.011, P = 1.5e-05, N = 7824) (0.73, -0.049, P = 0.36, N = 859)
rs13151462(A)/4:12670968* intergenic (0.58, 0.0081, P = 5.1e-06, N = 7824) (0.39, -0.0099, P = 0.84, N = 859)
rs1033175(A)/4:128532930* intergenic (0.57, 0.0076, P = 2.1e-05, N = 7824) (0.43, -0.00028, P = 1, N = 859)
rs28446988(T)/4:140140965* intergenic (0.24, 0.12, P = 7.9e-06, N = 1958) (0.5, -0.031, P = 0.51, N = 859)
rs13130021(T)/4:2277763* ZFYVE28 (0.43, -0.0089, P = 1.4e-06, N = 7824) (0.18, 0.1, P = 0.1, N = 859)
rs13128174(C)/4:37739459 intergenic (0.16, -0.21, P = 9.9e-06, N = 1958) (0.065, 0.053, P = 0.59, N = 859)
rs4861079(A)/4:40371287 intergenic (0.86, -0.011, P = 1.7e-05, N = 7824) (0.43, 0.011, P = 0.81, N = 859)
rs1404373(T)/4:58204024 intergenic (0.65, -0.0084, P = 2.9e-06, N = 7824) (0.95, 0.12, P = 0.28, N = 859)
rs6854172(T)/4:6410288* PPP2R2C (0.16, 0.022, P = 2.1e-05, N = 7824) (0.21, 0.027, P = 0.65, N = 859)
rs4235093(A)/4:72346252 SLC4A4 (0.29, -0.0083, P = 5e-06, N = 7824) (0.78, 0.039, P = 0.49, N = 859)
rs13106792(A)/4:80239092 NAA11 (0.63, 0.0078, P = 1.4e-05, N = 7824) (0.68, -0.056, P = 0.28, N = 859)
rs4693453(A)/4:83448507* TMEM150C (0.87, 0.011, P = 2.7e-05, N = 7824) (0.45, 0.012, P = 0.8, N = 859)
rs12509601(A)/4:92222755 CCSER1 (0.71, -0.15, P = 3.7e-06, N = 1958) (0.96, -0.1, P = 0.39, N = 859)
rs1230171(C)/4:99924278* METAP1 (0.68, -0.0076, P = 2.8e-05, N = 7824) (0.85, -0.046, P = 0.5, N = 859)
rs17595102(C)/4:99986316* METAP1 (0.44, -0.0078, P = 1.3e-05, N = 7824) (0.12, 0.032, P = 0.67, N = 859)
rs1549924(A)/5:107216209* FBXL17 (0.079, -0.015, P = 2e-05, N = 7824) (0.17, 0.044, P = 0.48, N = 859)
rs9327706(A)/5:134512608* C5orf66 (0.59, 0.0081, P = 5.6e-06, N = 7824) (0.55, 0.045, P = 0.35, N = 859)
rs111686785(G)/5:14738965 ANKH (0.03, -0.61, P = 1.1e-07, N = 1958) (0.019, 0.077, P = 0.66, N = 859)
rs835154(A)/5:14876569* ANKH (0.58, -0.011, P = 1.1e-10, N = 7824) (0.88, 0.092, P = 0.22, N = 859)
rs1968433(T)/5:155628282 SGCD (0.66, 0.0076, P = 2.2e-05, N = 7824) (0.93, -0.11, P = 0.27, N = 859)
rs10043015(T)/5:168658371 SLIT3 (0.71, 0.0082, P = 5.6e-06, N = 7824) (0.61, -0.13, P = 0.011, N = 859)
rs9313504(A)/5:169830698* CTD-2270F17.1 (0.99, -0.074, P = 3.4e-05, N = 7824) (0.8, 0.072, P = 0.23, N = 859)
rs2731709(T)/5:171788634* SH3PXD2B (0.67, -0.0078, P = 1.6e-05, N = 7824) (0.85, -0.065, P = 0.33, N = 859)
rs12654113(C)/5:20326490 CDH18 (0.47, -0.0077, P = 1.7e-05, N = 7824) (0.83, -0.042, P = 0.51, N = 859)
rs7710027(T)/5:55901945* AC022431.2 (0.29, 0.0081, P = 9.2e-06, N = 7824) (0.65, 0.075, P = 0.13, N = 859)
rs2534835(T)/5:56948443 intergenic (0.24, -0.0083, P = 6.2e-06, N = 7824) (0.081, 0.018, P = 0.83, N = 859)
rs113693608(TAA)/5:7660900 ADCY2 (0.18, 0.23, P = 9.9e-06, N = 1958) (0.2, 0.027, P = 0.66, N = 859)
rs10074809(T)/5:95818902 CTD-2337A12.1 (0.29, 0.0079, P = 1.3e-05, N = 7824) (0.047, 0.06, P = 0.6, N = 859)
rs7734922(T)/5:96745629 RP11-155G15.2 (0.92, 0.029, P = 3.2e-05, N = 7824) (0.79, 0.083, P = 0.16, N = 859)
rs9387010(T)/6:111705944* REV3L (0.065, -0.015, P = 2.9e-05, N = 7824) (0.053, 0.037, P = 0.73, N = 859)
rs9372398(T)/6:114833591 intergenic (0.55, 0.0081, P = 6.7e-06, N = 7824) (0.26, -0.058, P = 0.27, N = 859)
rs768581(T)/6:117277972 intergenic (0.19, -0.011, P = 2.7e-05, N = 7824) (0.26, 0.11, P = 0.046, N = 859)
rs2224382(A)/6:133611341 EYA4 (0.4, -0.01, P = 4.4e-05, N = 7824) (0.43, 0.051, P = 0.3, N = 859)
rs9389071(A)/6:133674634* EYA4 (0.16, -0.012, P = 5.6e-06, N = 7824) (0.23, 0.056, P = 0.32, N = 859)
rs3777804(A)/6:133708746* EYA4 (0.87, 0.011, P = 2.2e-05, N = 7824) (0.71, 0.015, P = 0.78, N = 859)
rs2143327(T)/6:146616239 GRM1 (0.013, 0.039, P = 4.3e-06, N = 7824) (0.28, -0.0049, P = 0.93, N = 859)
rs2294784(T)/6:148852391* SASH1 (0.86, -0.011, P = 4.9e-05, N = 7824) (0.76, 0.01, P = 0.85, N = 859)
rs2880072(A)/6:159825449* intergenic (0.39, 0.0072, P = 5e-05, N = 7824) (0.69, -0.064, P = 0.23, N = 859)
rs9355391(G)/6:162689005 PARK2 (0.18, -0.2, P = 4.2e-06, N = 1958) (0.62, -0.057, P = 0.24, N = 859)
rs12213498(T)/6:169753177 intergenic (0.14, 0.26, P = 8.4e-06, N = 1958) (0.016, 0.24, P = 0.21, N = 859)
rs910616(T)/6:44074976 intergenic (0.5, -0.0093, P = 2e-07, N = 7824) (0.18, -0.025, P = 0.69, N = 859)
rs4236146(T)/6:56960612 ZNF451 (0.19, 0.012, P = 4.7e-05, N = 7824) (0.48, -0.061, P = 0.2, N = 859)
rs11243250(T)/6:8364262* intergenic (0.36, 0.0073, P = 4.6e-05, N = 7824) (0.75, -0.0052, P = 0.93, N = 859)
rs1890954(T)/6:8386802 intergenic (0.3, -0.008, P = 9.8e-06, N = 7824) (0.094, -0.13, P = 0.11, N = 859)
rs422252(A)/6:89893578 GABRR1 (0.48, -0.16, P = 9.5e-06, N = 1958) (0.54, 0.0024, P = 0.96, N = 859)
rs2190406(C)/7:108081246 NRCAM (0.29, 0.0073, P = 4.6e-05, N = 7824) (0.52, 0.067, P = 0.16, N = 859)
rs6467552(T)/7:134390473 intergenic (0.5, 0.0078, P = 1.4e-05, N = 7824) (0.69, -0.13, P = 0.011, N = 859)
rs2299893(A)/7:139618590* TBXAS1 (0.73, -0.0077, P = 3e-05, N = 7824) (0.35, 0.059, P = 0.24, N = 859)
rs940697(A)/7:143183203 EPHA1-AS1 (0.27, 0.0082, P = 5.7e-06, N = 7824) (0.36, -0.076, P = 0.13, N = 859)
rs2717875(T)/7:25222184 C7orf31 (0.93, 0.015, P = 1.5e-05, N = 7824) (0.77, 0.048, P = 0.39, N = 859)
rs17158507(A)/7:83642711 SEMA3A (0.13, -0.011, P = 3.2e-05, N = 7824) (0.077, -0.069, P = 0.45, N = 859)
rs2049649(G)/7:94949329 PON1 (0.31, -0.14, P = 8.7e-06, N = 1958) (0.44, -0.014, P = 0.78, N = 859)
rs6965510(T)/7:95229848* PDK4 (0.059, 0.015, P = 3.4e-05, N = 7824) (0.24, -0.048, P = 0.39, N = 859)
rs3133577(T)/8:101805542* intergenic (0.68, -0.0076, P = 2.3e-05, N = 7824) (0.53, 0.065, P = 0.18, N = 859)
rs7012644(T)/8:118736914* intergenic (0.25, 0.0077, P = 3.1e-05, N = 7824) (0.18, 0.023, P = 0.72, N = 859)
rs7837201(T)/8:133319798 KCNQ3 (0.8, -0.011, P = 2.3e-05, N = 7824) (0.56, 0.066, P = 0.17, N = 859)
rs2623859(T)/8:68677337 intergenic (0.93, 0.29, P = 2.7e-06, N = 1958) (0.87, 0.0081, P = 0.91, N = 859)
rs10093959(A)/8:78050644* intergenic (0.63, -0.0075, P = 2.7e-05, N = 7824) (0.37, -0.04, P = 0.42, N = 859)
rs1380634(A)/8:80237893 intergenic (0.74, -0.0083, P = 5.2e-06, N = 7824) (0.49, 0.023, P = 0.63, N = 859)
rs7465310(T)/8:80266503 intergenic (0.63, -0.008, P = 7.3e-06, N = 7824) (0.24, -0.038, P = 0.51, N = 859)
rs17461032(T)/8:81083077 TPD52 (0.71, -0.0077, P = 2.6e-05, N = 7824) (0.78, 0.017, P = 0.77, N = 859)
rs10818640(A)/9:100997156 TBC1D2 (0.27, 0.008, P = 1.3e-05, N = 7824) (0.17, 0.19, P = 0.0039, N = 859)
rs10978481(C)/9:109195928 RP11-308N19.1 (0.41, 0.0077, P = 1.7e-05, N = 7824) (0.076, 0.00082, P = 0.99, N = 859)
rs2093403(T)/9:117611913 RP11-78H18.2 (0.88, -0.011, P = 2.8e-05, N = 7824) (0.88, 0.0035, P = 0.96, N = 859)
rs2041472(C)/9:125539968* intergenic (0.017, 0.031, P = 1e-05, N = 7824) (0.27, 0.038, P = 0.49, N = 859)
rs11103845(A)/9:138252603* intergenic (0.05, 0.018, P = 2.7e-05, N = 7824) (0.011, 0.059, P = 0.79, N = 859)
rs868395(T)/9:85175793* RP11-15B24.5 (0.67, 0.01, P = 2e-08, N = 7824) (0.92, 0.18, P = 0.047, N = 859)
rs10992722(A)/9:96163761 intergenic (0.016, 0.033, P = 2.4e-06, N = 7824) (0.14, 0.061, P = 0.38, N = 859)
rs6479486(A)/9:96226164 FAM120A (0.98, -0.032, P = 2.7e-06, N = 7824) (0.94, 0.018, P = 0.86, N = 859)
Results from Univariable Mendelian Randomization of Citric acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 172 0.059 (-0.051- 0.17) P=0.29 3.3 27 1.74e-05 (0- 93) NA NA -0.0018 P=0.72
MR-Egger 172 0.068 (-0.053- 0.19) P=0.27 3.3 27 1.74e-05 (0- 93) 177 0.35 -0.0018 P=0.72
Weighted median 172 0.097 (-0.054- 0.25) P=0.21 3.3 27 1.74e-05 (0- 93) NA NA -0.0018 P=0.72
Results from Univariable MRPRESSO of Citric acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.06 0.06 1.05 0.3
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Citric acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 101 0.078 (-0.039- 0.2) P=0.19 5.1 25 0.0011 (0- 97.4) NA NA -0.0061 P=0.38
MR-Egger 101 0.1 (-0.027- 0.23) P=0.12 5.1 25 0.0011 (0- 97.4) 109 0.24 -0.0061 P=0.38
Weighted median 101 0.097 (-0.057- 0.25) P=0.22 5.1 25 0.0011 (0- 97.4) NA NA -0.0061 P=0.38
Results from Univariable MRPRESSO of Citric acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.08 0.06 1.3 0.2
beta.exposure Outlier-corrected NA NA NA NA

Citrulline

Instruments Associations with Citrulline & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Citrulline (Shin et al/Long et al) eGFR (CSSCD)
rs6678521(T)/1:107387839 intergenic (0.37, -0.007, P = 4.9e-05, N = 7824) (0.32, -0.062, P = 0.24, N = 859)
rs10858075(T)/1:115877522* NGF (0.41, -0.0091, P = 1.1e-07, N = 7824) (0.52, -0.04, P = 0.41, N = 859)
rs2486079(C)/1:116527617 SLC22A15 (0.7, -0.0071, P = 4.1e-05, N = 7824) (0.53, -0.067, P = 0.17, N = 859)
rs310101(A)/1:153040570* SPRR2B (0.96, 0.037, P = 3.9e-06, N = 7824) (0.65, 0.1, P = 0.046, N = 859)
rs72725073(T)/1:182552466 RNASEL (0.2, -0.18, P = 4.2e-06, N = 1955) (0.041, 0.0086, P = 0.94, N = 859)
rs7542381(A)/1:184635055 intergenic (0.01, 0.068, P = 2.6e-05, N = 7824) (0.1, 0.013, P = 0.87, N = 859)
rs1060060(T)/1:200143281* NR5A2 (0.3, -0.0073, P = 2.9e-05, N = 7824) (0.36, 0.073, P = 0.13, N = 859)
rs11119951(T)/1:212665790* intergenic (0.12, 0.012, P = 4.4e-06, N = 7824) (0.02, 0.15, P = 0.39, N = 859)
rs2799085(A)/1:218552455 TGFB2 (0.32, -0.012, P = 2.3e-05, N = 7824) (0.38, 0.049, P = 0.33, N = 859)
rs2247175(T)/1:97001894 intergenic (0.84, 0.24, P = 2.8e-06, N = 1955) (0.96, -0.082, P = 0.51, N = 859)
rs7099144(A)/10:101350970 intergenic (0.61, -0.0075, P = 1.2e-05, N = 7824) (0.59, -0.015, P = 0.76, N = 859)
rs430152(A)/10:119331597* CTA-109P11.1 (0.32, -0.007, P = 4.9e-05, N = 7824) (0.69, -0.0088, P = 0.87, N = 859)
rs7910118(A)/10:129958947 intergenic (0.12, -0.011, P = 1.3e-05, N = 7824) (0.15, -0.05, P = 0.44, N = 859)
rs3814664(C)/10:13740456 FRMD4A (0.69, -0.0071, P = 4.7e-05, N = 7824) (0.51, 0.0095, P = 0.85, N = 859)
rs10906682(T)/10:14500774 FRMD4A (0.87, 0.011, P = 4.1e-05, N = 7824) (0.66, 0.0041, P = 0.94, N = 859)
rs224768(A)/10:34281908 intergenic (0.29, 0.11, P = 4.6e-06, N = 1955) (0.53, -0.055, P = 0.26, N = 859)
rs4881230(G)/10:3939916 intergenic (0.74, -0.19, P = 3.1e-06, N = 1955) (0.53, 0.02, P = 0.69, N = 859)
rs12266210(T)/10:55188322* intergenic (0.3, -0.0074, P = 3.3e-05, N = 7824) (0.33, 0.0024, P = 0.96, N = 859)
rs2704467(A)/10:71530680* intergenic (0.28, -0.0074, P = 4.2e-05, N = 7824) (0.28, -0.022, P = 0.69, N = 859)
rs4244950(T)/10:86020700 RGR (0.64, -0.0072, P = 3.3e-05, N = 7824) (0.27, 0.059, P = 0.3, N = 859)
rs957646(T)/10:92064322 intergenic (0.97, 0.025, P = 3.6e-05, N = 7824) (0.78, -0.12, P = 0.036, N = 859)
rs4075311(T)/10:97574655 ENTPD1 (0.56, -0.0099, P = 5.5e-09, N = 7824) (0.66, -0.034, P = 0.51, N = 859)
rs1935815(A)/10:97631492 ENTPD1 (0.35, 0.011, P = 1.5e-10, N = 7824) (0.14, -0.0081, P = 0.91, N = 859)
rs10509698(A)/10:97792352 CC2D2B (0.076, 0.014, P = 2.4e-05, N = 7824) (0.046, 0.3, P = 0.0091, N = 859)
rs17030423(A)/12:101072465* intergenic (0.34, 0.0076, P = 1.2e-05, N = 7824) (0.41, 0.02, P = 0.67, N = 859)
rs323846(T)/12:125879853* TMEM132B (0.4, 0.007, P = 4.1e-05, N = 7824) (0.2, 0.024, P = 0.69, N = 859)
rs137938435(GA)/12:26377718 SSPN (0.24, 0.18, P = 7e-06, N = 1955) (0.031, 0.042, P = 0.76, N = 859)
rs7953233(A)/12:47223717* SLC38A4 (0.54, -0.007, P = 3.9e-05, N = 7824) (0.32, 0.058, P = 0.29, N = 859)
rs2711706(A)/12:47414993* intergenic (0.29, 0.19, P = 7e-07, N = 1955) (0.59, 0.0033, P = 0.94, N = 859)
rs1466383(T)/12:57231497 RP11-74M13.4 (0.27, 0.0075, P = 2.8e-05, N = 7824) (0.084, -0.083, P = 0.34, N = 859)
rs1546410(A)/12:61582882* intergenic (0.64, -0.0072, P = 3.8e-05, N = 7824) (0.42, -0.038, P = 0.43, N = 859)
rs6581892(A)/12:69817077 RP11-159A18.1 (0.68, 0.0075, P = 1.5e-05, N = 7824) (0.53, -0.014, P = 0.76, N = 859)
rs1868798(A)/12:7284081* CLSTN3 (0.14, -0.011, P = 3.5e-05, N = 7824) (0.2, 0.071, P = 0.24, N = 859)
rs1511589(A)/12:84061431* intergenic (0.46, 0.0077, P = 7.6e-06, N = 7824) (0.27, 0.013, P = 0.81, N = 859)
rs7305379(T)/12:86431706 MGAT4C (0.38, -0.15, P = 7.3e-07, N = 1955) (0.52, 0.079, P = 0.091, N = 859)
rs9514083(A)/13:103680517 intergenic (0.52, -0.0071, P = 3.7e-05, N = 7824) (0.32, 0.013, P = 0.81, N = 859)
rs12874443(T)/13:38304884 TRPC4 (0.43, -0.0075, P = 1.2e-05, N = 7824) (0.084, 0.084, P = 0.34, N = 859)
rs9566810(T)/13:42199332 VWA8 (0.28, 0.0076, P = 1.8e-05, N = 7824) (0.45, -0.013, P = 0.79, N = 859)
rs7331220(T)/13:43294055 intergenic (0.32, -0.0074, P = 2.4e-05, N = 7824) (0.32, 0.089, P = 0.086, N = 859)
rs35543760(C)/14:100221612 EML1 (0.29, 0.18, P = 6.8e-06, N = 1955) (0.12, 0.0014, P = 0.98, N = 859)
rs12147171(C)/14:20529449 OR4L1 (0.12, -0.012, P = 4.8e-06, N = 7824) (0.027, -0.083, P = 0.57, N = 859)
rs11848535(T)/14:20777431* TTC5 (0.44, 0.16, P = 3e-06, N = 1955) (0.26, -0.091, P = 0.1, N = 859)
rs8021336(A)/14:32733465 intergenic (0.31, -0.0086, P = 9.9e-07, N = 7824) (0.31, 0.0079, P = 0.88, N = 859)
rs7157943(A)/14:32754446* intergenic (0.93, 0.015, P = 8.1e-06, N = 7824) (0.81, 0.024, P = 0.7, N = 859)
rs17105196(T)/14:37208917* SLC25A21 (0.28, -0.0074, P = 2.1e-05, N = 7824) (0.16, -0.081, P = 0.22, N = 859)
rs996326(A)/14:40687518* intergenic (0.88, 0.011, P = 1.2e-05, N = 7824) (0.92, -0.098, P = 0.28, N = 859)
rs3916613(T)/14:59552553 intergenic (0.12, 0.011, P = 3.4e-05, N = 7824) (0.1, -0.066, P = 0.4, N = 859)
rs2842322(A)/14:68915416 RAD51B (0.31, -0.0076, P = 1e-05, N = 7824) (0.21, -0.086, P = 0.15, N = 859)
rs11626446(A)/14:78710044 NRXN3 (0.27, -0.0097, P = 2.7e-05, N = 7824) (0.12, -0.1, P = 0.17, N = 859)
rs2057311(C)/14:86086438 FLRT2 (0.58, 0.0074, P = 1.9e-05, N = 7824) (0.58, 0.00029, P = 1, N = 859)
rs2959197(A)/15:101606890 LRRK1 (0.3, -0.0072, P = 4.1e-05, N = 7824) (0.096, 0.21, P = 0.0083, N = 859)
rs892775(A)/15:33824530 RYR3 (0.74, 0.2, P = 2.6e-06, N = 1955) (0.31, -0.053, P = 0.3, N = 859)
rs28631731(C)/15:36829334 intergenic (0.39, 0.16, P = 3.2e-06, N = 1955) (0.45, -0.15, P = 0.0023, N = 859)
rs17718330(T)/15:40123349* GPR176 (0.7, 0.0072, P = 4.2e-05, N = 7824) (0.86, 0.017, P = 0.81, N = 859)
rs10518834(A)/15:56345066* intergenic (0.64, -0.0071, P = 3.9e-05, N = 7824) (0.76, -0.034, P = 0.55, N = 859)
rs8033140(T)/15:68198741* intergenic (0.35, 0.008, P = 4.3e-06, N = 7824) (0.094, -0.086, P = 0.3, N = 859)
rs11634207(A)/15:93526003* CHD2 (0.72, 0.0074, P = 2.8e-05, N = 7824) (0.8, 0.026, P = 0.67, N = 859)
rs1437588(A)/15:96809782 NR2F2-AS1 (0.48, 0.0078, P = 7.7e-06, N = 7824) (0.12, 0.15, P = 0.037, N = 859)
rs3112726(T)/16:2748699* KCTD5 (0.46, 0.0073, P = 3.2e-05, N = 7824) (0.68, -0.035, P = 0.49, N = 859)
rs9806843(A)/16:58704861* SLC38A7 (0.6, -0.0073, P = 2.4e-05, N = 7824) (0.5, -0.059, P = 0.22, N = 859)
rs7194755(T)/16:7064036* RBFOX1 (0.26, -0.0099, P = 1.9e-05, N = 7824) (0.16, -0.061, P = 0.36, N = 859)
rs10781983(A)/16:77441179* ADAMTS18 (0.63, -0.0071, P = 5e-05, N = 7824) (0.35, 0.0079, P = 0.88, N = 859)
rs8054103(A)/16:87420182 FBXO31 (0.55, 0.0071, P = 2.7e-05, N = 7824) (0.11, -0.0028, P = 0.97, N = 859)
rs758186(T)/17:12500658 LINC00670 (0.65, -0.0077, P = 8.7e-06, N = 7824) (0.53, -0.03, P = 0.53, N = 859)
rs733099(A)/17:4658971* intergenic (0.27, 0.0076, P = 1.4e-05, N = 7824) (0.22, -0.023, P = 0.69, N = 859)
rs12600861(C)/17:7355621 CHRNB1 (0.33, -0.14, P = 2.5e-06, N = 1955) (0.37, -0.042, P = 0.39, N = 859)
rs4791811(A)/17:9066853 NTN1 (0.71, 0.0077, P = 1.2e-05, N = 7824) (0.63, -0.029, P = 0.56, N = 859)
rs17681684(A)/17:9792768* GLP2R (0.32, 0.0085, P = 1e-06, N = 7824) (0.054, -0.07, P = 0.5, N = 859)
rs539904(A)/18:22085351 intergenic (0.71, -0.0086, P = 1.5e-06, N = 7824) (0.95, 0.17, P = 0.15, N = 859)
rs544049(A)/18:44204713* LOXHD1 (0.12, -0.011, P = 2.3e-05, N = 7824) (0.23, 0.039, P = 0.49, N = 859)
rs8097717(A)/18:69913058* intergenic (0.44, 0.0069, P = 4.5e-05, N = 7824) (0.43, 0.045, P = 0.36, N = 859)
rs6510448(T)/19:35240154 intergenic (0.67, 0.0077, P = 8.1e-06, N = 7824) (0.59, -0.12, P = 0.017, N = 859)
rs7597477(A)/2:104826331* intergenic (0.93, -0.015, P = 6.8e-06, N = 7824) (0.87, 0.11, P = 0.12, N = 859)
rs2723163(T)/2:113694339 AC079753.5 (0.45, -0.0069, P = 4.5e-05, N = 7824) (0.2, -0.0053, P = 0.93, N = 859)
rs11123366(T)/2:117209104 intergenic (0.86, -0.011, P = 1.6e-05, N = 7824) (0.85, 0.075, P = 0.27, N = 859)
rs7594831(T)/2:204439701 intergenic (0.28, 0.0074, P = 2.2e-05, N = 7824) (0.3, 0.047, P = 0.36, N = 859)
rs1374708(T)/2:205316761 intergenic (0.87, 0.011, P = 2.9e-05, N = 7824) (0.75, 0.031, P = 0.58, N = 859)
rs10190763(T)/2:20573168 intergenic (0.31, 0.0074, P = 1.9e-05, N = 7824) (0.28, -0.059, P = 0.27, N = 859)
rs879126(T)/2:207922006* intergenic (0.33, -0.0086, P = 7.5e-07, N = 7824) (0.37, 0.074, P = 0.12, N = 859)
rs759663(A)/2:208080975* AC007879.1 (0.68, -0.0072, P = 3.8e-05, N = 7824) (0.85, 0.04, P = 0.55, N = 859)
rs2007748(T)/2:211357642 CPS1 (0.53, 0.0095, P = 2.1e-08, N = 7824) (0.2, 0.00063, P = 0.99, N = 859)
rs1509820(A)/2:211386484* CPS1 (0.53, 0.0096, P = 1.7e-08, N = 7824) (0.2, -0.0065, P = 0.91, N = 859)
rs2544307(A)/2:211403117* CPS1 (0.39, -0.0078, P = 5.3e-06, N = 7824) (0.43, -0.056, P = 0.26, N = 859)
rs13010668(T)/2:211470493* CPS1 (0.85, 0.013, P = 3.6e-07, N = 7824) (0.7, -0.016, P = 0.77, N = 859)
rs12470865(A)/2:211557762* intergenic (0.27, 0.009, P = 3.2e-07, N = 7824) (0.3, -0.11, P = 0.041, N = 859)
rs10164524(A)/2:211664333* intergenic (0.68, -0.01, P = 1.1e-08, N = 7824) (0.83, 0.044, P = 0.5, N = 859)
rs895663(C)/2:30874360 intergenic (0.28, -0.2, P = 7e-06, N = 1955) (0.48, -0.029, P = 0.54, N = 859)
rs6740771(T)/2:39789288 AC007246.3 (0.55, -0.14, P = 8.8e-06, N = 1955) (0.24, 0.023, P = 0.69, N = 859)
rs6040877(A)/20:11756767* intergenic (0.27, -0.0081, P = 4e-06, N = 7824) (0.63, 0.039, P = 0.43, N = 859)
rs2809591(A)/20:11763357 intergenic (0.34, -0.0074, P = 1.8e-05, N = 7824) (0.39, -0.015, P = 0.76, N = 859)
rs6136859(T)/20:19833437* intergenic (0.46, 0.0071, P = 3.8e-05, N = 7824) (0.19, 0.067, P = 0.28, N = 859)
rs11086175(T)/20:45137362 ZNF334 (0.51, -0.014, P = 1.9e-05, N = 7824) (0.35, -0.023, P = 0.65, N = 859)
rs163781(A)/20:57563765 NELFCD (0.53, -0.0074, P = 1.6e-05, N = 7824) (0.69, -0.036, P = 0.5, N = 859)
rs229084(A)/21:28251329 intergenic (0.47, -0.0077, P = 6.6e-06, N = 7824) (0.21, -0.12, P = 0.034, N = 859)
rs8140086(A)/22:36610386 intergenic (0.59, -0.0069, P = 4.9e-05, N = 7824) (0.33, -0.0068, P = 0.9, N = 859)
rs1920325(T)/3:103866190* intergenic (0.64, -0.0081, P = 3.7e-06, N = 7824) (0.81, 0.049, P = 0.42, N = 859)
rs11128648(C)/3:13643640 FBLN2 (0.49, -0.007, P = 4.2e-05, N = 7824) (0.4, -0.08, P = 0.11, N = 859)
rs7615965(T)/3:171041464* TNIK (0.71, 0.0086, P = 4.1e-06, N = 7824) (0.61, 0.0089, P = 0.86, N = 859)
rs9824791(A)/3:171061886 TNIK (0.48, 0.0079, P = 6e-06, N = 7824) (0.26, -0.019, P = 0.73, N = 859)
rs11129411(A)/3:30535423 intergenic (0.38, -0.0075, P = 2.3e-05, N = 7824) (0.64, 0.051, P = 0.3, N = 859)
rs73067534(G)/3:32283278* CMTM8 (0.2, -0.21, P = 9.9e-06, N = 1955) (0.038, -0.14, P = 0.29, N = 859)
rs12636544(T)/3:82449136 RP11-260O18.1 (0.2, 0.17, P = 4.2e-06, N = 1955) (0.19, 0.053, P = 0.38, N = 859)
rs1380162(A)/4:119970203* SYNPO2 (0.33, 0.0076, P = 1.4e-05, N = 7824) (0.22, 0.03, P = 0.61, N = 859)
rs12499180(A)/4:130953329 intergenic (0.98, 0.058, P = 2e-05, N = 7824) (0.38, -0.0048, P = 0.92, N = 859)
rs13105113(A)/4:136527846 intergenic (0.88, 0.011, P = 9.2e-06, N = 7824) (0.9, 0.11, P = 0.18, N = 859)
rs706333(T)/4:140517700* SETD7 (0.46, 0.015, P = 1e-05, N = 7824) (0.35, -0.044, P = 0.38, N = 859)
rs1921568(T)/4:185080276* ENPP6 (0.29, 0.0073, P = 3.2e-05, N = 7824) (0.32, -0.12, P = 0.03, N = 859)
rs7696056(C)/4:22549862 intergenic (0.39, -0.014, P = 4.5e-05, N = 7824) (0.21, -0.0053, P = 0.93, N = 859)
rs1089073(G)/4:24788474 SOD3 (0.98, -0.34, P = 1.1e-06, N = 1955) (0.93, 0.036, P = 0.71, N = 859)
rs4692169(A)/4:27124674* intergenic (0.58, -0.0074, P = 1.7e-05, N = 7824) (0.31, 0.041, P = 0.44, N = 859)
rs10489008(A)/4:31718284* intergenic (0.49, -0.0076, P = 7.4e-06, N = 7824) (0.87, -0.047, P = 0.52, N = 859)
rs13122712(A)/4:39801668 intergenic (0.65, -0.14, P = 1e-06, N = 1955) (0.32, 0.011, P = 0.83, N = 859)
rs11721409(T)/4:7753417* AFAP1-AS1 (0.32, 0.0074, P = 1.9e-05, N = 7824) (0.1, 0.021, P = 0.8, N = 859)
rs11940899(T)/4:78352372 RP11-625I7.1 (0.34, -0.0075, P = 1.8e-05, N = 7824) (0.52, 0.089, P = 0.074, N = 859)
rs16841570(T)/4:8016164* ABLIM2 (0.97, 0.025, P = 8.6e-06, N = 7824) (0.96, 0.031, P = 0.8, N = 859)
rs10477454(T)/5:109636551 TMEM232 (0.017, -0.037, P = 4.6e-06, N = 7824) (0.5, 0.023, P = 0.63, N = 859)
rs17142889(T)/5:117041009 intergenic (0.13, 0.011, P = 9.9e-06, N = 7824) (0.68, 0.15, P = 0.003, N = 859)
rs17450677(T)/5:143919043 RN7SKP246 (0.97, 0.021, P = 1.9e-05, N = 7824) (0.98, -0.012, P = 0.95, N = 859)
rs2400156(A)/5:144052940 intergenic (0.84, -0.019, P = 3.1e-05, N = 7824) (0.81, -0.043, P = 0.48, N = 859)
rs6889120(T)/5:158093340 intergenic (0.94, -0.034, P = 7.4e-06, N = 7824) (0.73, -0.064, P = 0.23, N = 859)
rs76001528(C)/5:163839445 CTC-340A15.2 (0.097, -0.2, P = 4.2e-06, N = 1955) (0.16, -0.059, P = 0.37, N = 859)
rs10866666(T)/5:173036786 BOD1 (0.22, -0.21, P = 2.1e-06, N = 1955) (0.028, 0.15, P = 0.3, N = 859)
rs682103(T)/5:53394938* ARL15 (0.71, -0.0097, P = 4.3e-08, N = 7824) (0.93, -0.14, P = 0.15, N = 859)
rs4143655(A)/5:66824167* RP11-434D9.1 (0.14, -0.011, P = 3.6e-05, N = 7824) (0.52, 0.042, P = 0.38, N = 859)
rs224807(A)/5:81686624* ATP6AP1L (0.29, -0.0072, P = 4e-05, N = 7824) (0.28, 0.016, P = 0.77, N = 859)
rs9400834(T)/6:115675458* RP11-126M14.1 (0.7, 0.008, P = 5.6e-06, N = 7824) (0.91, 0.16, P = 0.062, N = 859)
rs9401513(A)/6:122675030 intergenic (0.86, -0.022, P = 3.4e-05, N = 7824) (0.68, -0.093, P = 0.072, N = 859)
rs10456994(T)/6:132515568* intergenic (0.52, -0.007, P = 4.3e-05, N = 7824) (0.79, -0.022, P = 0.71, N = 859)
rs2506864(T)/6:141041299* intergenic (0.41, -0.0076, P = 8.8e-06, N = 7824) (0.37, -0.015, P = 0.77, N = 859)
rs619095(C)/6:169098800* intergenic (0.64, -0.0073, P = 2.7e-05, N = 7824) (0.12, -0.047, P = 0.52, N = 859)
rs7747114(G)/6:29919774* HLA-W (0.53, 0.16, P = 9.9e-06, N = 1955) (0.68, 0.046, P = 0.35, N = 859)
rs112100248(T)/6:30798476* LINC00243 (0.02, 0.51, P = 2.4e-06, N = 1955) (0.035, -0.093, P = 0.46, N = 859)
rs9267536(C)/6:31651194 LY6G5C (0.039, 0.43, P = 3e-06, N = 1955) (0.079, 0.05, P = 0.57, N = 859)
rs239787(A)/6:54798887 FAM83B (0.17, -0.01, P = 4.4e-05, N = 7824) (0.32, -0.13, P = 0.01, N = 859)
rs6899649(T)/6:54892267* intergenic (0.38, 0.0072, P = 2.4e-05, N = 7824) (0.41, 0.059, P = 0.23, N = 859)
rs3846917(T)/6:55257798* GFRAL (0.12, -0.011, P = 4.5e-05, N = 7824) (0.45, -0.022, P = 0.65, N = 859)
rs9354336(T)/6:66609594 intergenic (0.87, 0.011, P = 8.6e-06, N = 7824) (0.87, -0.11, P = 0.11, N = 859)
rs779463(T)/6:69942066 BAI3 (0.3, -0.0077, P = 9.5e-06, N = 7824) (0.048, 0.086, P = 0.46, N = 859)
rs2487410(T)/6:70547652 intergenic (0.47, -0.0081, P = 1.8e-06, N = 7824) (0.54, -0.019, P = 0.69, N = 859)
rs6925293(T)/6:99054479 intergenic (0.58, 0.0073, P = 2.3e-05, N = 7824) (0.12, -0.067, P = 0.35, N = 859)
rs10234187(T)/7:11216782 AC004538.3 (0.32, 0.0085, P = 1.1e-06, N = 7824) (0.31, 0.041, P = 0.42, N = 859)
rs3778842(T)/7:134474096* CALD1 (0.68, 0.0077, P = 1.1e-05, N = 7824) (0.73, 0.058, P = 0.28, N = 859)
rs6952398(T)/7:151396253 PRKAG2 (0.63, -0.0081, P = 1.5e-05, N = 7824) (0.43, 0.0087, P = 0.86, N = 859)
rs12701265(A)/7:32971236* RP9P (0.39, 0.0086, P = 7.4e-07, N = 7824) (0.068, -0.02, P = 0.84, N = 859)
rs17821771(T)/7:33973249 BMPER (0.35, -0.0082, P = 1.9e-06, N = 7824) (0.27, -0.00061, P = 0.99, N = 859)
rs17670957(T)/7:54412203 RP11-436F9.1 (0.39, 0.007, P = 4.4e-05, N = 7824) (0.39, -0.02, P = 0.69, N = 859)
rs28662(T)/7:92775019 SAMD9L (0.18, -0.011, P = 1.3e-05, N = 7824) (0.077, -0.031, P = 0.74, N = 859)
rs17766353(T)/8:10254824 MSRA (0.14, 0.011, P = 4.9e-05, N = 7824) (0.034, 0.061, P = 0.65, N = 859)
rs10955258(T)/8:102593321 GRHL2 (0.23, -0.0097, P = 4.3e-05, N = 7824) (0.25, -0.058, P = 0.3, N = 859)
rs13267180(A)/8:10466482* RP1L1 (0.48, 0.0081, P = 3.8e-06, N = 7824) (0.41, 0.012, P = 0.81, N = 859)
rs7001456(C)/8:10804865 XKR6 (0.61, -0.0078, P = 5.1e-06, N = 7824) (0.64, -0.067, P = 0.17, N = 859)
rs6601541(T)/8:10830743* XKR6 (0.63, -0.0074, P = 2.3e-05, N = 7824) (0.27, -0.062, P = 0.25, N = 859)
rs2350885(A)/8:111233137 intergenic (0.35, -0.0079, P = 8.7e-06, N = 7824) (0.68, 0.019, P = 0.72, N = 859)
rs6994363(A)/8:11125062* LINC00529 (0.87, -0.012, P = 2.5e-06, N = 7824) (0.63, -0.11, P = 0.031, N = 859)
rs73367050(T)/8:134689892 intergenic (0.048, 0.28, P = 6.3e-06, N = 1955) (0.11, 0.05, P = 0.52, N = 859)
rs34161175(T)/8:23631530 RP11-175E9.1 (0.36, 0.19, P = 3.8e-06, N = 1955) (0.065, 0.0084, P = 0.93, N = 859)
rs11993007(A)/8:28307911 FBXO16 (0.32, -0.013, P = 5.2e-06, N = 7824) (0.62, 0.038, P = 0.44, N = 859)
rs6999701(A)/8:74678452 RP11-463D19.2 (0.89, -0.014, P = 1.4e-05, N = 7824) (0.88, -0.021, P = 0.78, N = 859)
rs10504742(A)/8:82788367* intergenic (0.55, -0.0081, P = 2.6e-06, N = 7824) (0.87, 0.003, P = 0.97, N = 859)
rs1610360(A)/9:12385710* intergenic (0.67, 0.008, P = 4.6e-06, N = 7824) (0.76, -0.081, P = 0.14, N = 859)
rs76266684(G)/9:132755555 FNBP1 (0.081, 0.29, P = 1.3e-06, N = 1955) (0.032, 0.073, P = 0.6, N = 859)
rs10901320(A)/9:133290721 HMCN2 (0.43, 0.0087, P = 4.3e-07, N = 7824) (0.27, -0.098, P = 0.073, N = 859)
rs10901047(T)/9:133323675 ASS1 (0.59, -0.009, P = 3e-07, N = 7824) (0.76, 0.024, P = 0.66, N = 859)
rs554710(T)/9:136181848* LCN1P2 (0.71, -0.0084, P = 1.6e-06, N = 7824) (0.46, -0.078, P = 0.11, N = 859)
rs4961685(A)/9:16249141* C9orf92 (0.33, -0.0073, P = 2.4e-05, N = 7824) (0.3, 0.039, P = 0.45, N = 859)
rs12348439(T)/9:89869968 intergenic (0.055, -0.018, P = 1.3e-05, N = 7824) (0.19, 0.1, P = 0.089, N = 859)
Results from Univariable Mendelian Randomization of Citrulline & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 166 -0.052 (-0.19- 0.081) P=0.44 3.8 31 1.01 (0- 91.6) NA NA 0.003 P=0.58
MR-Egger 166 -0.072 (-0.22- 0.079) P=0.35 3.8 31 1.01 (0- 91.6) 188 0.096 0.003 P=0.58
Weighted median 166 0.012 (-0.18- 0.2) P=0.9 3.8 31 1.01 (0- 91.6) NA NA 0.003 P=0.58
Results from Univariable MRPRESSO of Citrulline & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.07 -0.77 0.45
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Citrulline & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 96 -0.06 (-0.22- 0.1) P=0.46 5.1 24 2.6 (0- 96.7) NA NA 0.0022 P=0.78
MR-Egger 96 -0.074 (-0.26- 0.11) P=0.44 5.1 24 2.6 (0- 96.7) 121 0.033 0.0022 P=0.78
Weighted median 96 0.031 (-0.17- 0.23) P=0.77 5.1 24 2.6 (0- 96.7) NA NA 0.0022 P=0.78
Results from Univariable MRPRESSO of Citrulline & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.06 0.08 -0.73 0.46
beta.exposure Outlier-corrected NA NA NA NA

Creatinine

Instruments Associations with Creatinine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Creatinine (Shin et al/Long et al) eGFR (CSSCD)
rs6537817(C)/1:114752168* RP4-543J13.1 (0.82, -0.0078, P = 1.2e-05, N = 7824) (0.58, 0.085, P = 0.078, N = 859)
rs4460629(T)/1:155135335 intergenic (0.52, -0.0045, P = 2.2e-06, N = 7824) (0.3, 0.043, P = 0.42, N = 859)
rs6424850(A)/1:182344926 intergenic (0.48, 0.14, P = 8.5e-07, N = 1958) (0.74, 0.045, P = 0.4, N = 859)
rs815759(A)/1:189907398 intergenic (0.048, 0.014, P = 2.8e-05, N = 7824) (0.012, -0.051, P = 0.82, N = 859)
rs10159366(A)/1:204975980 NFASC (0.87, 0.008, P = 2.5e-05, N = 7824) (0.96, 0.023, P = 0.86, N = 859)
rs6663614(A)/1:213097941* intergenic (0.21, -0.01, P = 3.1e-06, N = 7824) (0.23, -0.1, P = 0.073, N = 859)
rs496018(T)/1:238079056* RP11-193H5.1 (0.2, 0.16, P = 1.2e-06, N = 1958) (0.66, 0.11, P = 0.037, N = 859)
rs12142891(C)/1:61652197* NFIA (0.098, 0.23, P = 6.6e-06, N = 1958) (0.015, 0.19, P = 0.33, N = 859)
rs1498350(A)/1:67294143* WDR78 (0.5, 0.0045, P = 1.9e-06, N = 7824) (0.62, 0.047, P = 0.33, N = 859)
rs394282(A)/1:8284657 RP11-431K24.4 (0.11, -0.016, P = 1e-06, N = 7824) (0.22, -0.013, P = 0.83, N = 859)
rs1116866(T)/1:96976835 intergenic (0.1, 0.0094, P = 2.9e-07, N = 7824) (0.027, 0.084, P = 0.58, N = 859)
rs2694773(A)/10:117844652* GFRA1 (0.92, 0.023, P = 2.8e-05, N = 7824) (0.75, 0.0027, P = 0.96, N = 859)
rs11599763(T)/10:11855599* intergenic (0.39, -0.0069, P = 3.2e-05, N = 7824) (0.51, 0.035, P = 0.48, N = 859)
rs10749270(G)/10:120542167* U3 (0.75, 0.21, P = 7.1e-06, N = 1958) (0.69, 0.055, P = 0.3, N = 859)
rs7910801(A)/10:126037889 intergenic (0.96, 0.015, P = 4.5e-05, N = 7824) (0.81, -0.0066, P = 0.92, N = 859)
rs12269670(A)/10:132619537 intergenic (0.97, -0.015, P = 4.3e-05, N = 7824) (0.81, 0.003, P = 0.96, N = 859)
rs703067(T)/10:31909119* intergenic (0.48, 0.18, P = 5.2e-06, N = 1958) (0.25, 0.026, P = 0.65, N = 859)
rs2289804(A)/10:69993032 ATOH7 (0.93, -0.014, P = 1.2e-07, N = 7824) (0.56, -0.017, P = 0.72, N = 859)
rs10823168(T)/10:70019917 KRT19P4 (0.055, 0.013, P = 6.2e-07, N = 7824) (0.16, 0.014, P = 0.82, N = 859)
rs10998157(A)/10:70188523* DNA2 (0.051, 0.011, P = 4.7e-05, N = 7824) (0.16, -0.041, P = 0.54, N = 859)
rs7073038(T)/10:70308535 TMEM14D (0.038, 0.015, P = 1.9e-05, N = 7824) (0.13, -0.053, P = 0.47, N = 859)
rs827334(A)/10:72676412* intergenic (0.12, 0.0076, P = 3.8e-05, N = 7824) (0.025, 0.038, P = 0.8, N = 859)
rs75751082(A)/10:73205549 CDH23 (0.11, -0.19, P = 3.1e-06, N = 1958) (0.077, -0.064, P = 0.48, N = 859)
rs7087345(A)/10:78651808 KCNMA1 (0.95, 0.011, P = 4.9e-05, N = 7824) (0.85, -0.0042, P = 0.95, N = 859)
rs12218515(C)/10:91054291 LIPA (0.86, 0.0075, P = 2.6e-05, N = 7824) (0.88, -0.034, P = 0.64, N = 859)
rs12770938(A)/10:91606212 intergenic (0.11, 0.0077, P = 2.9e-05, N = 7824) (0.33, -0.032, P = 0.54, N = 859)
rs17094111(T)/10:92121337 intergenic (0.92, 0.01, P = 4.8e-05, N = 7824) (0.95, 0.022, P = 0.84, N = 859)
rs482007(T)/11:100228729* CNTN5 (0.89, 0.0077, P = 2.5e-05, N = 7824) (0.8, -0.16, P = 0.0074, N = 859)
rs4937771(A)/11:133307073 snoU13 (0.042, 0.014, P = 2.6e-05, N = 7824) (0.53, 0.019, P = 0.68, N = 859)
rs12801550(T)/11:13993754 SPON1 (0.87, 0.0088, P = 9.6e-07, N = 7824) (0.98, -0.24, P = 0.2, N = 859)
rs11037075(A)/11:42827511* intergenic (0.87, 0.0074, P = 4.8e-05, N = 7824) (0.76, -0.017, P = 0.76, N = 859)
rs11038386(T)/11:45316625* intergenic (0.98, 0.022, P = 2.2e-05, N = 7824) (0.74, -0.029, P = 0.6, N = 859)
rs6578854(A)/11:7385437 SYT9 (0.93, 0.011, P = 3e-05, N = 7824) (0.76, 0.051, P = 0.35, N = 859)
rs11054328(T)/12:11663755 RP11-434C1.3 (0.11, 0.0088, P = 1.5e-06, N = 7824) (0.16, -0.035, P = 0.59, N = 859)
rs2286044(A)/12:120571084 GCN1L1 (0.87, 0.0076, P = 2.3e-05, N = 7824) (0.85, -0.056, P = 0.4, N = 859)
rs10745813(A)/12:98265464 intergenic (0.81, 0.0077, P = 1.4e-05, N = 7824) (0.9, -0.058, P = 0.48, N = 859)
rs9577511(G)/13:113991823 GRTP1 (0.13, 0.21, P = 1e-06, N = 1958) (0.21, 0.1, P = 0.09, N = 859)
rs16943547(A)/13:90552861 intergenic (0.97, 0.018, P = 3.5e-05, N = 7824) (0.98, 0.17, P = 0.31, N = 859)
rs8181962(A)/14:26598213* RP11-314P15.2 (0.14, -0.0077, P = 2.1e-05, N = 7824) (0.2, -0.11, P = 0.081, N = 859)
rs2933188(G)/14:47382492* MDGA2 (0.96, -0.4, P = 6.5e-06, N = 1958) (0.53, -0.023, P = 0.63, N = 859)
rs1044538(A)/14:70833537 SYNJ2BP (0.071, -0.011, P = 1.1e-05, N = 7824) (0.1, -0.073, P = 0.34, N = 859)
rs2332376(T)/14:70889285 RP11-486O13.4 (0.074, -0.011, P = 2e-05, N = 7824) (0.065, -0.017, P = 0.86, N = 859)
rs4904742(T)/14:91510838 RPS6KA5 (0.75, -0.0077, P = 1.2e-05, N = 7824) (0.9, 0.0086, P = 0.92, N = 859)
rs10519445(A)/15:24106808 intergenic (0.53, -0.0045, P = 1.8e-06, N = 7824) (0.18, -0.038, P = 0.53, N = 859)
rs11638382(T)/15:29496888 FAM189A1 (0.19, -0.017, P = 5.1e-06, N = 7824) (0.077, -0.13, P = 0.13, N = 859)
rs12914647(A)/15:56594033 TEX9 (0.46, 0.13, P = 3.6e-06, N = 1958) (0.15, -0.088, P = 0.2, N = 859)
rs12324230(T)/15:75806911 PTPN9 (0.52, 0.0042, P = 8.7e-06, N = 7824) (0.81, 0.018, P = 0.76, N = 859)
rs12916220(T)/15:97091511 CTD-2027G2.1 (0.15, -0.0077, P = 3.5e-05, N = 7824) (0.34, -0.008, P = 0.87, N = 859)
rs11574941(A)/16:30493000 ITGAL (0.13, 0.0078, P = 2.3e-05, N = 7824) (0.028, -0.0073, P = 0.96, N = 859)
rs113479674(C)/16:82193037 MPHOSPH6 (0.11, -0.25, P = 7.1e-07, N = 1958) (0.058, 0.066, P = 0.52, N = 859)
rs146693640(GT)/16:82193730 MPHOSPH6 (0.12, -0.23, P = 5.2e-06, N = 1958) (0.074, 0.041, P = 0.65, N = 859)
rs6502247(A)/17:13203562 AC003664.1 (0.12, -0.009, P = 6.8e-06, N = 7824) (0.58, 0.0089, P = 0.85, N = 859)
rs12103754(T)/17:70912339* SLC39A11 (0.26, -0.21, P = 8.2e-06, N = 1958) (0.19, -0.0023, P = 0.97, N = 859)
rs12961855(A)/18:11670845 RP11-677O4.2 (0.48, 0.0039, P = 4e-05, N = 7824) (0.82, 0.081, P = 0.2, N = 859)
rs10421262(T)/19:14172951 PALM3 (0.69, -0.021, P = 2.7e-05, N = 7824) (0.48, -0.041, P = 0.41, N = 859)
rs4803352(T)/19:41159193* intergenic (0.87, -0.0079, P = 1.4e-05, N = 7824) (0.78, -0.083, P = 0.15, N = 859)
rs10426415(A)/19:41183590* NUMBL (0.88, -0.0086, P = 3.1e-06, N = 7824) (0.8, -0.041, P = 0.49, N = 859)
rs12459641(G)/19:7560784 C19orf45 (0.19, 0.23, P = 9.6e-06, N = 1958) (0.29, 0.052, P = 0.33, N = 859)
rs10202838(C)/2:12749003* AC096559.2 (0.53, 0.014, P = 3.3e-06, N = 7824) (0.12, -0.046, P = 0.52, N = 859)
rs355818(A)/2:165707855 AC019181.2 (0.89, 0.0078, P = 2.2e-05, N = 7824) (0.6, 0.012, P = 0.81, N = 859)
rs1374355(A)/2:200156193 SATB2 (0.11, 0.0083, P = 8.6e-06, N = 7824) (0.46, 0.011, P = 0.82, N = 859)
rs13414802(A)/2:210732686* UNC80 (0.88, 0.0077, P = 2.9e-05, N = 7824) (0.65, -0.021, P = 0.67, N = 859)
rs2048277(A)/2:211151774* MYL1 (0.9, 0.0083, P = 8.8e-06, N = 7824) (0.78, 0.00076, P = 0.99, N = 859)
rs62192370(G)/2:237254757 IQCA1 (0.38, 0.14, P = 6.8e-07, N = 1958) (0.26, 0.0014, P = 0.98, N = 859)
rs35202902(T)/2:240734453 intergenic (0.27, -0.16, P = 3.3e-06, N = 1958) (0.079, -0.13, P = 0.14, N = 859)
rs10175998(C)/2:38559325 ATL2 (0.28, 0.15, P = 1.5e-06, N = 1958) (0.32, -0.02, P = 0.69, N = 859)
rs917969(T)/2:40207338 SLC8A1-AS1 (0.24, 0.0071, P = 4.3e-05, N = 7824) (0.87, -0.02, P = 0.77, N = 859)
rs7596081(A)/2:46464297 intergenic (0.53, -0.14, P = 1.7e-06, N = 1958) (0.46, -0.03, P = 0.53, N = 859)
rs13031396(T)/2:60717399* BCL11A (0.25, -0.0076, P = 9.2e-06, N = 7824) (0.074, -0.19, P = 0.035, N = 859)
rs2219379(A)/2:6711467 intergenic (0.2, 0.0072, P = 4.1e-05, N = 7824) (0.31, -0.12, P = 0.017, N = 859)
rs11694230(T)/2:6839127 intergenic (0.34, -0.0075, P = 9e-06, N = 7824) (0.13, -0.019, P = 0.79, N = 859)
rs4853412(C)/2:79019736 intergenic (0.46, -0.14, P = 8.1e-06, N = 1958) (0.24, -0.014, P = 0.81, N = 859)
rs7263330(A)/20:31534701 intergenic (0.035, -0.015, P = 1.6e-05, N = 7824) (0.13, -0.13, P = 0.06, N = 859)
rs925300(C)/20:5624244 intergenic (0.48, -0.19, P = 1.2e-06, N = 1958) (0.71, 0.07, P = 0.18, N = 859)
rs2833854(A)/21:33869440* EVA1C (0.86, -0.0076, P = 2.1e-05, N = 7824) (0.89, -0.14, P = 0.07, N = 859)
rs3895614(T)/21:43182633* RIPK4 (0.11, -0.0081, P = 1.5e-05, N = 7824) (0.12, -0.016, P = 0.83, N = 859)
rs17002948(T)/22:42688724 TCF20 (0.86, 0.0079, P = 1.9e-05, N = 7824) (0.83, -0.071, P = 0.27, N = 859)
rs1955135(A)/3:105164872* ALCAM (0.87, 0.008, P = 1e-05, N = 7824) (0.83, 0.016, P = 0.8, N = 859)
rs4684042(A)/3:10559202* ATP2B2 (0.98, -0.023, P = 1.2e-05, N = 7824) (0.84, -0.012, P = 0.86, N = 859)
rs2007634(A)/3:139678136* CLSTN2 (0.59, 0.2, P = 5.1e-07, N = 1958) (0.23, -0.018, P = 0.75, N = 859)
rs11715139(A)/3:171732927 intergenic (0.82, 0.0072, P = 4.2e-05, N = 7824) (0.78, 0.12, P = 0.042, N = 859)
rs11925770(T)/3:36339059* intergenic (0.015, -0.76, P = 3.3e-06, N = 1958) (0.17, 0.063, P = 0.33, N = 859)
rs34667937(G)/3:46576351 LRRC2 (0.36, 0.16, P = 7e-06, N = 1958) (0.14, 0.068, P = 0.34, N = 859)
rs35119986(C)/3:74280018 intergenic (0.13, -0.25, P = 9.4e-06, N = 1958) (0.19, -0.004, P = 0.95, N = 859)
rs1447833(C)/3:79039406* ROBO1 (0.091, -0.29, P = 6.6e-07, N = 1958) (0.015, -0.42, P = 0.037, N = 859)
rs17785887(T)/4:179536770 intergenic (0.82, -0.017, P = 2.1e-05, N = 7824) (0.84, -0.028, P = 0.67, N = 859)
rs17533525(T)/5:106779692* EFNA5 (0.15, 0.0082, P = 5e-06, N = 7824) (0.032, -0.18, P = 0.2, N = 859)
rs9312777(T)/5:11556754* CTNND2 (0.48, 0.0043, P = 4.7e-06, N = 7824) (0.64, 0.02, P = 0.67, N = 859)
rs10478509(A)/5:120529790* CTD-2020P22.1 (0.48, -0.0041, P = 1.4e-05, N = 7824) (0.65, -0.0036, P = 0.94, N = 859)
rs2695978(A)/5:165695551 intergenic (0.5, 0.004, P = 2e-05, N = 7824) (0.39, -0.084, P = 0.087, N = 859)
rs28362590(T)/5:176731452* PRELID1 (0.75, -0.18, P = 8.2e-07, N = 1958) (0.86, -0.15, P = 0.04, N = 859)
rs12517218(C)/5:2157589* intergenic (0.067, -0.26, P = 9.1e-06, N = 1958) (0.054, -0.027, P = 0.8, N = 859)
rs1330649(C)/5:26038348 intergenic (0.99, 0.59, P = 3.8e-06, N = 1958) (0.87, 0.053, P = 0.47, N = 859)
rs6452345(T)/5:26568243* intergenic (0.17, -0.0076, P = 1.4e-05, N = 7824) (0.054, 0.14, P = 0.19, N = 859)
rs12517707(A)/5:5131299* CTD-2297D10.2 (0.81, 0.0072, P = 3.7e-05, N = 7824) (0.87, 0.07, P = 0.34, N = 859)
rs2278241(A)/5:76326885* AGGF1 (0.27, -0.19, P = 1.2e-06, N = 1958) (0.078, -0.12, P = 0.2, N = 859)
rs17235037(T)/5:9013608* CTD-2215L10.1 (0.12, 0.0078, P = 1.6e-05, N = 7824) (0.035, 0.22, P = 0.1, N = 859)
rs12175103(A)/6:100706809* intergenic (0.42, 0.0048, P = 4.9e-07, N = 7824) (0.28, 0.045, P = 0.41, N = 859)
rs12660850(C)/6:139903229 intergenic (0.93, -0.011, P = 1.2e-05, N = 7824) (0.93, -0.12, P = 0.19, N = 859)
rs9477021(C)/6:16061453 intergenic (0.018, -0.024, P = 7.7e-06, N = 7824) (0.15, -0.13, P = 0.056, N = 859)
rs9456538(A)/6:160853393* SLC22A3 (0.15, -0.0082, P = 4.2e-06, N = 7824) (0.37, -0.12, P = 0.011, N = 859)
rs4960121(G)/6:5649266* FARS2 (0.75, 0.19, P = 3.6e-06, N = 1958) (0.53, -0.059, P = 0.22, N = 859)
rs6459184(T)/6:57160035 intergenic (0.52, -0.0039, P = 3.9e-05, N = 7824) (0.79, -0.064, P = 0.28, N = 859)
rs849415(A)/7:106552538 PIK3CG (0.9, -0.0078, P = 2.2e-05, N = 7824) (0.81, -0.0093, P = 0.88, N = 859)
rs10216203(T)/7:140168158* MKRN1 (0.88, 0.0078, P = 2e-05, N = 7824) (0.32, 0.035, P = 0.49, N = 859)
rs1990178(T)/7:21300265* intergenic (0.19, -0.016, P = 6.3e-06, N = 7824) (0.069, -0.048, P = 0.61, N = 859)
rs2042499(A)/7:24095366 intergenic (0.48, 0.0052, P = 4.9e-08, N = 7824) (0.2, 0.0026, P = 0.97, N = 859)
rs4720409(A)/7:41884913* intergenic (0.68, 0.0068, P = 4.9e-05, N = 7824) (0.81, 0.08, P = 0.19, N = 859)
rs6955253(T)/7:54619356 VSTM2A (0.84, -0.017, P = 2.8e-05, N = 7824) (0.73, 0.025, P = 0.64, N = 859)
rs13225353(T)/7:68441909 intergenic (0.12, 0.0077, P = 2.1e-05, N = 7824) (0.11, -0.01, P = 0.9, N = 859)
rs2521310(T)/7:89352860 intergenic (0.87, 0.009, P = 6.8e-06, N = 7824) (0.68, -0.026, P = 0.6, N = 859)
rs17198100(T)/8:103928846 KB-1507C5.2 (0.11, 0.02, P = 1.1e-05, N = 7824) (0.024, 0.18, P = 0.26, N = 859)
rs11985537(T)/8:129168086* intergenic (0.13, 0.0076, P = 3.6e-05, N = 7824) (0.086, -0.059, P = 0.48, N = 859)
rs10088988(C)/8:14112859 SGCZ (0.15, 0.0073, P = 4.5e-05, N = 7824) (0.44, -0.02, P = 0.67, N = 859)
rs71217388(AC)/8:18452739 PSD3 (0.13, 0.14, P = 6.6e-06, N = 1958) (0.16, -0.052, P = 0.43, N = 859)
rs17830054(T)/8:1892619* ARHGEF10 (0.12, -0.008, P = 1.5e-05, N = 7824) (0.041, -0.2, P = 0.099, N = 859)
rs4961420(C)/8:20731339* intergenic (0.64, 0.007, P = 3.2e-05, N = 7824) (0.69, -0.05, P = 0.32, N = 859)
rs2979688(T)/8:24814205* NEFL (0.64, 0.24, P = 3.6e-06, N = 1958) (0.3, 0.0069, P = 0.9, N = 859)
rs2543041(A)/8:39817470* IDO2 (0.12, 0.0076, P = 2.7e-05, N = 7824) (0.42, 0.014, P = 0.77, N = 859)
rs17070697(T)/8:4447662 CSMD1 (0.13, -0.0075, P = 2.9e-05, N = 7824) (0.41, 0.038, P = 0.44, N = 859)
rs10968052(T)/9:27678482* intergenic (0.12, 0.0075, P = 3.9e-05, N = 7824) (0.038, 0.065, P = 0.61, N = 859)
rs10970461(A)/9:31632171 intergenic (0.91, 0.01, P = 4.1e-05, N = 7824) (0.99, 0.11, P = 0.61, N = 859)
rs10975539(T)/9:6308729* intergenic (0.23, -0.014, P = 4e-05, N = 7824) (0.034, 0.042, P = 0.75, N = 859)
Results from Univariable Mendelian Randomization of Creatinine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 123 0.056 (-0.031- 0.14) P=0.21 6.3 39 1.53 (0- 80.3) NA NA 0.011 P=0.1
MR-Egger 123 0.015 (-0.084- 0.11) P=0.77 6.3 39 1.53 (0- 80.3) 122 0.47 0.011 P=0.1
Weighted median 123 0.03 (-0.1- 0.16) P=0.66 6.3 39 1.53 (0- 80.3) NA NA 0.011 P=0.1
Results from Univariable MRPRESSO of Creatinine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.06 0.04 1.27 0.21
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Creatinine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 71 0.081 (-0.042- 0.2) P=0.2 5.1 18 0 (0- 17.1) NA NA 0.0026 P=0.77
MR-Egger 71 0.068 (-0.095- 0.23) P=0.42 5.1 18 0 (0- 17.1) 54 0.91 0.0026 P=0.77
Weighted median 71 0.086 (-0.14- 0.31) P=0.46 5.1 18 0 (0- 17.1) NA NA 0.0026 P=0.77
Results from Univariable MRPRESSO of Creatinine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.08 0.06 1.29 0.2
beta.exposure Outlier-corrected NA NA NA NA

L-Cystathionine

Instruments Associations with L-Cystathionine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Cystathionine (Shin et al/Long et al) eGFR (CSSCD)
rs115109644(C)/1:224064269* intergenic (0.015, 0.32, P = 9e-06, N = 1943) (0.49, -0.063, P = 0.21, N = 859)
rs4649409(G)/1:232971657 RNU1-74P (0.89, -0.28, P = 7.6e-07, N = 1943) (0.3, -0.055, P = 0.3, N = 859)
rs72756259(G)/1:232986317 intergenic (0.053, -0.34, P = 3.6e-06, N = 1943) (0.012, 0.00067, P = 1, N = 859)
rs6585049(T)/10:113043378 intergenic (0.89, -0.16, P = 9.6e-06, N = 1943) (0.48, 0.071, P = 0.14, N = 859)
rs7918657(T)/10:14395828 FRMD4A (0.12, 0.24, P = 1.5e-06, N = 1943) (0.091, -0.0053, P = 0.95, N = 859)
rs2660220(T)/10:52736099 intergenic (0.86, 0.18, P = 6.3e-06, N = 1943) (0.96, 0.067, P = 0.59, N = 859)
rs4121607(C)/11:60306301 MS4A13 (0.81, -0.14, P = 7.3e-06, N = 1943) (0.63, -0.025, P = 0.61, N = 859)
rs75745817(C)/12:71938404 LGR5 (0.061, 0.36, P = 4.9e-06, N = 1943) (0.027, -0.018, P = 0.9, N = 859)
rs10048020(T)/15:39651363* RP11-624L4.1 (0.63, -0.17, P = 5.9e-07, N = 1943) (0.72, -0.062, P = 0.25, N = 859)
rs205132(A)/16:25622453 intergenic (0.14, 0.18, P = 4.7e-06, N = 1943) (0.22, -0.048, P = 0.4, N = 859)
rs8051862(C)/16:83386261 CDH13 (0.78, -0.23, P = 9e-06, N = 1943) (0.69, 0.0085, P = 0.87, N = 859)
rs517175(C)/18:11532945 intergenic (0.43, -0.15, P = 6.5e-06, N = 1943) (0.84, -0.016, P = 0.82, N = 859)
rs9964990(A)/18:62249459 intergenic (0.64, 0.18, P = 3.1e-06, N = 1943) (0.91, -0.039, P = 0.63, N = 859)
rs35170371(A)/19:33355081 SLC7A9 (0.2, 0.25, P = 2.2e-07, N = 1943) (0.29, 0.036, P = 0.5, N = 859)
rs13007863(C)/2:1048650 SNTG2 (0.27, 0.19, P = 8.3e-06, N = 1943) (0.35, -0.0045, P = 0.93, N = 859)
rs2365208(T)/2:31355071* GALNT14 (0.78, 0.23, P = 5.9e-06, N = 1943) (0.96, 0.024, P = 0.85, N = 859)
rs9984606(T)/21:47580684 SPATC1L (0.096, 0.25, P = 1e-05, N = 1943) (0.22, -0.042, P = 0.47, N = 859)
rs462790(C)/3:1610784* intergenic (0.98, 0.49, P = 7.3e-06, N = 1943) (0.98, 0.27, P = 0.099, N = 859)
rs9810573(T)/3:5451601* intergenic (0.48, 0.17, P = 3.7e-07, N = 1943) (0.14, -0.012, P = 0.86, N = 859)
rs1166047(T)/3:9898895 TTLL3 (0.74, -0.18, P = 2.7e-06, N = 1943) (0.93, 0.13, P = 0.15, N = 859)
rs16870330(T)/5:2703426 intergenic (0.013, 0.72, P = 6.5e-07, N = 1943) (0.39, -0.0033, P = 0.95, N = 859)
rs16899567(C)/5:2708588 intergenic (0.01, 0.87, P = 4.9e-06, N = 1943) (0.12, 0.057, P = 0.45, N = 859)
rs35492822(A)/6:169020658 SMOC2 (0.22, -0.2, P = 7.5e-07, N = 1943) (0.2, 0.027, P = 0.64, N = 859)
rs9774587(A)/8:107336888 OXR1 (0.23, -0.2, P = 3.1e-06, N = 1943) (0.63, 0.038, P = 0.45, N = 859)
rs7824505(A)/8:97330691* PTDSS1 (0.47, 0.15, P = 7.5e-06, N = 1943) (0.45, 0.067, P = 0.16, N = 859)
rs7026228(G)/9:110191946 RP11-363D24.1 (0.5, 0.16, P = 7.1e-06, N = 1943) (0.21, -0.023, P = 0.7, N = 859)
Results from Univariable Mendelian Randomization of L-Cystathionine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 26 0.0036 (-0.061- 0.068) P=0.91 24 32 0 (0- 31.3) NA NA -0.014 P=0.54
MR-Egger 26 0.041 (-0.1- 0.18) P=0.57 24 32 0 (0- 31.3) 17 0.86 -0.014 P=0.54
Weighted median 26 -0.0038 (-0.13- 0.12) P=0.95 24 32 0 (0- 31.3) NA NA -0.014 P=0.54
Results from Univariable MRPRESSO of L-Cystathionine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.03 0.11 0.91
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Cystathionine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 20 -0.0046 (-0.064- 0.055) P=0.88 25 25 0 (0- 6.84) NA NA -0.029 P=0.24
MR-Egger 20 0.069 (-0.077- 0.22) P=0.37 25 25 0 (0- 6.84) 8 0.98 -0.029 P=0.24
Weighted median 20 -0.0038 (-0.13- 0.12) P=0.95 25 25 0 (0- 6.84) NA NA -0.029 P=0.24
Results from Univariable MRPRESSO of L-Cystathionine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.03 -0.15 0.88
beta.exposure Outlier-corrected NA NA NA NA

Glycine

Instruments Associations with Glycine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Glycine (Shin et al/Long et al) eGFR (CSSCD)
rs964905(T)/1:101087131 intergenic (0.49, -0.01, P = 2.6e-05, N = 7824) (0.59, -0.0049, P = 0.92, N = 859)
rs8453(T)/1:115259599 CSDE1 (0.16, 0.014, P = 8.1e-06, N = 7824) (0.024, -0.091, P = 0.56, N = 859)
rs12736195(T)/1:173307901 intergenic (0.72, -0.01, P = 4.3e-05, N = 7824) (0.87, 0.085, P = 0.24, N = 859)
rs12089471(A)/1:201162411 IGFN1 (0.35, -0.011, P = 1.1e-05, N = 7824) (0.12, -0.031, P = 0.68, N = 859)
rs782791(A)/1:202998819* TMEM183A (0.7, 0.011, P = 2e-05, N = 7824) (0.64, -0.0051, P = 0.92, N = 859)
rs10754598(A)/1:237463089* RYR2 (0.38, -0.01, P = 2.5e-05, N = 7824) (0.36, 0.031, P = 0.54, N = 859)
rs12035460(T)/1:33198711 intergenic (0.028, -0.2, P = 5.1e-06, N = 1959) (0.039, -0.21, P = 0.097, N = 859)
rs12562983(T)/1:3457311 MEGF6 (0.026, -0.065, P = 2.3e-05, N = 7824) (0.015, 0.091, P = 0.65, N = 859)
rs6683669(A)/1:59041092* TACSTD2 (0.068, -0.02, P = 2.8e-05, N = 7824) (0.3, -0.14, P = 0.0063, N = 859)
rs7079730(A)/10:11392689* intergenic (0.81, -0.014, P = 1.4e-05, N = 7824) (0.96, 0.28, P = 0.019, N = 859)
rs1907218(T)/10:122970216* intergenic (0.31, -0.01, P = 4.9e-05, N = 7824) (0.43, 0.026, P = 0.6, N = 859)
rs2474711(C)/10:33441017* intergenic (0.72, -0.013, P = 9.4e-06, N = 7824) (0.95, -0.044, P = 0.68, N = 859)
rs7908297(A)/10:5251702* AKR1C4 (0.11, 0.016, P = 3.7e-05, N = 7824) (0.033, -0.34, P = 0.013, N = 859)
rs16917276(A)/10:64230835* ZNF365 (0.032, -0.031, P = 9e-06, N = 7824) (0.027, 0.3, P = 0.049, N = 859)
rs619945(A)/11:58468173 GLYAT (0.73, -0.011, P = 4.6e-05, N = 7824) (0.92, 0.081, P = 0.36, N = 859)
rs10898864(T)/11:72405450* ARAP1 (0.26, 0.013, P = 1.7e-05, N = 7824) (0.22, -0.051, P = 0.38, N = 859)
rs491847(A)/12:101349040 ANO4 (0.35, -0.011, P = 5.3e-06, N = 7824) (0.12, 0.014, P = 0.84, N = 859)
rs11111501(T)/12:103614448 intergenic (0.076, -0.021, P = 5.9e-06, N = 7824) (0.03, 0.037, P = 0.79, N = 859)
rs4761007(T)/12:127924890* intergenic (0.74, 0.016, P = 4.1e-07, N = 7824) (0.62, -0.016, P = 0.75, N = 859)
rs7980864(A)/12:133168665 intergenic (0.14, -0.25, P = 7.9e-06, N = 1959) (0.059, 0.087, P = 0.4, N = 859)
rs2189669(A)/12:1586846* ERC1 (0.68, -0.01, P = 4.3e-05, N = 7824) (0.6, -0.089, P = 0.073, N = 859)
rs274987(G)/12:20388368 intergenic (0.43, -0.18, P = 8.7e-06, N = 1959) (0.61, -0.024, P = 0.62, N = 859)
rs739706(C)/12:47482666 PCED1B (0.36, -0.33, P = 9.6e-06, N = 1959) (0.44, -0.12, P = 0.017, N = 859)
rs17120574(T)/12:65988722 RP11-230G5.2 (0.92, 0.019, P = 2.6e-05, N = 7824) (0.61, -0.072, P = 0.13, N = 859)
rs201421(T)/12:99218243* ANKS1B (0.72, 0.011, P = 1.3e-05, N = 7824) (0.63, -0.11, P = 0.029, N = 859)
rs2209634(T)/13:48142372* intergenic (0.012, -0.083, P = 4.4e-05, N = 7824) (0.38, -0.05, P = 0.34, N = 859)
rs1350361(A)/13:60250843* DIAPH3 (0.49, 0.0097, P = 4.7e-05, N = 7824) (0.19, -0.1, P = 0.11, N = 859)
rs9572629(A)/13:71622842* LINC00348 (0.37, -0.01, P = 3.7e-05, N = 7824) (0.28, 0.087, P = 0.11, N = 859)
rs4884012(T)/13:76243575* RP11-29G8.3 (0.64, -0.01, P = 4.1e-05, N = 7824) (0.65, -0.01, P = 0.83, N = 859)
rs10129340(A)/14:100932706 WDR25 (0.6, -0.01, P = 2.4e-05, N = 7824) (0.41, -0.031, P = 0.52, N = 859)
rs268817(A)/14:58029965* SLC35F4 (0.27, 0.013, P = 2.1e-05, N = 7824) (0.047, 0.2, P = 0.078, N = 859)
rs3890482(A)/15:65840645 PTPLAD1 (0.74, 0.59, P = 7.3e-06, N = 1959) (0.31, -0.024, P = 0.65, N = 859)
rs718663(A)/15:67412596 SMAD3 (0.93, -0.022, P = 1.6e-05, N = 7824) (0.91, 0.037, P = 0.67, N = 859)
rs11857350(A)/15:88201409* RP11-648K4.2 (0.81, 0.015, P = 2e-05, N = 7824) (0.96, -0.16, P = 0.16, N = 859)
rs1143115(T)/15:93452297* CHD2 (0.53, -0.017, P = 3.5e-05, N = 7824) (0.59, -0.054, P = 0.25, N = 859)
rs4786584(T)/16:5097593 C16orf89 (0.14, 0.59, P = 1.8e-06, N = 1959) (0.24, -0.0023, P = 0.97, N = 859)
rs804895(T)/16:81099713* C16orf46 (0.078, -0.024, P = 8.4e-07, N = 7824) (0.47, 0.03, P = 0.52, N = 859)
rs8082170(T)/17:62395382 intergenic (0.18, 0.015, P = 1.1e-06, N = 7824) (0.3, 0.0066, P = 0.9, N = 859)
rs17800159(T)/18:28720147 DSC1 (0.13, 0.015, P = 3.6e-05, N = 7824) (0.037, -0.15, P = 0.22, N = 859)
rs9948977(C)/18:38610959* intergenic (0.5, -0.01, P = 2.2e-05, N = 7824) (0.61, -0.051, P = 0.32, N = 859)
rs7243793(G)/18:3862654 DLGAP1 (0.39, 0.32, P = 4.8e-06, N = 1959) (0.78, 0.048, P = 0.41, N = 859)
rs80004741(T)/19:48299916 TPRX1 (0.11, 1.1, P = 6.5e-06, N = 1959) (0.024, -0.076, P = 0.63, N = 859)
rs6738001(A)/2:10660417 intergenic (0.3, 0.011, P = 1.8e-05, N = 7824) (0.39, 0.022, P = 0.66, N = 859)
rs10186202(C)/2:127555929 intergenic (0.56, -0.0099, P = 4.4e-05, N = 7824) (0.43, -0.016, P = 0.75, N = 859)
rs7608258(A)/2:142850098* LRP1B (0.32, -0.011, P = 1e-05, N = 7824) (0.37, 0.0021, P = 0.97, N = 859)
rs7582822(A)/2:172034918 TLK1 (0.39, 0.011, P = 3.8e-06, N = 7824) (0.75, 0.015, P = 0.79, N = 859)
rs6433432(T)/2:174579886 intergenic (0.021, 0.039, P = 1.1e-05, N = 7824) (0.22, 0.017, P = 0.77, N = 859)
rs111251927(TTTTA)/2:211351706 CPS1 (0.22, -0.18, P = 1.5e-06, N = 1959) (0.064, 0.083, P = 0.4, N = 859)
rs2007748(T)/2:211357642 CPS1 (0.53, 0.011, P = 1.9e-06, N = 7824) (0.2, 0.00063, P = 0.99, N = 859)
rs6714124(T)/2:211436065* CPS1 (0.5, -0.017, P = 3.6e-12, N = 7824) (0.57, 0.024, P = 0.61, N = 859)
rs12468557(T)/2:211495587* CPS1 (0.38, -0.02, P = 1.7e-16, N = 7824) (0.19, 0.093, P = 0.13, N = 859)
rs715(T)/2:211543055* CPS1 (0.71, -0.076, P = 1.6e-147, N = 7824) (0.81, -0.061, P = 0.33, N = 859)
rs13386028(A)/2:211547400* CPS1 (0.38, -0.038, P = 3.6e-56, N = 7824) (0.36, -0.12, P = 0.02, N = 859)
rs10164524(A)/2:211664333* intergenic (0.68, 0.03, P = 1.1e-33, N = 7824) (0.83, 0.044, P = 0.5, N = 859)
rs1016403(A)/2:211704356* intergenic (0.86, 0.029, P = 4.2e-14, N = 7824) (0.93, -0.071, P = 0.46, N = 859)
rs13394054(A)/2:211742818* intergenic (0.39, -0.029, P = 1.7e-33, N = 7824) (0.63, -0.064, P = 0.2, N = 859)
rs4310999(A)/2:211750298* intergenic (0.25, 0.035, P = 3e-31, N = 7824) (0.083, 0.077, P = 0.37, N = 859)
rs6720902(T)/2:212094151 intergenic (0.59, -0.0099, P = 4.6e-05, N = 7824) (0.79, -0.012, P = 0.84, N = 859)
rs62141397(G)/2:80246161 CTNNA2 (0.19, 0.18, P = 2.7e-06, N = 1959) (0.054, -0.15, P = 0.16, N = 859)
rs4619658(C)/2:98863523* VWA3B (0.79, 0.23, P = 9.1e-06, N = 1959) (0.87, 0.093, P = 0.2, N = 859)
rs6136611(C)/20:19057513 intergenic (0.036, 0.63, P = 7.4e-06, N = 1959) (0.18, -0.038, P = 0.54, N = 859)
rs4810122(A)/20:56743597 intergenic (0.45, 0.01, P = 3.5e-05, N = 7824) (0.3, -0.013, P = 0.81, N = 859)
rs11578(T)/20:57253275* STX16 (0.29, 0.014, P = 1.9e-07, N = 7824) (0.18, -0.0015, P = 0.98, N = 859)
rs2825016(A)/21:20081605 AL109763.2 (0.32, 0.01, P = 3.1e-05, N = 7824) (0.3, 4.4e-05, P = 1, N = 859)
rs1571724(A)/21:42148836* DSCAM (0.83, 0.014, P = 2.3e-05, N = 7824) (0.85, -0.033, P = 0.63, N = 859)
rs12165565(A)/22:26226630 MYO18B (0.016, 0.21, P = 3.1e-06, N = 1959) (0.047, -0.071, P = 0.54, N = 859)
rs4494904(T)/3:101835064* ZPLD1 (0.4, -0.011, P = 1.5e-05, N = 7824) (0.17, -0.1, P = 0.11, N = 859)
rs1992854(T)/3:125909606* ALDH1L1-AS2 (0.37, -0.011, P = 7e-06, N = 7824) (0.36, -0.073, P = 0.14, N = 859)
rs12496373(A)/3:148497051* intergenic (0.73, -0.011, P = 2.3e-05, N = 7824) (0.54, -0.037, P = 0.45, N = 859)
rs7613813(A)/3:149429485* WWTR1 (0.33, -0.01, P = 2.7e-05, N = 7824) (0.43, 0.0049, P = 0.92, N = 859)
rs9823316(A)/3:7999351 LMCD1-AS1 (0.09, 0.018, P = 1.1e-05, N = 7824) (0.16, 0.06, P = 0.36, N = 859)
rs11942622(T)/4:12360318* intergenic (0.98, 0.071, P = 2.7e-06, N = 7824) (0.78, -0.042, P = 0.47, N = 859)
rs6836137(A)/4:145250822 intergenic (0.014, -0.079, P = 4.8e-06, N = 7824) (0.016, -0.28, P = 0.15, N = 859)
rs4698310(T)/4:15083363 RP11-665G4.1 (0.42, -0.17, P = 2.7e-06, N = 1959) (0.7, 0.058, P = 0.28, N = 859)
rs9998572(T)/4:170687567 intergenic (0.033, -0.049, P = 2.7e-05, N = 7824) (0.16, -0.08, P = 0.23, N = 859)
rs3904756(C)/4:19616531 RP11-608O21.1 (0.17, 0.16, P = 4.3e-06, N = 1959) (0.079, 0.0018, P = 0.98, N = 859)
rs9992408(A)/4:76265330 RP11-542G1.1 (0.077, -0.019, P = 4e-05, N = 7824) (0.066, -0.12, P = 0.23, N = 859)
rs12152753(A)/5:111443094* intergenic (0.32, 0.01, P = 2.9e-05, N = 7824) (0.083, -0.12, P = 0.17, N = 859)
rs2560698(T)/5:115388091 ARL14EPL (0.85, 0.016, P = 1.9e-05, N = 7824) (0.65, -0.04, P = 0.44, N = 859)
rs7709785(T)/5:115406397 intergenic (0.15, -0.018, P = 2e-06, N = 7824) (0.26, -0.016, P = 0.76, N = 859)
rs329319(A)/5:133906609* JADE2 (0.43, 0.013, P = 6.5e-07, N = 7824) (0.52, -0.037, P = 0.44, N = 859)
rs13181561(A)/5:138850905* TMEM173 (0.74, 0.012, P = 4.1e-05, N = 7824) (0.41, -0.12, P = 0.012, N = 859)
rs1423029(A)/5:145930544* intergenic (0.53, -0.01, P = 2.6e-05, N = 7824) (0.5, 0.051, P = 0.3, N = 859)
rs4437350(T)/5:34645265* intergenic (0.16, 0.39, P = 6.4e-06, N = 1959) (0.037, -0.00099, P = 0.99, N = 859)
rs6897751(G)/5:79113505 CTC-431G16.2 (0.057, 0.26, P = 9.3e-06, N = 1959) (0.26, 0.011, P = 0.84, N = 859)
rs268538(T)/5:9458650 SEMA5A (0.021, -0.064, P = 1.5e-05, N = 7824) (0.091, -0.018, P = 0.84, N = 859)
rs160508(A)/5:9588764 intergenic (0.88, 0.017, P = 1.9e-05, N = 7824) (0.96, -0.076, P = 0.55, N = 859)
rs583776(T)/6:10466171* intergenic (0.62, -0.019, P = 8.2e-06, N = 7824) (0.64, 0.036, P = 0.47, N = 859)
rs11152896(C)/6:105997676 intergenic (0.92, 0.022, P = 1.2e-05, N = 7824) (0.73, 0.017, P = 0.75, N = 859)
rs9483617(T)/6:134129708 RP3-323P13.2 (0.032, -0.051, P = 4.6e-05, N = 7824) (0.15, 0.021, P = 0.76, N = 859)
rs229914(A)/6:134323928 SLC2A12 (0.58, -0.011, P = 2.4e-06, N = 7824) (0.49, -0.062, P = 0.2, N = 859)
rs13203202(T)/6:25582771 LRRC16A (0.58, 0.011, P = 9.3e-06, N = 7824) (0.48, -0.0018, P = 0.97, N = 859)
rs9328361(T)/6:6400475* LY86-AS1 (0.14, -0.014, P = 3.5e-05, N = 7824) (0.14, -0.021, P = 0.76, N = 859)
rs1125083(T)/6:73572090* KCNQ5 (0.8, -0.013, P = 3.7e-05, N = 7824) (0.84, 0.049, P = 0.46, N = 859)
rs12532734(A)/7:107472382* intergenic (0.2, -0.013, P = 3.5e-05, N = 7824) (0.12, 0.048, P = 0.53, N = 859)
rs5009270(A)/7:112159178* NPM1P14 (0.31, 0.011, P = 1.7e-05, N = 7824) (0.5, 0.1, P = 0.036, N = 859)
rs7789056(A)/7:112908269 intergenic (0.56, 0.01, P = 3.8e-05, N = 7824) (0.52, -0.0018, P = 0.97, N = 859)
rs12534184(A)/7:123651077* RP4-630C24.3 (0.11, -0.016, P = 4e-05, N = 7824) (0.19, -0.075, P = 0.21, N = 859)
rs9655907(A)/7:137817625* intergenic (0.97, 0.05, P = 3.1e-05, N = 7824) (0.79, -0.0076, P = 0.9, N = 859)
rs17557000(A)/7:151707893 GALNTL5 (0.63, -0.01, P = 3.3e-05, N = 7824) (0.76, -0.092, P = 0.1, N = 859)
rs6464427(T)/7:154147779 DPP6 (0.19, 0.013, P = 4.3e-05, N = 7824) (0.48, -0.1, P = 0.03, N = 859)
rs6951820(A)/7:154381783* DPP6 (0.43, 0.011, P = 4.8e-06, N = 7824) (0.23, 0.076, P = 0.18, N = 859)
rs117039120(T)/7:20607573 intergenic (0.17, 0.15, P = 2.1e-07, N = 1959) (0.038, -0.23, P = 0.056, N = 859)
rs6974377(C)/7:21397405 intergenic (0.32, -0.37, P = 1.7e-06, N = 1959) (0.24, 0.026, P = 0.66, N = 859)
rs10275982(A)/7:27953981 JAZF1 (0.35, -0.01, P = 2.2e-05, N = 7824) (0.17, -0.14, P = 0.038, N = 859)
rs1123227(A)/7:42496495* intergenic (0.76, 0.017, P = 9.8e-06, N = 7824) (0.84, 0.11, P = 0.12, N = 859)
rs983498(C)/7:53113752* intergenic (0.71, -0.02, P = 8e-06, N = 7824) (0.78, -0.018, P = 0.75, N = 859)
rs3211913(G)/7:80294604 CD36 (0.022, -0.36, P = 5.1e-06, N = 1959) (0.33, -0.027, P = 0.61, N = 859)
rs17635249(C)/8:49806968 intergenic (0.36, 0.01, P = 3.9e-05, N = 7824) (0.26, 0.035, P = 0.53, N = 859)
rs182914(T)/8:50060960* intergenic (0.47, -0.0098, P = 4.6e-05, N = 7824) (0.32, -0.079, P = 0.13, N = 859)
rs17370395(A)/9:105976900 RP11-341A22.2 (0.93, 0.047, P = 2e-05, N = 7824) (0.92, 0.018, P = 0.84, N = 859)
rs11573691(T)/9:110081653 RAD23B (0.094, -0.28, P = 5.4e-06, N = 1959) (0.015, -0.088, P = 0.65, N = 859)
rs12349613(T)/9:117607806* RP11-78H18.2 (0.055, 0.034, P = 5.6e-06, N = 7824) (0.18, -0.056, P = 0.36, N = 859)
rs3012739(A)/9:134654306* EIF4A1P3 (0.48, 0.012, P = 2.1e-06, N = 7824) (0.22, -0.0098, P = 0.86, N = 859)
rs4240706(A)/9:137669555 COL5A1 (0.015, -0.1, P = 1.9e-05, N = 7824) (0.25, -0.024, P = 0.67, N = 859)
rs10964319(T)/9:1994871* intergenic (0.097, -0.017, P = 4.7e-05, N = 7824) (0.21, -0.008, P = 0.9, N = 859)
rs10971687(T)/9:33761112* PRSS3 (0.37, -0.01, P = 1.8e-05, N = 7824) (0.13, 0.21, P = 0.0034, N = 859)
rs2297442(T)/9:6540540 GLDC (0.7, 0.011, P = 2.9e-05, N = 7824) (0.83, 0.041, P = 0.53, N = 859)
rs952045(T)/9:73161881 TRPM3 (0.95, 0.025, P = 7.3e-06, N = 7824) (0.77, -0.046, P = 0.42, N = 859)
Results from Univariable Mendelian Randomization of Glycine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 119 0.014 (-0.072- 0.1) P=0.75 15 80 0.00117 (0- 97.3) NA NA 0.0028 P=0.69
MR-Egger 119 0.0051 (-0.091- 0.1) P=0.92 15 80 0.00117 (0- 97.3) 149 0.024 0.0028 P=0.69
Weighted median 119 -0.027 (-0.13- 0.077) P=0.61 15 80 0.00117 (0- 97.3) NA NA 0.0028 P=0.69
Results from Univariable MRPRESSO of Glycine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.01 0.04 0.32 0.75
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Glycine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 61 0.003 (-0.068- 0.074) P=0.93 27 73 0 (0- 45) NA NA 0.0054 P=0.57
MR-Egger 61 -0.011 (-0.1- 0.081) P=0.81 27 73 0 (0- 45) 49 0.82 0.0054 P=0.57
Weighted median 61 -0.03 (-0.13- 0.072) P=0.56 27 73 0 (0- 45) NA NA 0.0054 P=0.57
Results from Univariable MRPRESSO of Glycine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.04 0.08 0.93
beta.exposure Outlier-corrected NA NA NA NA

Hippuric acid

Instruments Associations with Hippuric acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Hippuric acid (Shin et al/Long et al) eGFR (CSSCD)
rs520229(T)/1:78876209 PTGFR (0.69, -0.15, P = 3.4e-06, N = 1956) (0.58, -0.021, P = 0.67, N = 859)
rs12410147(T)/1:94289120 BCAR3 (0.071, 0.23, P = 8e-06, N = 1956) (0.16, 0.083, P = 0.22, N = 859)
rs10786630(C)/10:103075639 RP11-107I14.2 (0.65, 0.19, P = 7.8e-07, N = 1956) (0.28, 0.12, P = 0.023, N = 859)
rs282692(C)/10:60655066 intergenic (0.78, -0.19, P = 9e-06, N = 1956) (0.4, 0.017, P = 0.73, N = 859)
rs9518260(C)/13:101632306 NALCN-AS1 (0.27, -0.16, P = 9.9e-07, N = 1956) (0.097, -0.019, P = 0.81, N = 859)
rs420176(C)/13:111216902 RAB20 (0.93, 0.34, P = 4.2e-06, N = 1956) (0.75, -0.051, P = 0.37, N = 859)
rs2045930(G)/15:74100160 intergenic (0.46, 0.15, P = 8e-07, N = 1956) (0.098, -0.069, P = 0.39, N = 859)
rs4553581(C)/15:74194348 intergenic (0.56, 0.17, P = 3e-08, N = 1956) (0.33, 0.037, P = 0.45, N = 859)
rs12935540(T)/16:48586557 N4BP1 (0.29, -0.16, P = 3.4e-06, N = 1956) (0.41, -0.013, P = 0.79, N = 859)
rs3095573(G)/16:53377003* intergenic (0.35, 0.15, P = 9.2e-06, N = 1956) (0.11, -0.041, P = 0.59, N = 859)
rs10195231(G)/2:121152012 intergenic (0.48, 0.14, P = 5.2e-06, N = 1956) (0.88, 0.09, P = 0.21, N = 859)
rs6053232(G)/20:5241396 intergenic (0.72, -0.19, P = 3.4e-06, N = 1956) (0.88, 0.14, P = 0.062, N = 859)
rs77077232(A)/3:125463283 OR7E97P (0.039, -0.37, P = 4e-06, N = 1956) (0.38, 0.0089, P = 0.85, N = 859)
rs745168(A)/3:194325010 TMEM44 (0.32, 0.09, P = 8.9e-06, N = 1956) (0.29, 0.0077, P = 0.89, N = 859)
rs1452177(T)/3:83496775* intergenic (0.5, -0.17, P = 1.9e-06, N = 1956) (0.49, 0.074, P = 0.12, N = 859)
rs11730547(G)/4:117903947 intergenic (0.1, -0.32, P = 1.8e-07, N = 1956) (0.16, 0.11, P = 0.097, N = 859)
rs7682799(C)/4:118010613* TRAM1L1 (0.11, -0.34, P = 2.6e-08, N = 1956) (0.18, 0.011, P = 0.87, N = 859)
rs11791193(A)/9:117084020 ORM1 (0.14, 0.26, P = 6.6e-07, N = 1956) (0.024, -0.046, P = 0.77, N = 859)
rs7029058(T)/9:84233764 TLE1 (0.36, -0.13, P = 4.1e-06, N = 1956) (0.61, 0.063, P = 0.21, N = 859)
Results from Univariable Mendelian Randomization of Hippuric acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 19 -0.05 (-0.18- 0.079) P=0.45 25 24 6.24 (0- 66.7) NA NA 0.019 P=0.64
MR-Egger 19 -0.13 (-0.48- 0.22) P=0.48 25 24 6.24 (0- 66.7) 20 0.25 0.019 P=0.64
Weighted median 19 -0.03 (-0.21- 0.15) P=0.75 25 24 6.24 (0- 66.7) NA NA 0.019 P=0.64
Results from Univariable MRPRESSO of Hippuric acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.07 -0.76 0.46
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Hippuric acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 16 -0.027 (-0.17- 0.12) P=0.72 23 19 20 (0- 71.8) NA NA 0.037 P=0.41
MR-Egger 16 -0.18 (-0.58- 0.21) P=0.37 23 19 20 (0- 71.8) 18 0.22 0.037 P=0.41
Weighted median 16 -0.046 (-0.25- 0.16) P=0.66 23 19 20 (0- 71.8) NA NA 0.037 P=0.41
Results from Univariable MRPRESSO of Hippuric acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.08 -0.36 0.73
beta.exposure Outlier-corrected NA NA NA NA

Indoxyl sulfate

Instruments Associations with Indoxyl sulfate & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Indoxyl sulfate (Shin et al/Long et al) eGFR (CSSCD)
rs6679229(G)/1:15914078* AGMAT (0.3, -0.18, P = 2.1e-06, N = 1954) (0.27, -0.0022, P = 0.97, N = 859)
rs4587548(C)/1:195834979* intergenic (0.62, 0.015, P = 2.5e-05, N = 7339) (0.16, 0.05, P = 0.46, N = 859)
rs4288539(A)/1:25282993* RUNX3 (0.61, -0.015, P = 2.1e-05, N = 7339) (0.89, 0.096, P = 0.23, N = 859)
rs1564485(A)/1:53621628* intergenic (0.48, 0.016, P = 7.8e-06, N = 7339) (0.56, -0.0031, P = 0.95, N = 859)
rs7095620(A)/10:114448218* VTI1A (0.31, -0.016, P = 2.7e-05, N = 7339) (0.68, 0.05, P = 0.35, N = 859)
rs12217409(A)/10:129707769 PTPRE (0.14, -0.27, P = 3e-06, N = 1954) (0.31, 0.085, P = 0.1, N = 859)
rs7100757(C)/10:73325757 CDH23 (0.46, 0.15, P = 4.6e-06, N = 1954) (0.62, -0.027, P = 0.58, N = 859)
rs4937006(C)/11:125252738 PKNOX2 (0.075, 0.036, P = 3.2e-05, N = 7339) (0.17, -0.071, P = 0.27, N = 859)
rs527140(A)/11:57500134* TMX2 (0.75, -0.033, P = 6.8e-06, N = 1758) (0.77, -0.055, P = 0.33, N = 859)
rs1283170(A)/12:52423179 NR4A1 (0.3, -0.03, P = 2.7e-05, N = 1758) (0.32, -0.055, P = 0.3, N = 859)
rs7327909(A)/13:100505367* CLYBL (0.39, 0.016, P = 1.3e-05, N = 7339) (0.27, -0.057, P = 0.31, N = 859)
rs9508849(A)/13:20261939* PSPC1 (0.95, 0.076, P = 3.4e-05, N = 1758) (0.71, 0.031, P = 0.57, N = 859)
rs4363758(T)/13:77386392* intergenic (0.23, 0.018, P = 2.3e-05, N = 7339) (0.2, 0.0031, P = 0.96, N = 859)
rs7161167(A)/14:29740046 RP11-562L8.1 (0.051, -0.036, P = 1.6e-05, N = 7339) (0.2, 0.096, P = 0.12, N = 859)
rs2765904(T)/14:85289193 intergenic (0.51, -0.015, P = 4e-05, N = 7339) (0.19, 0.012, P = 0.84, N = 859)
rs12599018(C)/16:6085186 RBFOX1 (0.19, -0.021, P = 2.6e-05, N = 7339) (0.29, -0.038, P = 0.48, N = 859)
rs12597663(A)/16:66396875* CDH5 (0.63, 0.015, P = 4.4e-05, N = 7339) (0.42, -0.012, P = 0.81, N = 859)
rs3907371(T)/18:69684916 intergenic (0.65, -0.03, P = 1.1e-05, N = 1758) (0.62, -0.038, P = 0.46, N = 859)
rs7937(T)/19:41302706* EGLN2 (0.56, -0.015, P = 1.9e-05, N = 7339) (0.31, -0.028, P = 0.61, N = 859)
rs373996356(G)/19:429599 SHC2 (0.011, -0.56, P = 7.5e-06, N = 1954) (0.061, -0.05, P = 0.63, N = 859)
rs17043547(A)/2:115539056 DPP10 (0.012, -0.079, P = 4.9e-06, N = 7339) (0.036, -0.011, P = 0.93, N = 859)
rs1179644(A)/2:217796770* AC007563.5 (0.93, 0.029, P = 2.6e-05, N = 7339) (0.49, 0.012, P = 0.8, N = 859)
rs7261614(T)/20:17604260* RRBP1 (0.24, 0.034, P = 1.3e-05, N = 1758) (0.65, -0.029, P = 0.57, N = 859)
rs12480161(T)/20:40389664* intergenic (0.75, -0.032, P = 4.1e-05, N = 1758) (0.83, -0.018, P = 0.79, N = 859)
rs7262150(C)/20:62354494 ZGPAT (0.21, 0.24, P = 4.8e-06, N = 1954) (0.078, 0.033, P = 0.72, N = 859)
rs9863394(T)/3:125456532* OR7E53P (0.059, 0.037, P = 2.5e-05, N = 7339) (0.41, -0.0057, P = 0.91, N = 859)
rs7631707(A)/3:20300268* intergenic (0.56, 0.015, P = 2.9e-05, N = 7339) (0.59, -0.089, P = 0.077, N = 859)
rs17024808(T)/4:134386587* intergenic (0.63, 0.015, P = 4.2e-05, N = 7339) (0.4, 0.066, P = 0.18, N = 859)
rs10031835(T)/4:136087584* intergenic (0.7, -0.034, P = 5.8e-06, N = 1758) (0.9, 0.068, P = 0.4, N = 859)
rs295224(T)/4:161227411* intergenic (0.41, -0.017, P = 2.4e-05, N = 7339) (0.26, -0.015, P = 0.79, N = 859)
rs77431462(T)/4:174899979 RP11-161D15.3 (0.74, -0.12, P = 8.6e-06, N = 1954) (0.55, 0.0067, P = 0.89, N = 859)
rs13145712(T)/4:62041029* intergenic (0.73, -0.034, P = 4.1e-05, N = 1758) (0.89, -0.12, P = 0.14, N = 859)
rs2090189(T)/4:64337600* RP11-12K22.1 (0.4, 0.015, P = 1.6e-05, N = 7339) (0.36, 0.093, P = 0.058, N = 859)
rs698172(A)/5:127154927 CTC-228N24.1 (0.42, -0.015, P = 3.4e-05, N = 7339) (0.15, 0.018, P = 0.79, N = 859)
rs1039438(A)/5:156476770* HAVCR1 (0.28, -0.019, P = 1e-05, N = 7339) (0.15, -0.011, P = 0.87, N = 859)
rs13361283(T)/5:169722546 LCP2 (0.92, 0.057, P = 1.8e-05, N = 1758) (0.9, -0.091, P = 0.26, N = 859)
rs2927892(A)/6:120659453 intergenic (0.27, -0.018, P = 3.8e-05, N = 7339) (0.23, 0.012, P = 0.83, N = 859)
rs9489956(T)/6:120781346* intergenic (0.78, 0.04, P = 5.3e-07, N = 1758) (0.75, -0.0097, P = 0.86, N = 859)
rs11758810(T)/6:155418671 TIAM2 (0.38, 0.16, P = 1.9e-06, N = 1954) (0.26, 0.021, P = 0.72, N = 859)
rs9379897(T)/6:26601526* ABT1 (0.87, -0.026, P = 2e-06, N = 7339) (0.86, 0.021, P = 0.77, N = 859)
rs3847067(A)/7:100500615* RN7SL549P (0.29, -0.032, P = 6.7e-06, N = 1758) (0.096, -0.05, P = 0.53, N = 859)
rs2273933(T)/9:14313712* NFIB (0.1, 0.026, P = 3.7e-05, N = 7339) (0.56, 0.0099, P = 0.84, N = 859)
rs7855409(T)/9:24296518 intergenic (0.01, -0.58, P = 8.5e-06, N = 1954) (0.022, -0.23, P = 0.17, N = 859)
rs943628(T)/9:293360* DOCK8 (0.26, 0.018, P = 4.2e-05, N = 7339) (0.34, 0.039, P = 0.45, N = 859)
rs7858948(A)/9:89621759* CDC20P1 (0.011, -0.13, P = 3.5e-05, N = 1758) (0.3, -0.091, P = 0.082, N = 859)
Results from Univariable Mendelian Randomization of Indoxyl sulfate & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 45 0.032 (-0.12- 0.19) P=0.68 4.8 10 2.69 (0- 30.2) NA NA 0.0024 P=0.82
MR-Egger 45 0.018 (-0.2- 0.23) P=0.87 4.8 10 2.69 (0- 30.2) 34 0.83 0.0024 P=0.82
Weighted median 45 0.052 (-0.22- 0.33) P=0.71 4.8 10 2.69 (0- 30.2) NA NA 0.0024 P=0.82
Results from Univariable MRPRESSO of Indoxyl sulfate & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.03 0.08 0.41 0.68
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Indoxyl sulfate & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 17 -0.022 (-0.19- 0.15) P=0.81 9.8 8.2 5.28 (0- 69.7) NA NA -0.013 P=0.53
MR-Egger 17 0.034 (-0.22- 0.29) P=0.8 9.8 8.2 5.28 (0- 69.7) 12 0.67 -0.013 P=0.53
Weighted median 17 0.027 (-0.27- 0.32) P=0.86 9.8 8.2 5.28 (0- 69.7) NA NA -0.013 P=0.53
Results from Univariable MRPRESSO of Indoxyl sulfate & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.02 0.09 -0.25 0.81
beta.exposure Outlier-corrected NA NA NA NA

Methylmalonylcarnitine

Instruments Associations with Methylmalonyl carnitine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Methylmalonyl carnitine (Shin et al/Long et al) eGFR (CSSCD)
rs10999344(A)/10:53525932* PRKG1 (0.12, 0.22, P = 9.4e-06, N = 1818) (0.12, 0.012, P = 0.87, N = 859)
rs1842830(T)/11:7863201* RP11-35J10.5 (0.99, -0.6, P = 6.4e-07, N = 1818) (0.88, -0.046, P = 0.52, N = 859)
rs578157537(ATTTTTTT)/12:104366864 TDG (0.039, -0.39, P = 3.4e-06, N = 1818) (0.76, 0.068, P = 0.24, N = 859)
rs880118(C)/13:112023039* intergenic (0.99, -0.47, P = 1.2e-06, N = 1818) (0.7, 0.016, P = 0.77, N = 859)
rs1885076(G)/14:27043304 NOVA1 (0.62, -0.13, P = 1.4e-06, N = 1818) (0.15, -0.17, P = 0.013, N = 859)
rs11890(A)/16:1820992* NME3 (0.77, -0.18, P = 8.3e-07, N = 1818) (0.84, -0.041, P = 0.54, N = 859)
rs2967147(C)/16:57849280* CTD-2600O9.1 (0.079, -0.31, P = 3.6e-06, N = 1818) (0.26, -0.088, P = 0.097, N = 859)
rs56720646(A)/18:49036947 RP11-267C16.1 (0.06, 0.29, P = 2.7e-06, N = 1818) (0.12, -0.01, P = 0.89, N = 859)
rs200472465(C)/2:11956875* LPIN1 (0.014, 0.49, P = 5.8e-06, N = 1818) (0.074, -0.098, P = 0.29, N = 859)
rs140740345(CA)/2:198092325 ANKRD44 (0.22, -0.22, P = 4.9e-06, N = 1818) (0.82, 0.073, P = 0.25, N = 859)
rs112638583(T)/2:23341246 AC016768.1 (0.016, 0.65, P = 7.4e-06, N = 1818) (0.022, 0.0055, P = 0.97, N = 859)
rs1075726(C)/2:23412686* AC016768.1 (0.067, 0.35, P = 4.7e-06, N = 1818) (0.09, 0.12, P = 0.15, N = 859)
rs1569910(G)/20:54377395* intergenic (0.033, -0.37, P = 9.3e-06, N = 1818) (0.063, -0.17, P = 0.083, N = 859)
rs4810141(T)/20:57209899 MGC4294 (0.58, 0.15, P = 6.2e-06, N = 1818) (0.41, 0.021, P = 0.67, N = 859)
rs10077410(A)/5:122450771* PRDM6 (0.14, 0.23, P = 6.7e-06, N = 1818) (0.14, 0.019, P = 0.79, N = 859)
rs3095825(A)/5:31440389* DROSHA (0.82, -0.22, P = 4.4e-06, N = 1818) (0.92, 0.092, P = 0.31, N = 859)
rs59448538(G)/6:150631830 intergenic (0.26, -0.2, P = 2.9e-07, N = 1818) (0.32, -0.072, P = 0.15, N = 859)
rs7810641(C)/7:146979044 CNTNAP2 (0.72, -0.17, P = 6.7e-06, N = 1818) (0.96, -0.14, P = 0.25, N = 859)
rs4743171(T)/9:100908135 CORO2A (0.27, -0.19, P = 6.5e-06, N = 1818) (0.31, 0.018, P = 0.74, N = 859)
rs79410245(C)/9:7666483 intergenic (0.015, 0.59, P = 7.9e-06, N = 1818) (0.069, -0.17, P = 0.075, N = 859)
Results from Univariable Mendelian Randomization of Methylmalonyl carnitine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 20 0.02 (-0.09- 0.13) P=0.72 21 23 21.5 (0- 77.6) NA NA 0.07 P=0.095
MR-Egger 20 -0.18 (-0.42- 0.066) P=0.17 21 23 21.5 (0- 77.6) 23 0.21 0.07 P=0.095
Weighted median 20 -0.01 (-0.15- 0.13) P=0.89 21 23 21.5 (0- 77.6) NA NA 0.07 P=0.095
Results from Univariable MRPRESSO of Methylmalonyl carnitine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.02 0.06 0.35 0.73
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Methylmalonyl carnitine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 10 -0.065 (-0.26- 0.13) P=0.51 22 12 24.1 (0- 91.3) NA NA 0.12 P=0.04
MR-Egger 10 -0.45 (-0.8- -0.11) P=0.034 22 12 24.1 (0- 91.3) 8.6 0.38 0.12 P=0.04
Weighted median 10 -0.13 (-0.35- 0.093) P=0.26 22 12 24.1 (0- 91.3) NA NA 0.12 P=0.04
Results from Univariable MRPRESSO of Methylmalonyl carnitine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.07 0.1 -0.66 0.53
beta.exposure Outlier-corrected NA NA NA NA

myo-Inositol

Instruments Associations with myo-Inositol & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region myo-Inositol (Shin et al/Long et al) eGFR (CSSCD)
rs10875336(T)/1:101241384 intergenic (0.61, -0.0073, P = 2.4e-05, N = 7824) (0.55, -0.14, P = 0.0037, N = 859)
rs856084(T)/1:158915141* PYHIN1 (0.72, 0.0078, P = 1e-05, N = 7824) (0.92, 0.023, P = 0.8, N = 859)
rs7544659(A)/1:175647041* TNR (0.4, 0.0089, P = 3.1e-07, N = 7824) (0.47, 0.031, P = 0.52, N = 859)
rs7556049(C)/1:200138774 NR5A2 (0.12, 0.22, P = 5.2e-06, N = 1951) (0.39, -0.05, P = 0.3, N = 859)
rs10735491(A)/1:217113278* ESRRG (0.45, 0.0072, P = 3.9e-05, N = 7824) (0.18, 0.037, P = 0.55, N = 859)
rs12744888(A)/1:229336778 intergenic (0.93, -0.02, P = 1.4e-05, N = 7824) (0.99, -0.055, P = 0.8, N = 859)
rs4659612(A)/1:236033290* LYST (0.74, 0.017, P = 5.9e-06, N = 7824) (0.72, 0.11, P = 0.045, N = 859)
rs7541937(T)/1:35341982* DLGAP3 (0.46, 0.0079, P = 2.2e-05, N = 7824) (0.53, -0.05, P = 0.31, N = 859)
rs12146051(C)/1:46742952 RAD54L (0.31, -0.0074, P = 2.8e-05, N = 7824) (0.059, 0.062, P = 0.54, N = 859)
rs12077102(C)/1:60183404 FGGY (0.012, 0.066, P = 1.9e-05, N = 7824) (0.14, -0.015, P = 0.83, N = 859)
rs6584573(C)/10:105570406* SH3PXD2A (0.016, 0.032, P = 2.7e-05, N = 7824) (0.13, -0.11, P = 0.14, N = 859)
rs11192466(A)/10:107278956* intergenic (0.013, 0.069, P = 8.3e-06, N = 7824) (0.12, -0.084, P = 0.25, N = 859)
rs11010733(A)/10:19912562* MALRD1 (0.025, 0.046, P = 4.1e-05, N = 7824) (0.19, -0.02, P = 0.75, N = 859)
rs3004261(A)/10:43491592* MIR5100 (0.42, 0.0082, P = 1.8e-06, N = 7824) (0.33, -0.0069, P = 0.9, N = 859)
rs10996699(A)/10:53063382 PRKG1 (0.77, -0.013, P = 4.4e-05, N = 7824) (0.94, 0.071, P = 0.47, N = 859)
rs7071294(G)/10:53396926 PRKG1 (0.23, -0.25, P = 2.9e-06, N = 1951) (0.19, 0.027, P = 0.66, N = 859)
rs2642588(T)/10:71466578 intergenic (0.31, -0.0079, P = 5.8e-06, N = 7824) (0.52, -0.029, P = 0.55, N = 859)
rs12266321(T)/10:78777947* KCNMA1 (0.99, -0.066, P = 6.1e-06, N = 7824) (0.97, 0.24, P = 0.097, N = 859)
rs265455(A)/10:83075585* intergenic (0.29, 0.0072, P = 4.5e-05, N = 7824) (0.39, -0.042, P = 0.39, N = 859)
rs265487(A)/10:83117262* intergenic (0.49, -0.0077, P = 7.6e-06, N = 7824) (0.26, -0.052, P = 0.33, N = 859)
rs10502069(A)/11:106316611* intergenic (0.73, -0.0078, P = 8.4e-06, N = 7824) (0.77, 0.12, P = 0.03, N = 859)
rs1944518(T)/11:120843742* GRIK4 (0.31, -0.0086, P = 1.3e-06, N = 7824) (0.051, -0.18, P = 0.11, N = 859)
rs2922048(T)/11:41389942 LRRC4C (0.66, 0.0071, P = 4.9e-05, N = 7824) (0.45, -0.0089, P = 0.86, N = 859)
rs2510500(C)/11:79194246 intergenic (0.43, -0.0076, P = 1e-05, N = 7824) (0.48, 0.034, P = 0.48, N = 859)
rs12277739(C)/11:87624457* RP11-665E10.3 (0.97, -0.046, P = 2.2e-05, N = 7824) (0.85, 0.046, P = 0.51, N = 859)
rs7312321(A)/12:120036235* TMEM233 (0.35, -0.0072, P = 3.4e-05, N = 7824) (0.4, -0.067, P = 0.17, N = 859)
rs9651790(T)/12:129389777 GLT1D1 (0.47, -0.0073, P = 2.5e-05, N = 7824) (0.22, 0.056, P = 0.35, N = 859)
rs4759824(T)/12:131486985* GPR133 (0.68, 0.0083, P = 1.9e-06, N = 7824) (0.67, -0.038, P = 0.46, N = 859)
rs10505911(A)/12:24022160* SOX5 (0.23, 0.01, P = 3e-05, N = 7824) (0.33, 0.053, P = 0.31, N = 859)
rs58671007(ATT)/13:37491536 SMAD9 (0.012, 0.44, P = 7.5e-06, N = 1951) (0.16, -0.042, P = 0.52, N = 859)
rs12552(A)/13:53625781* OLFM4 (0.44, 0.0074, P = 1.5e-05, N = 7824) (0.4, 0.13, P = 0.0062, N = 859)
rs9317855(T)/13:70543601* KLHL1 (0.35, -0.008, P = 4.3e-06, N = 7824) (0.42, 0.016, P = 0.74, N = 859)
rs9529872(T)/13:71875477* RABEPKP1 (0.024, 0.048, P = 4.8e-05, N = 7824) (0.16, -0.012, P = 0.86, N = 859)
rs1764963(T)/13:86259295 intergenic (0.65, -0.008, P = 4.4e-06, N = 7824) (0.48, -0.054, P = 0.27, N = 859)
rs1956194(G)/14:59477771* RP11-112J1.2 (0.86, -0.21, P = 5.8e-06, N = 1951) (0.86, 0.059, P = 0.37, N = 859)
rs6573359(T)/14:61582316 intergenic (0.98, 0.048, P = 3.3e-05, N = 7824) (0.64, 0.0012, P = 0.98, N = 859)
rs12589229(T)/14:91820675* CCDC88C (0.33, 0.0083, P = 2.4e-06, N = 7824) (0.22, 0.034, P = 0.56, N = 859)
rs2107582(A)/15:25753469 AC124997.1 (0.32, -0.0075, P = 2.2e-05, N = 7824) (0.42, 7e-05, P = 1, N = 859)
rs11070699(T)/15:49800789* FAM227B (0.65, -0.0075, P = 2e-05, N = 7824) (0.49, 0.031, P = 0.53, N = 859)
rs11631036(T)/15:51298925 AP4E1 (0.11, -0.24, P = 9.4e-06, N = 1951) (0.017, -0.2, P = 0.28, N = 859)
rs72734509(G)/15:76093382 intergenic (0.023, 0.55, P = 9.6e-06, N = 1951) (0.013, -0.092, P = 0.67, N = 859)
rs1896864(A)/15:85382193 ALPK3 (0.65, 0.0075, P = 1.6e-05, N = 7824) (0.69, -0.078, P = 0.14, N = 859)
rs7200640(C)/16:12774993 CPPED1 (0.88, -0.014, P = 1.6e-05, N = 7824) (0.93, 0.16, P = 0.078, N = 859)
rs4788439(T)/16:24931798* ARHGAP17 (0.077, -0.027, P = 6.6e-13, N = 7824) (0.67, -0.1, P = 0.051, N = 859)
rs16974319(A)/16:25054644* RP11-266L9.4 (0.42, -0.0072, P = 3.4e-05, N = 7824) (0.45, -0.0011, P = 0.98, N = 859)
rs6500418(T)/16:48876104 intergenic (0.37, -0.0079, P = 5.9e-06, N = 7824) (0.77, -0.039, P = 0.51, N = 859)
rs17711511(C)/16:80066149 intergenic (0.92, -0.015, P = 1.1e-05, N = 7824) (0.98, 0.083, P = 0.65, N = 859)
rs4243227(T)/16:82028082 SDR42E1 (0.8, 0.011, P = 4e-05, N = 7824) (0.95, 0.02, P = 0.85, N = 859)
rs16957235(T)/16:82424223* intergenic (0.99, -0.071, P = 4.3e-06, N = 7824) (0.88, -4.5e-06, P = 1, N = 859)
rs77193496(T)/17:13106988 intergenic (0.035, 0.45, P = 8.7e-06, N = 1951) (0.097, -0.036, P = 0.66, N = 859)
rs12942795(A)/17:34995473 CTB-75G16.3 (0.64, 0.0099, P = 3.6e-05, N = 7824) (0.92, 0.0081, P = 0.93, N = 859)
rs3760124(T)/17:73597919 MYO15B (0.31, 0.0074, P = 2.6e-05, N = 7824) (0.11, -0.2, P = 0.0085, N = 859)
rs2678795(T)/18:28290604* RP11-675P14.1 (0.64, -0.0071, P = 4e-05, N = 7824) (0.57, 0.0099, P = 0.84, N = 859)
rs4940346(C)/18:45105566 CTD-2130O13.1 (0.13, 0.19, P = 4.7e-06, N = 1951) (0.31, 0.0093, P = 0.86, N = 859)
rs9947181(C)/18:45580229 ZBTB7C (0.03, -0.028, P = 9.2e-07, N = 7824) (0.22, -0.1, P = 0.07, N = 859)
rs411805(T)/18:55298886* RP11-35G9.3 (0.47, -0.0071, P = 3.1e-05, N = 7824) (0.59, -0.11, P = 0.027, N = 859)
rs9959796(C)/18:64647334* intergenic (0.98, 0.029, P = 2.6e-05, N = 7824) (0.98, -0.025, P = 0.9, N = 859)
rs722419(A)/19:13360233 CACNA1A (0.45, 0.008, P = 4e-06, N = 7824) (0.31, -0.098, P = 0.062, N = 859)
rs7251640(T)/19:18614935 ELL (0.84, -0.012, P = 1.5e-06, N = 7824) (0.54, -0.03, P = 0.53, N = 859)
rs4808136(A)/19:18618867* ELL (0.34, 0.013, P = 5.4e-14, N = 7824) (0.75, -0.089, P = 0.11, N = 859)
rs34143665(G)/19:18766030 KLHL26 (0.21, 0.18, P = 7.1e-06, N = 1951) (0.034, 0.039, P = 0.77, N = 859)
rs2160717(T)/19:29822729 CTC-525D6.1 (0.4, -0.0087, P = 4.6e-07, N = 7824) (0.38, 0.028, P = 0.58, N = 859)
rs8113823(A)/19:46959053 intergenic (0.15, -0.028, P = 2.5e-05, N = 7824) (0.042, 0.035, P = 0.76, N = 859)
rs1844852(T)/2:117262186 intergenic (0.88, -0.17, P = 3.8e-06, N = 1951) (0.45, -0.07, P = 0.15, N = 859)
rs1492394(A)/2:141032676 LRP1B (0.037, 0.04, P = 2.6e-05, N = 7824) (0.18, 0.023, P = 0.71, N = 859)
rs1965407(A)/2:1429277 TPO (0.23, -0.017, P = 2.7e-05, N = 7824) (0.28, 0.11, P = 0.031, N = 859)
rs4664918(C)/2:158874088 UPP2 (0.59, 0.0071, P = 4.7e-05, N = 7824) (0.27, -0.05, P = 0.36, N = 859)
rs2060198(A)/2:166245230 SCN2A (0.26, -0.017, P = 2.2e-05, N = 7824) (0.16, 0.095, P = 0.14, N = 859)
rs62188095(A)/2:184130538 LIN28AP1 (0.098, -0.24, P = 4.5e-06, N = 1951) (0.015, -0.16, P = 0.44, N = 859)
rs4399682(A)/2:184891621* intergenic (0.72, 0.018, P = 2.1e-06, N = 7824) (0.87, -0.017, P = 0.81, N = 859)
rs4665191(A)/2:23249712* AC016768.1 (0.3, -0.0076, P = 1.7e-05, N = 7824) (0.75, -0.00067, P = 0.99, N = 859)
rs4811076(A)/20:49109845* intergenic (0.49, -0.0074, P = 1.8e-05, N = 7824) (0.39, -0.0048, P = 0.92, N = 859)
rs16996393(A)/20:9753835 PAK7 (0.69, -0.0083, P = 3.2e-06, N = 7824) (0.48, 0.055, P = 0.27, N = 859)
rs2223728(A)/21:22233992 intergenic (0.34, 0.0073, P = 2.5e-05, N = 7824) (0.26, 0.033, P = 0.54, N = 859)
rs2832576(T)/21:31431705* intergenic (0.86, 0.011, P = 1.5e-05, N = 7824) (0.68, -0.036, P = 0.48, N = 859)
rs2834059(A)/21:34375461 AP000282.2 (0.48, -0.0091, P = 1e-06, N = 7824) (0.25, 0.084, P = 0.13, N = 859)
rs5994710(A)/22:33682273 LARGE (0.077, -0.017, P = 1.2e-06, N = 7824) (0.58, -0.0095, P = 0.85, N = 859)
rs4431081(T)/3:111482048 PLCXD2 (0.45, 0.016, P = 2.2e-06, N = 7824) (0.83, -0.023, P = 0.73, N = 859)
rs12491897(A)/3:116356191 LSAMP (0.18, -0.01, P = 2.8e-05, N = 7824) (0.26, 0.00051, P = 0.99, N = 859)
rs10636873(GGA)/3:158701141 IQCJ (0.64, 0.18, P = 8.3e-06, N = 1951) (0.48, 0.017, P = 0.73, N = 859)
rs6786880(T)/3:165855100 intergenic (0.59, 0.0074, P = 1.9e-05, N = 7824) (0.39, 0.013, P = 0.79, N = 859)
rs13092031(A)/3:1719076 intergenic (0.64, -0.0073, P = 3e-05, N = 7824) (0.33, -0.032, P = 0.53, N = 859)
rs572746052(TAAA)/3:172786606 SPATA16 (0.021, -0.12, P = 4.3e-06, N = 1951) (0.43, -0.019, P = 0.69, N = 859)
rs12635393(T)/3:187091583* RTP4 (0.35, 0.015, P = 3.7e-05, N = 7824) (0.19, 0.087, P = 0.15, N = 859)
rs4687367(T)/3:192631798* MB21D2 (0.46, 0.0073, P = 3.5e-05, N = 7824) (0.62, -0.016, P = 0.75, N = 859)
rs937107(T)/3:22331495* ZNF385D (0.019, 0.051, P = 4e-05, N = 7824) (0.13, 0.12, P = 0.094, N = 859)
rs3872668(C)/3:314429* CHL1 (0.37, -0.018, P = 7.3e-07, N = 7824) (0.4, -0.0091, P = 0.85, N = 859)
rs2887159(A)/3:64128189 PRICKLE2 (0.085, 0.24, P = 8.7e-06, N = 1951) (0.15, 0.15, P = 0.026, N = 859)
rs1899372(A)/3:77385745 ROBO2 (0.083, -0.26, P = 7.3e-06, N = 1951) (0.14, -0.055, P = 0.41, N = 859)
rs11934095(A)/4:11884262 intergenic (0.72, -0.0082, P = 3.1e-06, N = 7824) (0.49, 0.011, P = 0.83, N = 859)
rs7678369(A)/4:124525133 intergenic (0.74, 0.18, P = 2.7e-06, N = 1951) (0.41, -0.00038, P = 0.99, N = 859)
rs200970756(T)/4:19170429 RP11-3J1.1 (0.16, 0.23, P = 2.1e-06, N = 1951) (0.091, 0.082, P = 0.32, N = 859)
rs11942812(A)/4:26273531 RBPJ (0.58, 0.0073, P = 2.9e-05, N = 7824) (0.46, -0.017, P = 0.72, N = 859)
rs16879155(T)/4:27304493* intergenic (0.017, 0.056, P = 1.9e-05, N = 7824) (0.15, -0.11, P = 0.1, N = 859)
rs62294538(T)/4:38989940* TMEM156 (0.59, -0.13, P = 8.3e-06, N = 1951) (0.41, -0.0091, P = 0.86, N = 859)
rs77437403(A)/4:57725538 intergenic (0.035, -0.55, P = 1.2e-06, N = 1951) (0.019, 0.42, P = 0.014, N = 859)
rs4690290(C)/4:689502 intergenic (0.46, 0.034, P = 2.1e-05, N = 7824) (0.59, -0.029, P = 0.55, N = 859)
rs4541491(A)/4:82604912* RP11-689K5.3 (0.62, -0.0078, P = 6.6e-06, N = 7824) (0.63, -0.032, P = 0.53, N = 859)
rs6893586(T)/5:163508338* intergenic (0.43, 0.0072, P = 4e-05, N = 7824) (0.7, 0.023, P = 0.65, N = 859)
rs17063000(T)/5:163645278 CTC-207P7.1 (0.24, -0.01, P = 1.5e-05, N = 7824) (0.081, -0.035, P = 0.68, N = 859)
rs12652381(A)/5:170023542* KCNIP1 (0.61, 0.0091, P = 1.6e-07, N = 7824) (0.91, 0.059, P = 0.47, N = 859)
rs4131290(A)/5:176780682* RGS14 (0.7, -0.013, P = 7.5e-08, N = 7824) (0.91, -0.16, P = 0.055, N = 859)
rs13181802(A)/5:55959493 intergenic (0.68, 0.0077, P = 1.1e-05, N = 7824) (0.61, 0.057, P = 0.28, N = 859)
rs386161(T)/5:57916579* RAB3C (0.58, -0.0075, P = 2.3e-05, N = 7824) (0.82, 0.036, P = 0.56, N = 859)
rs588527(C)/5:9992296 intergenic (0.95, 0.14, P = 7.5e-06, N = 1951) (0.86, -0.14, P = 0.058, N = 859)
rs2400108(T)/6:105810450* PREP (0.85, 0.01, P = 4.6e-05, N = 7824) (0.33, -0.042, P = 0.41, N = 859)
rs12210249(T)/6:110996079 CDK19 (0.032, -0.5, P = 5.9e-06, N = 1951) (0.048, 0.19, P = 0.087, N = 859)
rs17052573(A)/6:125306814* RNF217 (0.63, 0.0072, P = 3.7e-05, N = 7824) (0.93, 0.045, P = 0.64, N = 859)
rs9369768(A)/6:13035947* PHACTR1 (0.55, -0.007, P = 4.9e-05, N = 7824) (0.16, 0.035, P = 0.59, N = 859)
rs2496162(G)/6:13361088 GFOD1 (0.55, 0.14, P = 4.2e-06, N = 1951) (0.62, 0.006, P = 0.91, N = 859)
rs7758383(A)/6:143169723* HIVEP2 (0.51, -0.0074, P = 1.5e-05, N = 7824) (0.69, 0.084, P = 0.11, N = 859)
rs2504067(A)/6:152095987* ESR1 (0.49, 0.0079, P = 8.3e-06, N = 7824) (0.43, -0.11, P = 0.026, N = 859)
rs17083966(T)/6:153698951* intergenic (0.02, 0.056, P = 5e-06, N = 7824) (0.066, 0.12, P = 0.19, N = 859)
rs11751128(T)/6:155561796* TIAM2 (0.29, 0.0072, P = 4e-05, N = 7824) (0.043, -0.027, P = 0.81, N = 859)
rs12191236(C)/6:157304918* ARID1B (0.69, 0.0083, P = 2.3e-06, N = 7824) (0.84, -0.051, P = 0.43, N = 859)
rs7760342(A)/6:45195424 SUPT3H (0.5, 0.016, P = 3.9e-06, N = 7824) (0.22, -0.044, P = 0.45, N = 859)
rs1265213(A)/6:4521298* intergenic (0.8, 0.011, P = 1.1e-05, N = 7824) (0.77, -0.0085, P = 0.88, N = 859)
rs6938321(C)/6:88836054 intergenic (0.11, 0.19, P = 8.3e-06, N = 1951) (0.12, 0.057, P = 0.45, N = 859)
rs57240465(G)/7:125463191 intergenic (0.45, -0.16, P = 9.5e-06, N = 1951) (0.12, 0.03, P = 0.67, N = 859)
rs7805995(A)/7:146516466 CNTNAP2 (0.99, 0.068, P = 2e-05, N = 7824) (0.37, 0.02, P = 0.68, N = 859)
rs10480299(T)/7:151405818* PRKAG2 (0.72, -0.0077, P = 1.3e-05, N = 7824) (0.71, -0.024, P = 0.65, N = 859)
rs12718636(A)/7:52500628* intergenic (0.7, -0.0073, P = 2.8e-05, N = 7824) (0.91, 0.046, P = 0.58, N = 859)
rs41608(T)/7:82651558 PCLO (0.69, 0.0073, P = 2.5e-05, N = 7824) (0.9, -0.014, P = 0.86, N = 859)
rs10086673(T)/8:10305317* intergenic (0.29, 0.0089, P = 5.3e-07, N = 7824) (0.32, -0.025, P = 0.63, N = 859)
rs7837995(T)/8:11485820 intergenic (0.45, 0.0089, P = 4.3e-07, N = 7824) (0.76, 0.0034, P = 0.95, N = 859)
rs10112981(A)/8:114965243* Y_RNA (0.29, -0.008, P = 6.1e-06, N = 7824) (0.48, 0.011, P = 0.82, N = 859)
rs2466216(G)/8:22775716* PEBP4 (0.22, 0.21, P = 2.4e-06, N = 1951) (0.034, -0.094, P = 0.48, N = 859)
rs2726955(T)/8:27797374* SCARA5 (0.65, 0.0071, P = 4.9e-05, N = 7824) (0.59, -0.089, P = 0.071, N = 859)
rs6997739(C)/8:51365291 SNTG1 (0.2, -0.01, P = 1.9e-05, N = 7824) (0.78, 0.052, P = 0.36, N = 859)
rs1483643(A)/8:51459757* SNTG1 (0.13, -0.011, P = 3.6e-05, N = 7824) (0.42, -0.028, P = 0.56, N = 859)
rs6995644(A)/8:63635874 NKAIN3 (0.87, -0.011, P = 4e-05, N = 7824) (0.36, 0.14, P = 0.0071, N = 859)
rs3885979(T)/8:70767051* RP11-159H10.1 (0.093, -0.013, P = 4.9e-05, N = 7824) (0.26, -0.046, P = 0.4, N = 859)
rs3104992(A)/8:96572791 KB-1047C11.2 (0.34, 0.0074, P = 2.2e-05, N = 7824) (0.49, 0.073, P = 0.12, N = 859)
rs2807592(T)/9:126893436 intergenic (0.7, -0.0081, P = 4.5e-06, N = 7824) (0.94, -0.11, P = 0.29, N = 859)
rs16936951(A)/9:18657061 ADAMTSL1 (0.94, -0.015, P = 4.4e-05, N = 7824) (0.95, 0.035, P = 0.76, N = 859)
rs10491883(C)/9:28562256 LINGO2 (0.16, -0.21, P = 8.8e-06, N = 1951) (0.27, -0.0081, P = 0.88, N = 859)
rs744093(A)/9:32700942 intergenic (0.89, -0.024, P = 8.5e-06, N = 7824) (0.99, -0.25, P = 0.21, N = 859)
rs11144033(A)/9:77258265 RORB (0.57, 0.0072, P = 2.8e-05, N = 7824) (0.74, -0.055, P = 0.32, N = 859)
rs10867301(A)/9:81528270 intergenic (0.34, -0.0077, P = 1.2e-05, N = 7824) (0.35, 0.036, P = 0.47, N = 859)
Results from Univariable Mendelian Randomization of myo-Inositol & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 139 -0.041 (-0.16- 0.079) P=0.51 4.4 29 0.000591 (0- 92.3) NA NA -0.0032 P=0.62
MR-Egger 139 -0.024 (-0.16- 0.11) P=0.74 4.4 29 0.000591 (0- 92.3) 164 0.06 -0.0032 P=0.62
Weighted median 139 -0.081 (-0.25- 0.09) P=0.35 4.4 29 0.000591 (0- 92.3) NA NA -0.0032 P=0.62
Results from Univariable MRPRESSO of myo-Inositol & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.04 0.06 -0.67 0.51
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of myo-Inositol & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 76 -0.029 (-0.15- 0.095) P=0.65 6.8 25 2.05 (0- 94.8) NA NA -0.0081 P=0.37
MR-Egger 76 0.0087 (-0.14- 0.16) P=0.91 6.8 25 2.05 (0- 94.8) 88 0.13 -0.0081 P=0.37
Weighted median 76 -0.076 (-0.25- 0.096) P=0.39 6.8 25 2.05 (0- 94.8) NA NA -0.0081 P=0.37
Results from Univariable MRPRESSO of myo-Inositol & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.06 -0.46 0.65
beta.exposure Outlier-corrected NA NA NA NA

Kynurenic acid

Instruments Associations with Kynurenic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Kynurenic acid (Shin et al/Long et al) eGFR (CSSCD)
rs61825638(T)/1:241713402 KMO (0.24, 0.31, P = 2.3e-16, N = 1958) (0.055, 0.021, P = 0.83, N = 859)
rs1499662(C)/1:56057849* RP11-466L17.1 (0.86, -0.22, P = 9e-06, N = 1958) (0.62, 0.017, P = 0.73, N = 859)
rs2114406(G)/10:90033593* RNLS (0.34, -0.19, P = 3.8e-08, N = 1958) (0.17, 0.037, P = 0.56, N = 859)
rs112927155(TAATGGATGTC)/11:58668376 AP001652.1 (0.77, 0.1, P = 9.5e-06, N = 1958) (0.6, -0.046, P = 0.35, N = 859)
rs11531036(A)/12:21241016 SLCO1B7 (0.017, 0.6, P = 5.1e-06, N = 1958) (0.058, -0.21, P = 0.039, N = 859)
rs10784757(A)/12:69508022* AC139931.1 (0.74, 0.19, P = 6.4e-06, N = 1958) (0.6, 0.029, P = 0.55, N = 859)
rs2391396(T)/13:107626059 AL354741.1 (0.51, -0.16, P = 5.9e-07, N = 1958) (0.33, 0.013, P = 0.81, N = 859)
rs1333184(T)/13:107643612 intergenic (0.5, -0.15, P = 7.7e-06, N = 1958) (0.3, 0.057, P = 0.28, N = 859)
rs9597397(C)/13:56963440* intergenic (0.19, 0.19, P = 6.7e-06, N = 1958) (0.068, 0.14, P = 0.16, N = 859)
rs9517419(C)/13:99373101 SLC15A1 (0.11, -0.28, P = 5.5e-06, N = 1958) (0.21, 0.039, P = 0.51, N = 859)
rs8054775(T)/16:58793570* RP11-410D17.2 (0.11, 0.22, P = 4.1e-21, N = 1958) (0.4, -0.11, P = 0.024, N = 859)
rs11864685(T)/16:58805130* RP11-410D17.2 (0.12, 0.42, P = 5.1e-22, N = 1958) (0.39, -0.092, P = 0.055, N = 859)
rs200341493(AT)/17:2808176 RAP1GAP2 (0.071, 0.25, P = 6.2e-06, N = 1958) (0.056, -0.057, P = 0.58, N = 859)
rs57861026(G)/3:76996620 ROBO2 (0.059, 0.41, P = 2e-06, N = 1958) (0.04, 0.081, P = 0.51, N = 859)
rs113677552(G)/4:56843171* CEP135 (0.011, 0.85, P = 6.1e-06, N = 1958) (0.014, 0.12, P = 0.55, N = 859)
rs17208191(G)/5:13846802* DNAH5 (0.15, 0.18, P = 9.7e-06, N = 1958) (0.14, 0.032, P = 0.63, N = 859)
rs546403634(CCCG)/6:151186857 MTHFD1L (0.082, 0.25, P = 2.5e-06, N = 1958) (0.98, 0.31, P = 0.076, N = 859)
rs2342637(T)/6:169020665* SMOC2 (0.69, -0.2, P = 6e-06, N = 1958) (0.54, -0.011, P = 0.81, N = 859)
rs862427(C)/6:38843970 DNAH8 (0.88, 0.22, P = 4e-06, N = 1958) (0.88, -0.071, P = 0.33, N = 859)
rs12533147(G)/7:4200552 SDK1 (0.51, -0.13, P = 4.3e-06, N = 1958) (0.21, 0.075, P = 0.21, N = 859)
rs112860567(C)/8:11273641 C8orf12 (0.13, 0.25, P = 5.8e-06, N = 1958) (0.19, 0.005, P = 0.94, N = 859)
rs7014584(A)/8:59886072 TOX (0.92, -0.3, P = 5.3e-07, N = 1958) (0.98, 0.041, P = 0.83, N = 859)
rs140664372(T)/8:99851438 STK3 (0.016, 0.83, P = 8.6e-07, N = 1958) (0.037, -0.058, P = 0.65, N = 859)
rs12350923(T)/9:8189408 intergenic (0.093, 0.27, P = 7.3e-06, N = 1958) (0.11, 0.15, P = 0.052, N = 859)
Results from Univariable Mendelian Randomization of Kynurenic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 24 -0.1 (-0.21- 0.0038) P=0.059 29 35 6.51 (0- 63.7) NA NA -0.0028 P=0.93
MR-Egger 24 -0.093 (-0.33- 0.14) P=0.45 29 35 6.51 (0- 63.7) 25 0.27 -0.0028 P=0.93
Weighted median 24 -0.079 (-0.23- 0.071) P=0.3 29 35 6.51 (0- 63.7) NA NA -0.0028 P=0.93
Results from Univariable MRPRESSO of Kynurenic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.1 0.05 -1.89 0.07
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Kynurenic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 15 -0.095 (-0.24- 0.053) P=0.21 28 21 5.73 (0- 74) NA NA -0.02 P=0.63
MR-Egger 15 -0.032 (-0.33- 0.26) P=0.83 28 21 5.73 (0- 74) 15 0.3 -0.02 P=0.63
Weighted median 15 -0.078 (-0.29- 0.13) P=0.47 28 21 5.73 (0- 74) NA NA -0.02 P=0.63
Results from Univariable MRPRESSO of Kynurenic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.1 0.08 -1.26 0.23
beta.exposure Outlier-corrected NA NA NA NA

L-Kynurenine

Instruments Associations with L-Kynurenine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Kynurenine (Shin et al/Long et al) eGFR (CSSCD)
rs1530683(G)/1:104990673* intergenic (0.87, -0.2, P = 7.5e-06, N = 1955) (0.78, -0.059, P = 0.32, N = 859)
rs6702848(T)/1:11453577* intergenic (0.6, 0.0077, P = 1.1e-05, N = 7824) (0.5, 0.013, P = 0.79, N = 859)
rs21327(A)/1:146528521* NBPF13P (0.29, 0.0095, P = 1.2e-07, N = 7824) (0.15, -0.0038, P = 0.95, N = 859)
rs7549498(A)/1:182363623* GLUL (0.44, 0.16, P = 3.8e-06, N = 1955) (0.75, 0.022, P = 0.68, N = 859)
rs1687113(T)/1:238082623* RP11-193H5.1 (0.23, 0.19, P = 5.9e-06, N = 1955) (0.66, 0.11, P = 0.037, N = 859)
rs12082398(T)/1:25234781 RUNX3 (0.59, 0.012, P = 9.3e-07, N = 7824) (0.11, 0.058, P = 0.44, N = 859)
rs7548008(A)/1:43202095* CLDN19 (0.5, 0.016, P = 3.6e-06, N = 7824) (0.59, 0.12, P = 0.016, N = 859)
rs9436977(G)/1:56122967 RP11-466L17.1 (0.035, -0.39, P = 6.4e-06, N = 1955) (0.4, -0.03, P = 0.53, N = 859)
rs2375475(T)/1:65211843 RAVER2 (0.32, -0.0084, P = 1.4e-06, N = 7824) (0.78, -0.022, P = 0.71, N = 859)
rs274588(G)/1:74942672 FPGT-TNNI3K (0.58, 0.14, P = 4.5e-06, N = 1955) (0.46, 0.0035, P = 0.94, N = 859)
rs669764(T)/1:78691660* RP11-183M13.1 (0.32, -0.0078, P = 7.7e-06, N = 7824) (0.63, -0.018, P = 0.71, N = 859)
rs11162752(A)/1:80060337* intergenic (0.6, -0.0077, P = 8.1e-06, N = 7824) (0.37, -0.033, P = 0.51, N = 859)
rs2491294(A)/1:88302604* intergenic (0.31, -0.01, P = 5.7e-07, N = 7824) (0.26, 0.02, P = 0.71, N = 859)
rs7906282(T)/10:19083596* intergenic (0.31, 0.0094, P = 8.1e-08, N = 7824) (0.25, 0.00041, P = 0.99, N = 859)
rs16924894(A)/10:24845525* intergenic (0.024, 0.081, P = 2.3e-08, N = 7824) (0.083, -0.14, P = 0.12, N = 859)
rs11593042(A)/10:6933467* RP11-799O21.2 (0.092, 0.015, P = 4.5e-06, N = 7824) (0.016, -0.28, P = 0.16, N = 859)
rs12802337(A)/11:55531892* intergenic (0.078, -0.016, P = 6e-06, N = 7824) (0.16, -0.086, P = 0.17, N = 859)
rs511797(A)/11:95895139 MAML2 (0.13, 0.012, P = 3.8e-06, N = 7824) (0.024, -0.073, P = 0.64, N = 859)
rs3184504(T)/12:111884608* SH2B3 (0.49, 0.015, P = 6e-18, N = 7824) (0.073, -0.03, P = 0.74, N = 859)
rs10744774(A)/12:112090022* BRAP (0.83, 0.012, P = 2.4e-06, N = 7824) (0.98, -0.14, P = 0.37, N = 859)
rs739744(T)/12:113185462 RPH3A (0.55, -0.0082, P = 1.9e-06, N = 7824) (0.46, -0.052, P = 0.3, N = 859)
rs11057695(T)/12:125083336* intergenic (0.057, 0.021, P = 8e-06, N = 7824) (0.016, -0.25, P = 0.19, N = 859)
rs3789978(A)/12:32947193* PKP2 (0.85, 0.012, P = 1.3e-06, N = 7824) (0.67, 0.088, P = 0.083, N = 859)
rs28815546(T)/12:622231 B4GALNT3 (0.026, 0.48, P = 1.2e-06, N = 1955) (0.3, 0.12, P = 0.022, N = 859)
rs3809198(A)/12:96883306* C12orf55 (0.02, 0.055, P = 4.3e-06, N = 7824) (0.078, -0.15, P = 0.082, N = 859)
rs9533582(A)/13:44250866* ENOX1 (0.035, -0.022, P = 1e-05, N = 7824) (0.13, 0.0072, P = 0.92, N = 859)
rs2324935(A)/13:66985241 PCDH9 (0.53, 0.0075, P = 1.5e-05, N = 7824) (0.73, -0.02, P = 0.71, N = 859)
rs1952337(A)/14:67608948 GPHN (0.64, -0.0076, P = 1.2e-05, N = 7824) (0.15, 0.025, P = 0.71, N = 859)
rs434943(A)/14:69314059* RN7SL224P (0.32, -0.0077, P = 1.5e-05, N = 7824) (0.14, -0.086, P = 0.23, N = 859)
rs6575634(T)/14:98248954* RP11-204N11.2 (0.62, -0.016, P = 4.8e-06, N = 7824) (0.38, -0.039, P = 0.42, N = 859)
rs2651516(T)/15:53302309* intergenic (0.66, 0.008, P = 4.3e-06, N = 7824) (0.19, -0.063, P = 0.29, N = 859)
rs11646849(A)/16:82817251* CDH13 (0.5, -0.0086, P = 6.4e-07, N = 7824) (0.29, -0.073, P = 0.16, N = 859)
rs8063871(A)/16:87863500* SLC7A5 (0.71, 0.017, P = 4.7e-12, N = 7824) (0.69, -0.065, P = 0.21, N = 859)
rs8051149(A)/16:87878822* SLC7A5 (0.21, 0.026, P = 9.1e-26, N = 7824) (0.6, 0.045, P = 0.36, N = 859)
rs2434860(T)/16:89696217 DPEP1 (0.41, 0.26, P = 1.1e-07, N = 1955) (0.16, 0.058, P = 0.39, N = 859)
rs164746(A)/16:89709019* DPEP1 (0.41, 0.19, P = 7.8e-08, N = 1955) (0.19, 0.022, P = 0.73, N = 859)
rs12937634(T)/17:47444442* ZNF652 (0.54, -0.0082, P = 2.3e-06, N = 7824) (0.58, -0.0042, P = 0.93, N = 859)
rs180050(T)/17:67977529 AC004562.1 (0.58, 0.008, P = 7.6e-06, N = 7824) (0.097, -0.028, P = 0.74, N = 859)
rs16974854(T)/17:68029032* AC002539.1 (0.038, -0.023, P = 1.2e-06, N = 7824) (0.019, 0.019, P = 0.92, N = 859)
rs7240271(A)/18:56909115* intergenic (0.51, 0.0074, P = 1.4e-05, N = 7824) (0.24, -0.076, P = 0.18, N = 859)
rs4891267(A)/18:73076464* intergenic (0.78, -0.18, P = 2e-06, N = 1955) (0.59, -0.0073, P = 0.88, N = 859)
rs8090890(C)/18:75305345 intergenic (0.64, -0.0075, P = 1.5e-05, N = 7824) (0.57, 0.052, P = 0.3, N = 859)
rs2270623(T)/19:18245512* MAST3 (0.54, -0.0076, P = 1.2e-05, N = 7824) (0.33, 0.012, P = 0.81, N = 859)
rs1496635(A)/19:31692461* CTC-439O9.3 (0.34, -0.0091, P = 2.1e-07, N = 7824) (0.24, 0.014, P = 0.81, N = 859)
rs113916293(GGT)/19:45966650 FOSB (0.28, -0.22, P = 9.4e-06, N = 1955) (0.68, -0.11, P = 0.042, N = 859)
rs260621(T)/2:109628974* intergenic (0.53, 0.026, P = 1.5e-05, N = 7824) (0.91, 0.13, P = 0.11, N = 859)
rs13415349(C)/2:223924792 KCNE4 (0.088, 0.22, P = 4e-06, N = 1955) (0.25, -0.12, P = 0.028, N = 859)
rs2161901(A)/2:36465942 intergenic (0.45, 0.16, P = 8.6e-06, N = 1955) (0.81, 0.027, P = 0.66, N = 859)
rs759507(T)/2:50754813* NRXN1 (0.37, 0.008, P = 5.2e-06, N = 7824) (0.088, -0.055, P = 0.53, N = 859)
rs1239074(T)/2:78842192* intergenic (0.74, 0.011, P = 1.2e-05, N = 7824) (0.58, -0.0094, P = 0.85, N = 859)
rs145129891(A)/20:4798828 RASSF2 (0.058, 0.34, P = 1.8e-06, N = 1955) (0.011, -0.14, P = 0.54, N = 859)
rs756577(T)/21:44118323* PDE9A (0.38, 0.0078, P = 1e-05, N = 7824) (0.06, -0.07, P = 0.48, N = 859)
rs6518219(T)/21:46654717* LINC00334 (0.051, 0.32, P = 1.5e-06, N = 1955) (0.32, 0.091, P = 0.072, N = 859)
rs5756751(C)/22:22423139 IGLVIV-65 (0.36, -0.18, P = 7.9e-06, N = 1955) (0.71, 0.084, P = 0.11, N = 859)
rs3859880(C)/22:26232110* MYO18B (0.34, -0.17, P = 3.5e-06, N = 1955) (0.51, 0.024, P = 0.63, N = 859)
rs4820242(A)/22:36982675* CACNG2 (0.62, -0.0085, P = 9e-07, N = 7824) (0.76, -0.041, P = 0.47, N = 859)
rs3788706(A)/22:46869170* CELSR1 (0.13, -0.012, P = 6.1e-06, N = 7824) (0.16, 0.081, P = 0.21, N = 859)
rs6770323(T)/3:161850410* intergenic (0.43, -0.008, P = 3.3e-06, N = 7824) (0.14, 0.13, P = 0.069, N = 859)
rs7619568(A)/3:191433799* intergenic (0.94, 0.018, P = 9.5e-06, N = 7824) (0.79, 0.021, P = 0.71, N = 859)
rs12490394(T)/3:5496096* intergenic (0.5, 0.0084, P = 8e-06, N = 7824) (0.42, 0.031, P = 0.53, N = 859)
rs9857268(A)/3:83398721* intergenic (0.41, 0.008, P = 3.1e-06, N = 7824) (0.18, -0.045, P = 0.47, N = 859)
rs7619096(A)/3:84199075* intergenic (0.69, 0.008, P = 4.9e-06, N = 7824) (0.59, 0.051, P = 0.29, N = 859)
rs2320536(T)/4:140801676* MAML3 (0.41, 0.0081, P = 3.3e-06, N = 7824) (0.31, 0.024, P = 0.63, N = 859)
rs1426134(C)/4:14179729 RP11-669M16.1 (0.37, -0.0081, P = 3.8e-06, N = 7824) (0.18, -0.058, P = 0.35, N = 859)
rs10857319(T)/4:159729794* FNIP2 (0.35, -0.0086, P = 9.5e-07, N = 7824) (0.061, -0.071, P = 0.49, N = 859)
rs10937762(A)/4:6918679* TBC1D14 (0.57, 0.0078, P = 8.2e-06, N = 7824) (0.68, 0.072, P = 0.16, N = 859)
rs13110221(T)/4:9517737 OR7E83P (0.82, 0.18, P = 8.1e-06, N = 1955) (0.48, -0.0038, P = 0.94, N = 859)
rs6815057(A)/4:97782257 intergenic (0.58, 0.0085, P = 1.1e-06, N = 7824) (0.88, 0.015, P = 0.84, N = 859)
rs10072101(A)/5:105182600 intergenic (0.38, -0.0077, P = 1.4e-05, N = 7824) (0.49, 0.045, P = 0.35, N = 859)
rs3131010(T)/6:31105147 PSORS1C1 (0.15, 0.24, P = 1.5e-06, N = 1955) (0.056, -0.11, P = 0.31, N = 859)
rs112790520(C)/6:33024031 intergenic (0.049, 0.43, P = 3.2e-06, N = 1955) (0.17, 0.093, P = 0.15, N = 859)
rs75219340(C)/7:113576177 PPP1R3A (0.015, -0.74, P = 2.3e-06, N = 1955) (0.16, -0.0023, P = 0.97, N = 859)
rs13224451(T)/7:128155486* intergenic (0.16, -0.18, P = 9.7e-06, N = 1955) (0.22, 0.086, P = 0.14, N = 859)
rs6946693(T)/7:70153068* AUTS2 (0.71, 0.01, P = 9.2e-06, N = 7824) (0.91, -0.14, P = 0.087, N = 859)
rs6978674(T)/7:77859611* MAGI2 (0.59, 0.0076, P = 1.3e-05, N = 7824) (0.88, 0.05, P = 0.49, N = 859)
rs11563854(C)/7:90142005* CTB-13L3.1 (0.067, 0.28, P = 5.1e-06, N = 1955) (0.15, -0.076, P = 0.26, N = 859)
rs10263361(G)/7:93678234 AC003092.1 (0.59, -0.12, P = 9.2e-06, N = 1955) (0.93, -0.17, P = 0.074, N = 859)
rs35534138(A)/8:38894334 ADAM9 (0.29, -0.16, P = 9.3e-07, N = 1955) (0.13, 0.12, P = 0.096, N = 859)
rs10085935(T)/8:39806267* IDO2 (0.38, -0.01, P = 3.3e-09, N = 7824) (0.35, -0.0088, P = 0.86, N = 859)
rs7843776(T)/8:75008787* RP11-6I2.3 (0.4, -0.0084, P = 7.4e-06, N = 7824) (0.31, -0.09, P = 0.084, N = 859)
rs542062(G)/9:134191501 intergenic (0.83, 0.18, P = 5.2e-06, N = 1955) (0.53, 0.016, P = 0.75, N = 859)
rs7851112(T)/9:7029050 KDM4C (0.62, -0.0077, P = 1.2e-05, N = 7824) (0.8, -0.028, P = 0.65, N = 859)
Results from Univariable Mendelian Randomization of L-Kynurenine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 82 0.079 (-0.0076- 0.17) P=0.074 8.1 32 11.1 (0- 82.9) NA NA 0.006 P=0.48
MR-Egger 82 0.059 (-0.046- 0.16) P=0.28 8.1 32 11.1 (0- 82.9) 93 0.16 0.006 P=0.48
Weighted median 82 0.072 (-0.053- 0.2) P=0.26 8.1 32 11.1 (0- 82.9) NA NA 0.006 P=0.48
Results from Univariable MRPRESSO of L-Kynurenine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.08 0.04 1.79 0.08
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Kynurenine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 28 0.072 (-0.027- 0.17) P=0.16 15 22 21.9 (0- 69.7) NA NA -0.0066 P=0.7
MR-Egger 28 0.091 (-0.047- 0.23) P=0.21 15 22 21.9 (0- 69.7) 31 0.24 -0.0066 P=0.7
Weighted median 28 0.054 (-0.09- 0.2) P=0.46 15 22 21.9 (0- 69.7) NA NA -0.0066 P=0.7
Results from Univariable MRPRESSO of L-Kynurenine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.07 0.05 1.42 0.17
beta.exposure Outlier-corrected NA NA NA NA

L-Lactic acid

Instruments Associations with L-Lactic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Lactic acid (Shin et al/Long et al) eGFR (CSSCD)
rs4631734(T)/1:171220236* RP1-45C12.1 (0.069, 0.017, P = 2.1e-05, N = 7365) (0.12, -0.052, P = 0.47, N = 859)
rs1193345(A)/1:17913714* ARHGEF10L (0.94, -0.022, P = 1.4e-06, N = 7365) (0.79, 0.029, P = 0.62, N = 859)
rs1775466(A)/1:197754967* intergenic (0.2, -0.011, P = 1.8e-05, N = 7365) (0.083, -0.082, P = 0.35, N = 859)
rs2906458(A)/1:44336389* ST3GAL3 (0.75, 0.0096, P = 4.5e-05, N = 7365) (0.2, 0.035, P = 0.56, N = 859)
rs10788232(T)/10:123803584* TACC2 (0.68, -0.011, P = 2.5e-06, N = 7365) (0.31, -0.076, P = 0.15, N = 859)
rs11253881(A)/10:16321532* RP11-461K13.1 (0.067, -0.018, P = 2.1e-05, N = 7365) (0.064, 0.095, P = 0.34, N = 859)
rs16937124(A)/10:36885746* intergenic (0.95, -0.021, P = 5.6e-06, N = 7365) (0.94, -0.014, P = 0.89, N = 859)
rs1930151(A)/10:56331387* PCDH15 (0.025, -0.029, P = 3.3e-05, N = 7365) (0.15, 0.012, P = 0.86, N = 859)
rs5785130(AT)/10:57194371 RP11-168O22.1 (0.4, 0.08, P = 6.9e-06, N = 1957) (0.91, 0.12, P = 0.14, N = 859)
rs7090753(A)/10:67201788* intergenic (0.99, 0.068, P = 3.3e-05, N = 1761) (0.79, -0.2, P = 0.00074, N = 859)
rs10887850(C)/10:90490627* LIPK (0.33, 0.19, P = 3e-06, N = 1957) (0.44, 0.00078, P = 0.99, N = 859)
rs10734178(A)/11:11244511 intergenic (0.82, 0.17, P = 2.9e-06, N = 1957) (0.74, -0.00071, P = 0.99, N = 859)
rs948094(C)/11:121092679 intergenic (0.51, -0.19, P = 8.6e-06, N = 1957) (0.25, -0.17, P = 0.0026, N = 859)
rs939522(C)/11:126691069 KIRREL3 (0.78, 0.21, P = 6.5e-07, N = 1957) (0.95, -0.064, P = 0.57, N = 859)
rs1499511(C)/11:36087853 LDLRAD3 (0.58, 0.18, P = 9.8e-06, N = 1957) (0.86, -0.053, P = 0.44, N = 859)
rs79469454(T)/11:4173635 intergenic (0.24, 0.23, P = 8.7e-06, N = 1957) (0.23, -0.06, P = 0.3, N = 859)
rs72931768(C)/11:69829717 RP11-626H12.1 (0.11, -0.24, P = 4.8e-06, N = 1957) (0.037, 0.11, P = 0.39, N = 859)
rs4763349(G)/12:13623999 intergenic (0.91, 0.3, P = 3.9e-06, N = 1957) (0.86, 0.15, P = 0.027, N = 859)
rs2242578(C)/12:57853153* GLI1 (0.67, -0.011, P = 5.1e-06, N = 7365) (0.49, -0.051, P = 0.29, N = 859)
rs6581752(A)/12:67777751 intergenic (0.22, -0.01, P = 1.9e-05, N = 7365) (0.8, 0.0048, P = 0.94, N = 859)
rs1330523(A)/13:104925616* intergenic (0.23, -0.012, P = 1.6e-06, N = 7365) (0.26, -0.014, P = 0.79, N = 859)
rs278050(A)/13:30436968* TIMM8BP1 (0.8, 0.01, P = 4.2e-05, N = 7365) (0.65, 0.064, P = 0.21, N = 859)
rs1751857(T)/13:40969438* intergenic (0.93, 0.016, P = 2.6e-05, N = 7365) (0.87, 0.083, P = 0.25, N = 859)
rs7995949(T)/13:63339902 intergenic (0.98, 0.031, P = 2.8e-05, N = 7365) (0.89, 0.023, P = 0.77, N = 859)
rs6571843(C)/14:21940701* RAB2B (0.063, 0.018, P = 1.4e-05, N = 7365) (0.016, -0.45, P = 0.019, N = 859)
rs12897027(T)/14:73190091 DPF3 (0.33, -0.14, P = 4.6e-06, N = 1957) (0.15, -0.027, P = 0.68, N = 859)
rs7155689(G)/14:98585327 RP11-61O1.1 (0.39, -0.16, P = 1.1e-06, N = 1957) (0.25, 0.015, P = 0.78, N = 859)
rs17392679(T)/15:49310954* SECISBP2L (0.075, 0.016, P = 4.4e-05, N = 7365) (0.014, 0.19, P = 0.35, N = 859)
rs10851537(C)/15:53555661* intergenic (0.97, 0.49, P = 3.2e-06, N = 1957) (0.96, 0.15, P = 0.25, N = 859)
rs7172532(G)/15:54369796 UNC13C (0.57, 0.17, P = 7.7e-06, N = 1957) (0.22, -0.094, P = 0.12, N = 859)
rs10851750(A)/15:66121590* RAB11A (0.13, -0.013, P = 2.9e-05, N = 7365) (0.3, 0.031, P = 0.58, N = 859)
rs2911125(T)/16:65557406 LINC00922 (0.15, 0.013, P = 3.7e-05, N = 7365) (0.047, -0.16, P = 0.18, N = 859)
rs3096276(T)/16:65577365* LINC00922 (0.16, 0.012, P = 4.5e-05, N = 7365) (0.063, -0.093, P = 0.35, N = 859)
rs17687360(C)/16:7708034* RBFOX1 (0.12, -0.28, P = 6.8e-06, N = 1957) (0.022, -0.005, P = 0.98, N = 859)
rs3785024(A)/16:84136233 MBTPS1 (0.95, -0.022, P = 5.6e-06, N = 7365) (0.98, 0.023, P = 0.88, N = 859)
rs234608(T)/17:15583555 TRIM16 (0.15, -0.021, P = 3.2e-05, N = 1761) (0.28, -0.077, P = 0.15, N = 859)
rs112207538(G)/18:18684507 ROCK1 (0.047, -0.39, P = 4.2e-06, N = 1957) (0.12, -0.09, P = 0.21, N = 859)
rs2000812(T)/18:47093790* LIPG (0.82, 0.011, P = 9.7e-06, N = 7365) (0.96, -0.13, P = 0.31, N = 859)
rs2305996(A)/18:693828 ENOSF1 (0.63, 0.015, P = 3.1e-05, N = 1761) (0.7, -0.047, P = 0.36, N = 859)
rs10424746(A)/19:11839659* ZNF823 (0.98, -0.052, P = 1e-05, N = 1761) (0.75, 0.073, P = 0.18, N = 859)
rs35054599(A)/2:123156656 intergenic (0.47, -0.19, P = 6e-06, N = 1957) (0.39, 0.019, P = 0.69, N = 859)
rs4316948(T)/2:162834595* SLC4A10 (0.8, 0.01, P = 4.3e-05, N = 7365) (0.86, 0.053, P = 0.45, N = 859)
rs780093(T)/2:27742603* GCKR (0.4, 0.012, P = 1.9e-07, N = 7365) (0.14, -0.071, P = 0.3, N = 859)
rs4635489(A)/2:30126856 ALK (0.018, 0.036, P = 5.7e-06, N = 7365) (0.14, -0.15, P = 0.036, N = 859)
rs4425121(C)/2:41341481 intergenic (0.47, -0.13, P = 4.5e-06, N = 1957) (0.28, 0.0067, P = 0.9, N = 859)
rs10202912(G)/2:66786405 MEIS1 (0.54, 0.13, P = 9.5e-06, N = 1957) (0.55, 0.061, P = 0.22, N = 859)
rs13403441(A)/2:83225802* intergenic (0.86, -0.024, P = 1e-06, N = 1761) (0.65, -0.039, P = 0.44, N = 859)
rs6736348(A)/2:85506104* TCF7L1 (0.79, 0.0099, P = 4.2e-05, N = 7365) (0.49, -0.024, P = 0.61, N = 859)
rs6105651(A)/20:16740242 OTOR (0.74, 0.0097, P = 4.8e-05, N = 7365) (0.85, -0.037, P = 0.58, N = 859)
rs13038639(A)/20:24893918* intergenic (0.22, 0.01, P = 1.9e-05, N = 7365) (0.04, 0.054, P = 0.66, N = 859)
rs6139395(A)/20:4309611* intergenic (0.2, -0.011, P = 1.7e-05, N = 7365) (0.069, 0.11, P = 0.23, N = 859)
rs2826779(T)/21:22669952* NCAM2 (0.27, 0.016, P = 4.3e-05, N = 1761) (0.46, -0.093, P = 0.048, N = 859)
rs9607371(T)/22:37083494* CACNG2 (0.79, -0.01, P = 3.9e-05, N = 7365) (0.95, -0.0057, P = 0.96, N = 859)
rs4688540(A)/3:61408148* intergenic (0.041, -0.025, P = 3.1e-05, N = 5604) (0.45, -0.053, P = 0.27, N = 859)
rs3112842(C)/4:112386094 intergenic (0.88, -0.3, P = 9.5e-07, N = 1957) (0.94, 0.021, P = 0.83, N = 859)
rs12648879(T)/4:177900078* intergenic (0.7, -0.0098, P = 3.3e-05, N = 7365) (0.95, 0.036, P = 0.74, N = 859)
rs13101859(T)/4:189247182* intergenic (0.22, -0.01, P = 3.6e-05, N = 7365) (0.35, 0.048, P = 0.35, N = 859)
rs61261762(A)/4:23845240* PPARGC1A (0.014, 0.69, P = 5.8e-06, N = 1957) (0.065, -0.18, P = 0.064, N = 859)
rs7682064(T)/4:25087708* intergenic (0.71, 0.01, P = 2.2e-05, N = 7365) (0.65, 0.033, P = 0.5, N = 859)
rs6820352(C)/4:83644113 SCD5 (0.32, -0.16, P = 4.9e-07, N = 1957) (0.68, 0.0028, P = 0.96, N = 859)
rs327838(T)/5:125159259* intergenic (0.53, 0.0096, P = 3.3e-05, N = 7365) (0.48, 0.019, P = 0.69, N = 859)
rs58808503(A)/5:31913006 PDZD2 (0.14, -0.29, P = 8.7e-08, N = 1957) (0.02, 0.024, P = 0.89, N = 859)
rs10941232(A)/5:35054639* PRLR (0.71, -0.14, P = 9.7e-06, N = 1957) (0.57, 0.0024, P = 0.96, N = 859)
rs10051776(T)/5:39207781* FYB (0.046, -0.39, P = 7.5e-06, N = 1957) (0.088, 0.019, P = 0.83, N = 859)
rs2042342(T)/5:55969146 intergenic (0.97, 0.033, P = 2.3e-05, N = 1761) (0.88, -0.069, P = 0.35, N = 859)
rs10475426(T)/5:8362200* RP11-480D4.1 (0.99, -0.078, P = 2.9e-05, N = 1761) (0.82, -0.02, P = 0.75, N = 859)
rs827867(A)/6:158714489* RP11-732M18.3 (0.9, 0.014, P = 2.5e-05, N = 7365) (0.75, 0.016, P = 0.78, N = 859)
rs4706063(G)/6:79449874 intergenic (0.4, -0.16, P = 3.3e-06, N = 1957) (0.25, -0.041, P = 0.44, N = 859)
rs6976221(T)/7:127833995* intergenic (0.76, 0.01, P = 2.5e-05, N = 7365) (0.69, -0.025, P = 0.64, N = 859)
rs759167(T)/7:55127784 EGFR (0.2, -0.011, P = 1.5e-05, N = 7365) (0.27, 0.012, P = 0.83, N = 859)
rs723526(A)/7:55134819* EGFR (0.2, -0.011, P = 6.6e-06, N = 7365) (0.045, 0.029, P = 0.8, N = 859)
rs4718532(T)/7:66805000 RP11-166O4.5 (0.51, -0.016, P = 6.6e-06, N = 1761) (0.33, 0.065, P = 0.2, N = 859)
rs4841405(A)/8:10506235 RP1L1 (0.28, -0.011, P = 1.3e-05, N = 7365) (0.69, 0.0072, P = 0.89, N = 859)
rs13282889(G)/8:105847029* RP11-127H5.1 (0.34, 0.17, P = 8.6e-06, N = 1957) (0.2, -0.029, P = 0.64, N = 859)
rs1385495(T)/8:120077018* COLEC10 (0.81, 0.0099, P = 4.4e-05, N = 7365) (0.78, 0.028, P = 0.62, N = 859)
rs1551903(A)/8:54462119* intergenic (0.74, 0.01, P = 2.8e-05, N = 7365) (0.94, -0.021, P = 0.84, N = 859)
rs10435634(A)/8:54863001* RGS20 (0.56, -0.0095, P = 4.3e-05, N = 7365) (0.61, -0.073, P = 0.14, N = 859)
rs9298249(A)/8:76037728* intergenic (0.014, 0.04, P = 2.2e-05, N = 7365) (0.046, -0.15, P = 0.19, N = 859)
rs146976936(G)/9:77959488 intergenic (0.011, -0.73, P = 3.4e-06, N = 1957) (0.16, -0.13, P = 0.055, N = 859)
rs1876100(A)/9:81189702 intergenic (0.26, -0.011, P = 9.2e-06, N = 7365) (0.077, 0.019, P = 0.83, N = 859)
Results from Univariable Mendelian Randomization of L-Lactic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 80 0.05 (-0.052- 0.15) P=0.34 9.1 36 13 (0- 72) NA NA -0.0085 P=0.37
MR-Egger 80 0.083 (-0.042- 0.21) P=0.2 9.1 36 13 (0- 72) 91 0.15 -0.0085 P=0.37
Weighted median 80 0.0072 (-0.15- 0.16) P=0.93 9.1 36 13 (0- 72) NA NA -0.0085 P=0.37
Results from Univariable MRPRESSO of L-Lactic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.05 0.05 0.96 0.34
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Lactic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 33 0.12 (0.00058- 0.24) P=0.049 16 27 17.5 (0- 71.2) NA NA -0.027 P=0.11
MR-Egger 33 0.22 (0.053- 0.38) P=0.014 16 27 17.5 (0- 71.2) 34 0.33 -0.027 P=0.11
Weighted median 33 0.13 (-0.057- 0.31) P=0.18 16 27 17.5 (0- 71.2) NA NA -0.027 P=0.11
Results from Univariable MRPRESSO of L-Lactic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.12 0.06 1.97 0.06
beta.exposure Outlier-corrected NA NA NA NA

Oxalic acid

Instruments Associations with Oxalic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Oxalic acid (Shin et al/Long et al) eGFR (CSSCD)
rs1938451(G)/1:68364218* GNG12-AS1 (0.69, -0.19, P = 1e-06, N = 1957) (0.81, -0.052, P = 0.4, N = 859)
rs12279359(A)/11:130730544 RP11-890B15.2 (0.4, -0.16, P = 2.1e-06, N = 1957) (0.35, -0.063, P = 0.22, N = 859)
rs12419619(T)/11:5952146 TRIM5 (0.46, 0.17, P = 1.3e-06, N = 1957) (0.18, 0.065, P = 0.3, N = 859)
rs113046166(T)/11:62222568* AHNAK (0.14, -0.21, P = 7e-06, N = 1957) (0.07, 0.023, P = 0.81, N = 859)
rs7119319(T)/11:90384749* DISC1FP1 (0.18, 0.22, P = 2.2e-06, N = 1957) (0.49, 0.012, P = 0.8, N = 859)
rs527373600(CAAAAA)/13:111174762 RAB20 (0.024, -0.22, P = 8.8e-06, N = 1957) (0.34, -0.0022, P = 0.97, N = 859)
rs796188220(CT)/13:72333063 DACH1 (0.028, -0.37, P = 2.6e-06, N = 1957) (0.84, -0.083, P = 0.21, N = 859)
rs753041(T)/13:99000485* FARP1 (0.33, -0.17, P = 8.1e-06, N = 1957) (0.11, 0.012, P = 0.87, N = 859)
rs35432338(C)/15:60595448 intergenic (0.4, 0.12, P = 8.3e-06, N = 1957) (0.4, -0.015, P = 0.76, N = 859)
rs72803825(T)/16:77506227 intergenic (0.13, -0.28, P = 4.4e-06, N = 1957) (0.026, 0.032, P = 0.83, N = 859)
rs2289470(A)/2:135214259* TMEM163 (0.16, -0.18, P = 5.8e-06, N = 1957) (0.28, 0.032, P = 0.56, N = 859)
rs4814550(T)/20:16733848 OTOR (0.17, -0.16, P = 3.5e-06, N = 1957) (0.039, 0.026, P = 0.84, N = 859)
rs34230332(G)/3:14725878 C3orf20 (0.076, 0.24, P = 3.7e-06, N = 1957) (0.02, -0.44, P = 0.011, N = 859)
rs6444594(T)/3:191661608 intergenic (0.43, -0.18, P = 4.1e-07, N = 1957) (0.51, -0.016, P = 0.73, N = 859)
rs11132006(C)/4:181512510 intergenic (0.31, -0.18, P = 1.7e-06, N = 1957) (0.28, 0.026, P = 0.64, N = 859)
rs73793418(C)/6:169685826 XXyac-YX65C7_A.3 (0.06, -0.29, P = 1.9e-06, N = 1957) (0.14, 0.052, P = 0.44, N = 859)
rs9477739(T)/6:18422473* RNF144B (0.044, 0.36, P = 7.6e-07, N = 1957) (0.14, 0.082, P = 0.24, N = 859)
rs199549415(A)/6:24291915 DCDC2 (0.1, -0.29, P = 5.2e-06, N = 1957) (0.02, -0.15, P = 0.39, N = 859)
rs116315297(A)/6:24414380 MRS2 (0.011, 0.97, P = 5.4e-07, N = 1957) (0.031, -0.053, P = 0.71, N = 859)
rs77760991(G)/6:72039148 RP3-331H24.5 (0.075, -0.26, P = 1.2e-06, N = 1957) (0.056, 0.0069, P = 0.95, N = 859)
rs58349860(A)/7:143024197* CLCN1 (0.34, -0.18, P = 6.3e-06, N = 1957) (0.45, -0.021, P = 0.67, N = 859)
rs567931256(CT)/8:1177501 CTD-2281E23.2 (0.013, -0.69, P = 8.5e-06, N = 1957) (0.098, 0.078, P = 0.32, N = 859)
rs6992200(C)/8:1835183 ARHGEF10 (0.022, 0.45, P = 9.3e-06, N = 1957) (0.08, 0.084, P = 0.35, N = 859)
Results from Univariable Mendelian Randomization of Oxalic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 23 0.023 (-0.067- 0.11) P=0.62 23 27 1.82e-05 (0- 48.6) NA NA 0.019 P=0.51
MR-Egger 23 -0.039 (-0.25- 0.17) P=0.72 23 27 1.82e-05 (0- 48.6) 17 0.74 0.019 P=0.51
Weighted median 23 -0.032 (-0.18- 0.11) P=0.66 23 27 1.82e-05 (0- 48.6) NA NA 0.019 P=0.51
Results from Univariable MRPRESSO of Oxalic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.02 0.05 0.5 0.62
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Oxalic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 16 -2e-04 (-0.11- 0.11) P=1 22 18 0.000204 (0- 80.2) NA NA 0.024 P=0.48
MR-Egger 16 -0.068 (-0.28- 0.15) P=0.55 22 18 0.000204 (0- 80.2) 14 0.46 0.024 P=0.48
Weighted median 16 -0.06 (-0.23- 0.11) P=0.49 22 18 0.000204 (0- 80.2) NA NA 0.024 P=0.48
Results from Univariable MRPRESSO of Oxalic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.06 0 1
beta.exposure Outlier-corrected NA NA NA NA

Pantothenic acid

Instruments Associations with Pantothenic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Pantothenic acid (Shin et al/Long et al) eGFR (CSSCD)
rs10919047(A)/1:169033499 LINC00970 (0.14, 0.018, P = 6.8e-07, N = 7160) (0.039, -0.17, P = 0.17, N = 859)
rs3949865(C)/1:183930806* COLGALT2 (0.62, -0.011, P = 9.5e-06, N = 7160) (0.34, 0.019, P = 0.7, N = 859)
rs553719(C)/1:37332937* GRIK3 (0.93, 0.34, P = 2.7e-06, N = 1953) (0.83, 0.017, P = 0.8, N = 859)
rs1998432(A)/10:10743956 intergenic (0.52, -0.011, P = 3.7e-05, N = 7160) (0.35, -0.059, P = 0.24, N = 859)
rs12242254(A)/10:19369100 intergenic (0.69, 0.011, P = 1.6e-05, N = 7160) (0.92, -0.17, P = 0.068, N = 859)
rs2457214(T)/10:50015097 WDFY4 (0.63, -0.011, P = 1.3e-05, N = 7160) (0.35, 0.065, P = 0.19, N = 859)
rs79209616(T)/10:67616849 intergenic (0.059, 0.41, P = 3.1e-06, N = 1953) (0.41, -0.092, P = 0.061, N = 859)
rs4746017(A)/10:71774872* intergenic (0.71, -0.012, P = 5.1e-06, N = 7160) (0.77, -0.056, P = 0.31, N = 859)
rs554027365(CT)/10:86169332 CCSER2 (0.11, 0.28, P = 1.4e-08, N = 1953) (0.16, 0.03, P = 0.64, N = 859)
rs2636805(T)/10:98927016 SLIT1 (0.53, -0.011, P = 3.2e-05, N = 7160) (0.27, -0.081, P = 0.14, N = 859)
rs3781966(A)/11:61956428 SCGB1D1 (0.31, -0.024, P = 2.4e-05, N = 1650) (0.65, -0.036, P = 0.47, N = 859)
rs78668216(T)/11:75873779 intergenic (0.055, -0.39, P = 9.1e-06, N = 1953) (0.019, 0.2, P = 0.25, N = 859)
rs7296705(T)/12:3374675 TSPAN9 (0.83, 0.014, P = 4.2e-05, N = 7160) (0.61, 0.0082, P = 0.87, N = 859)
rs11175024(A)/12:40463950 SLC2A13 (0.59, 0.011, P = 1.9e-05, N = 7160) (0.65, -0.037, P = 0.48, N = 859)
rs9788090(C)/12:67889960* intergenic (0.73, 0.015, P = 1.2e-05, N = 7160) (0.22, 0.075, P = 0.19, N = 859)
rs73133802(A)/12:68038605 DYRK2 (0.054, -0.28, P = 3.6e-06, N = 1953) (0.07, -0.04, P = 0.68, N = 859)
rs1163004(T)/12:81079471 intergenic (0.85, -0.014, P = 3.4e-05, N = 7160) (0.25, 0.0081, P = 0.88, N = 859)
rs199931900(A)/13:107397379 intergenic (0.28, -0.23, P = 2.6e-06, N = 1953) (0.065, -0.0089, P = 0.93, N = 859)
rs9514571(T)/13:107405459 intergenic (0.28, -0.23, P = 6.4e-06, N = 1953) (0.049, -0.051, P = 0.65, N = 859)
rs2183242(C)/13:21271776* IL17D (0.041, 0.029, P = 2.3e-05, N = 7160) (0.11, 0.024, P = 0.76, N = 859)
rs17082600(T)/13:26228314* ATP8A2 (0.019, 0.048, P = 4.1e-07, N = 7160) (0.068, 0.047, P = 0.63, N = 859)
rs9524526(T)/13:95150472 intergenic (0.34, 0.011, P = 2.9e-05, N = 7160) (0.3, 0.0025, P = 0.96, N = 859)
rs7997736(T)/13:98438292 intergenic (0.76, 0.024, P = 3.9e-05, N = 1650) (0.42, -0.049, P = 0.31, N = 859)
rs2346674(A)/14:57795057 intergenic (0.16, 0.015, P = 2.4e-05, N = 7160) (0.027, -0.069, P = 0.65, N = 859)
rs17751805(A)/14:65034363* PPP1R36 (0.96, 0.063, P = 3.4e-06, N = 1650) (0.93, -0.21, P = 0.026, N = 859)
rs2268984(C)/14:69408567 ACTN1 (0.91, 0.02, P = 2.4e-05, N = 7160) (0.94, 0.088, P = 0.39, N = 859)
rs4904868(T)/14:92781001 intergenic (0.44, -0.011, P = 1.4e-05, N = 7160) (0.8, 0.037, P = 0.54, N = 859)
rs7166370(C)/15:60959089* RORA (0.43, 0.012, P = 5.2e-06, N = 7160) (0.25, 0.014, P = 0.8, N = 859)
rs8039191(C)/15:66406574 MEGF11 (0.53, -0.15, P = 3.4e-06, N = 1953) (0.64, 0.0024, P = 0.96, N = 859)
rs1561886(A)/15:71497130* THSD4 (0.067, -0.041, P = 3.1e-05, N = 1650) (0.14, 0.13, P = 0.065, N = 859)
rs8023317(A)/15:86541098 intergenic (0.31, 0.011, P = 3.5e-05, N = 7160) (0.54, 0.006, P = 0.9, N = 859)
rs1975271(T)/16:9497663* RP11-243A14.1 (0.59, 0.012, P = 8.7e-06, N = 7160) (0.89, -0.049, P = 0.51, N = 859)
rs432432(C)/17:15225813* TEKT3 (0.61, -0.011, P = 3.2e-05, N = 7160) (0.8, 0.013, P = 0.82, N = 859)
rs2526477(A)/17:20131193* SPECC1 (0.61, -0.012, P = 3e-06, N = 7160) (0.58, 0.082, P = 0.088, N = 859)
rs2671822(T)/17:33597682 SLFN5 (0.65, -0.011, P = 2.6e-05, N = 7160) (0.86, -0.027, P = 0.69, N = 859)
rs8065435(A)/17:56157617* DYNLL2 (0.33, -0.013, P = 5e-06, N = 7160) (0.066, 0.02, P = 0.84, N = 859)
rs12951496(T)/17:6955671 intergenic (0.87, -0.018, P = 1.7e-05, N = 7160) (0.82, -0.018, P = 0.78, N = 859)
rs4789816(A)/17:80607830 WDR45B (0.33, 0.011, P = 3.5e-05, N = 7160) (0.11, 0.072, P = 0.36, N = 859)
rs74580079(G)/18:6776863 ARHGAP28 (0.048, 0.4, P = 8e-06, N = 1953) (0.016, 0.072, P = 0.71, N = 859)
rs3865404(T)/18:755862 YES1 (0.49, -0.021, P = 3.7e-05, N = 1650) (0.69, -0.015, P = 0.78, N = 859)
rs2967437(A)/19:37086645 AC092295.7 (0.69, -0.013, P = 1.9e-06, N = 7160) (0.79, 0.017, P = 0.77, N = 859)
rs7574257(T)/2:105988447* FHL2 (0.33, 0.012, P = 7.8e-06, N = 7160) (0.2, 0.047, P = 0.45, N = 859)
rs12617095(A)/2:134762590 intergenic (0.039, 0.054, P = 3.2e-05, N = 1650) (0.12, 0.12, P = 0.11, N = 859)
rs1607363(T)/2:156670123* intergenic (0.72, 0.011, P = 3.5e-05, N = 7160) (0.7, -0.052, P = 0.33, N = 859)
rs839524(T)/2:212815801 ERBB4 (0.12, 0.019, P = 8.5e-06, N = 7160) (0.11, 0.13, P = 0.087, N = 859)
rs10185729(T)/2:212842777* ERBB4 (0.86, -0.015, P = 2.1e-05, N = 7160) (0.58, -0.026, P = 0.6, N = 859)
rs1395(A)/2:27424636* SLC5A6 (0.7, 0.017, P = 8.1e-11, N = 7160) (0.23, -0.14, P = 0.019, N = 859)
rs17049936(T)/2:59346812* intergenic (0.89, -0.019, P = 9.6e-06, N = 7160) (0.98, 0.37, P = 0.052, N = 859)
rs12614153(A)/2:99502489 KIAA1211L (0.02, -0.041, P = 1.1e-05, N = 7160) (0.023, 0.092, P = 0.57, N = 859)
rs16996604(C)/20:15792861* MACROD2 (0.97, -0.053, P = 7.2e-06, N = 1650) (0.92, 0.062, P = 0.49, N = 859)
rs6034318(A)/20:15863999* MACROD2 (0.013, 0.11, P = 4.5e-06, N = 1650) (0.11, -0.042, P = 0.58, N = 859)
rs6078500(T)/20:182013* intergenic (0.51, -0.012, P = 4.5e-06, N = 7160) (0.49, 0.12, P = 0.01, N = 859)
rs7280622(A)/21:39417006* DSCR4 (0.7, -0.011, P = 4.3e-05, N = 7160) (0.87, -0.0057, P = 0.94, N = 859)
rs760130(C)/21:41356039 intergenic (0.69, -0.12, P = 4.9e-06, N = 1953) (0.9, -0.14, P = 0.087, N = 859)
rs762407(A)/21:45181446 PDXK (0.3, -0.011, P = 2e-05, N = 7160) (0.38, -0.011, P = 0.83, N = 859)
rs2330959(T)/22:25343430 TMEM211 (0.14, -0.24, P = 7.3e-06, N = 1953) (0.024, 0.12, P = 0.44, N = 859)
rs1350858(A)/3:109874627 intergenic (0.18, 0.015, P = 8.2e-06, N = 7160) (0.36, -0.056, P = 0.26, N = 859)
rs1282954(T)/3:111627743 PHLDB2 (0.98, -0.14, P = 7.1e-07, N = 1650) (0.89, -0.013, P = 0.86, N = 859)
rs2173615(T)/3:191673577* RP11-655G22.2 (0.32, 0.013, P = 1.7e-06, N = 7160) (0.27, -0.048, P = 0.38, N = 859)
rs11719633(A)/3:20402881 intergenic (0.095, -0.021, P = 3e-06, N = 7160) (0.02, -0.22, P = 0.2, N = 859)
rs13091209(A)/3:24958459* AC133680.1 (0.84, 0.014, P = 2.8e-05, N = 7160) (0.93, -0.071, P = 0.46, N = 859)
rs6774965(A)/3:27548813* intergenic (0.86, -0.016, P = 3.2e-06, N = 7160) (0.76, 0.019, P = 0.74, N = 859)
rs11374874(CT)/3:46776965 PRSS50 (0.045, 0.31, P = 6.2e-06, N = 1953) (0.31, 0.032, P = 0.54, N = 859)
rs9813765(T)/3:4896746 AC018816.3 (0.92, 0.02, P = 3.3e-05, N = 7160) (0.76, -0.063, P = 0.27, N = 859)
rs7634314(A)/3:61464280 intergenic (0.31, 0.011, P = 2e-05, N = 7160) (0.21, -0.076, P = 0.21, N = 859)
rs75342462(T)/3:61547164 PTPRG (0.27, 0.17, P = 3.3e-06, N = 1953) (0.13, 0.0054, P = 0.94, N = 859)
rs10510382(T)/3:7997953* LMCD1-AS1 (0.79, -0.015, P = 1.1e-05, N = 7160) (0.89, -0.043, P = 0.57, N = 859)
rs6848070(A)/4:127862814* intergenic (0.35, -0.012, P = 9.9e-06, N = 7160) (0.1, 0.13, P = 0.12, N = 859)
rs795365(A)/4:140485914 SETD7 (0.73, -0.014, P = 2.5e-05, N = 7160) (0.44, 0.047, P = 0.34, N = 859)
rs4692562(T)/4:169990660 intergenic (0.66, -0.027, P = 1.9e-05, N = 1650) (0.62, -0.033, P = 0.5, N = 859)
rs10012798(T)/4:169993004 intergenic (0.67, -0.024, P = 1.4e-05, N = 1650) (0.7, -0.00084, P = 0.99, N = 859)
rs10520541(C)/4:183680605* TENM3 (0.83, 0.014, P = 3.4e-05, N = 7160) (0.9, -0.058, P = 0.48, N = 859)
rs6837566(G)/4:186789501 SORBS2 (0.098, 0.26, P = 6.9e-06, N = 1953) (0.094, 0.06, P = 0.46, N = 859)
rs10024571(C)/4:188772103* intergenic (0.98, -0.082, P = 1.6e-05, N = 1650) (0.97, 0.068, P = 0.61, N = 859)
rs1895918(T)/4:37111619* RP11-103J17.1 (0.56, 0.12, P = 8.4e-06, N = 1953) (0.26, 0.11, P = 0.049, N = 859)
rs2457411(T)/4:48244026* TEC (0.3, 0.011, P = 1.9e-05, N = 7160) (0.052, 0.14, P = 0.18, N = 859)
rs12522179(A)/5:101403134* intergenic (0.82, -0.028, P = 3.8e-05, N = 1650) (0.58, -0.057, P = 0.23, N = 859)
rs4078252(T)/5:112455467* MCC (0.32, -0.011, P = 3.9e-05, N = 7160) (0.13, 0.023, P = 0.75, N = 859)
rs2605200(T)/5:114751410 intergenic (0.22, -0.016, P = 2.1e-05, N = 7160) (0.31, -0.016, P = 0.75, N = 859)
rs248063(A)/5:126500208* intergenic (0.5, -0.024, P = 2.4e-06, N = 1650) (0.68, 0.089, P = 0.082, N = 859)
rs271072(A)/5:144532826 intergenic (0.38, -0.012, P = 5.9e-06, N = 7160) (0.25, 0.0073, P = 0.9, N = 859)
rs726550(T)/5:144668820* intergenic (0.33, 0.011, P = 3.7e-05, N = 7160) (0.58, -0.069, P = 0.15, N = 859)
rs6873171(A)/5:145305766* intergenic (0.065, 0.041, P = 4.5e-05, N = 1650) (0.24, -0.065, P = 0.25, N = 859)
rs1994860(G)/5:152989323 GRIA1 (0.28, 0.19, P = 6.1e-06, N = 1953) (0.1, 0.079, P = 0.31, N = 859)
rs2255493(T)/5:153432970 MFAP3 (0.63, -0.011, P = 3.8e-05, N = 7160) (0.65, 0.04, P = 0.44, N = 859)
rs31705(C)/5:154683887* intergenic (0.33, 0.012, P = 1e-05, N = 7160) (0.39, -0.046, P = 0.36, N = 859)
rs10051445(G)/5:82356099 TMEM167A (0.45, 0.16, P = 5.2e-07, N = 1953) (0.59, 0.0014, P = 0.98, N = 859)
rs1674726(A)/6:153858614* intergenic (0.35, -0.011, P = 4e-05, N = 7160) (0.29, -0.034, P = 0.53, N = 859)
rs6557395(A)/6:155369261 TIAM2 (0.83, -0.015, P = 2.9e-05, N = 7160) (0.88, 0.032, P = 0.67, N = 859)
rs9365106(A)/6:160282834* intergenic (0.68, -0.012, P = 8.1e-06, N = 7160) (0.54, -0.059, P = 0.24, N = 859)
rs960295(T)/6:1726623 GMDS (0.25, -0.025, P = 1.3e-05, N = 1650) (0.084, 0.0017, P = 0.98, N = 859)
rs7774567(A)/6:25425526* LRRC16A (0.083, 0.02, P = 1.8e-05, N = 7160) (0.11, -0.015, P = 0.84, N = 859)
rs13212846(A)/6:50301100 intergenic (0.93, -0.024, P = 2.9e-06, N = 7160) (0.99, 0.21, P = 0.3, N = 859)
rs17141663(T)/6:6063348* intergenic (0.074, -0.021, P = 4.4e-05, N = 7160) (0.072, 0.16, P = 0.091, N = 859)
rs9649040(T)/7:131859395 PLXNA4 (0.12, -0.017, P = 4.3e-05, N = 7160) (0.082, -0.00026, P = 1, N = 859)
rs192735620(T)/7:152543295 ACTR3B (0.012, 0.63, P = 5.8e-06, N = 1953) (0.02, -0.2, P = 0.25, N = 859)
rs754554(T)/7:24758818 DFNA5 (0.15, 0.015, P = 2e-05, N = 7160) (0.21, 0.012, P = 0.84, N = 859)
rs7458704(T)/7:67422093 intergenic (0.98, -0.054, P = 5.6e-07, N = 7160) (0.84, -0.095, P = 0.15, N = 859)
rs17158882(T)/7:83963481* SEMA3A (0.91, -0.024, P = 3.9e-05, N = 7160) (0.92, 0.11, P = 0.25, N = 859)
rs1034495(A)/8:111157151 intergenic (0.7, 0.011, P = 4.2e-05, N = 7160) (0.93, 0.022, P = 0.82, N = 859)
rs283734(G)/8:128270368 intergenic (0.22, -0.15, P = 7.2e-06, N = 1953) (0.5, -0.0055, P = 0.91, N = 859)
rs4269521(A)/8:132358549* intergenic (0.84, 0.017, P = 1e-06, N = 7160) (0.95, 0.18, P = 0.13, N = 859)
rs12544560(A)/8:21368451 intergenic (0.15, 0.016, P = 3.3e-06, N = 7160) (0.065, -0.015, P = 0.88, N = 859)
rs2979166(A)/8:8228245 SGK223 (0.47, 0.011, P = 1.5e-05, N = 7160) (0.74, 0.094, P = 0.092, N = 859)
rs7009776(T)/8:90373191 intergenic (0.33, -0.027, P = 7.1e-06, N = 1650) (0.23, 0.0098, P = 0.87, N = 859)
rs17771752(T)/9:28195226* LINGO2 (0.049, 0.025, P = 2e-05, N = 7160) (0.023, -0.0049, P = 0.98, N = 859)
rs700978(A)/9:98496807* intergenic (0.31, -0.014, P = 1.9e-05, N = 7160) (0.5, 0.069, P = 0.15, N = 859)
Results from Univariable Mendelian Randomization of Pantothenic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 107 -0.027 (-0.15- 0.096) P=0.67 4.9 25 1.06 (0- 81.2) NA NA -0.01 P=0.16
MR-Egger 107 0.024 (-0.12- 0.17) P=0.74 4.9 25 1.06 (0- 81.2) 109 0.38 -0.01 P=0.16
Weighted median 107 0.04 (-0.14- 0.22) P=0.67 4.9 25 1.06 (0- 81.2) NA NA -0.01 P=0.16
Results from Univariable MRPRESSO of Pantothenic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.06 -0.43 0.67
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Pantothenic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 62 -0.021 (-0.14- 0.093) P=0.72 7.4 23 2.08 (0- 20.7) NA NA 0.005 P=0.6
MR-Egger 62 -0.044 (-0.2- 0.11) P=0.58 7.4 23 2.08 (0- 20.7) 47 0.88 0.005 P=0.6
Weighted median 62 0.035 (-0.16- 0.23) P=0.72 7.4 23 2.08 (0- 20.7) NA NA 0.005 P=0.6
Results from Univariable MRPRESSO of Pantothenic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.02 0.06 -0.36 0.72
beta.exposure Outlier-corrected NA NA NA NA

L-Phenylalanine

Instruments Associations with L-Phenylalanine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Phenylalanine (Shin et al/Long et al) eGFR (CSSCD)
rs10913071(A)/1:175712239 TNR (0.22, -0.0051, P = 2.8e-05, N = 7824) (0.1, 0.2, P = 0.014, N = 859)
rs149766(T)/1:57642394* DAB1 (0.071, -0.0099, P = 2.6e-05, N = 7824) (0.012, -0.33, P = 0.14, N = 859)
rs1865020(A)/10:78688976 KCNMA1 (0.33, 0.0049, P = 3.2e-05, N = 7824) (0.52, -0.037, P = 0.45, N = 859)
rs628223(A)/11:82968164* CCDC90B (0.69, 0.0048, P = 4.3e-05, N = 7824) (0.86, 0.016, P = 0.82, N = 859)
rs1498694(A)/12:103257876* PAH (0.4, 0.0075, P = 7.3e-11, N = 7824) (0.32, 0.08, P = 0.12, N = 859)
rs11066801(T)/12:114319498* RBM19 (0.2, -0.0092, P = 4.8e-05, N = 7824) (0.18, -0.0018, P = 0.98, N = 859)
rs1163900(A)/12:17612617* intergenic (0.26, -0.0054, P = 1e-05, N = 7824) (0.44, -0.018, P = 0.72, N = 859)
rs12370281(C)/12:98249633* intergenic (0.7, -0.0048, P = 4.9e-05, N = 7824) (0.59, -0.088, P = 0.072, N = 859)
rs17300024(A)/13:93913236* GPC6 (0.99, -0.037, P = 2.9e-05, N = 7824) (0.95, -0.069, P = 0.54, N = 859)
rs10145453(T)/14:63735954* RHOJ (0.81, -0.0051, P = 4.7e-05, N = 7824) (0.47, 0.11, P = 0.021, N = 859)
rs16975959(T)/15:96564721* intergenic (0.99, -0.035, P = 2e-05, N = 7824) (0.93, -0.034, P = 0.71, N = 859)
rs12598787(A)/16:77403469* ADAMTS18 (0.88, -0.0089, P = 1.6e-05, N = 7824) (0.98, 0.14, P = 0.39, N = 859)
rs10445272(A)/17:12621782* MYOCD (0.21, 0.0051, P = 3.7e-05, N = 7824) (0.43, -0.0084, P = 0.86, N = 859)
rs2905873(A)/17:29532356* NF1 (0.69, 0.0055, P = 3e-06, N = 7824) (0.94, -0.0093, P = 0.93, N = 859)
rs1468260(A)/17:39052931* intergenic (0.49, -0.0053, P = 3.5e-05, N = 7824) (0.82, -0.012, P = 0.85, N = 859)
rs6736106(C)/2:217328446* SMARCAL1 (0.2, 0.0053, P = 2.1e-05, N = 7824) (0.5, 0.051, P = 0.31, N = 859)
rs10050054(T)/4:178647306* LINC01098 (0.98, -0.033, P = 2.6e-06, N = 7824) (0.67, 0.11, P = 0.029, N = 859)
rs1872445(T)/4:186504058* SORBS2 (0.55, -0.0049, P = 1.9e-05, N = 7824) (0.87, 0.068, P = 0.34, N = 859)
rs4863027(T)/4:190729688* AF146191.4 (0.96, -0.019, P = 4.3e-05, N = 7824) (0.82, 0.086, P = 0.17, N = 859)
rs6831907(T)/4:190761715 AF146191.4 (0.04, 0.021, P = 7.1e-06, N = 7824) (0.04, 0.13, P = 0.27, N = 859)
rs17732494(T)/5:56301267 intergenic (0.46, 0.0076, P = 4.7e-05, N = 7824) (0.63, 0.034, P = 0.51, N = 859)
rs899855(A)/6:130094673* intergenic (0.93, -0.0097, P = 1.4e-05, N = 7824) (0.93, -0.032, P = 0.73, N = 859)
rs7764865(T)/6:42835487 GLTSCR1L (0.059, 0.012, P = 3.9e-05, N = 7824) (0.51, -0.05, P = 0.31, N = 859)
rs2613565(A)/6:95894399 intergenic (0.64, 0.0084, P = 4.5e-05, N = 7824) (0.59, -0.091, P = 0.068, N = 859)
rs2456946(C)/7:113200934* intergenic (0.023, 0.033, P = 4.7e-05, N = 7824) (0.047, -0.077, P = 0.5, N = 859)
rs12706142(A)/7:116775046* ST7 (0.77, -0.0052, P = 2.9e-05, N = 7824) (0.97, 0.029, P = 0.83, N = 859)
rs6965127(A)/7:42866718 AC010132.10 (0.34, -0.005, P = 2.4e-05, N = 7824) (0.051, -0.064, P = 0.54, N = 859)
rs1565225(A)/8:85687107* RALYL (0.24, 0.007, P = 2.3e-06, N = 7824) (0.58, -0.055, P = 0.27, N = 859)
rs12001237(C)/9:115854670 intergenic (0.91, 0.0082, P = 3.5e-05, N = 7824) (0.98, 0.3, P = 0.081, N = 859)
rs944982(T)/9:119847448* ASTN2 (0.11, 0.013, P = 1.1e-05, N = 7824) (0.063, 0.1, P = 0.3, N = 859)
Results from Univariable Mendelian Randomization of L-Phenylalanine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 30 -1.5 (-3.6- 0.62) P=0.16 0.15 0.057 9.11 (0- 77.2) NA NA 0.0016 P=0.94
MR-Egger 30 -1.6 (-4.9- 1.7) P=0.35 0.15 0.057 9.11 (0- 77.2) 40 0.072 0.0016 P=0.94
Weighted median 30 -2.6 (-5.3- 0.16) P=0.065 0.15 0.057 9.11 (0- 77.2) NA NA 0.0016 P=0.94
Results from Univariable MRPRESSO of L-Phenylalanine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -1.5 1.08 -1.39 0.18
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Phenylalanine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 8 -2.4 (-9.7- 4.8) P=0.51 0.15 0.015 41.8 (0- 87.8) NA NA -0.087 P=0.35
MR-Egger 8 6.6 (-12- 26) P=0.52 0.15 0.015 41.8 (0- 87.8) 13 0.044 -0.087 P=0.35
Weighted median 8 -2.3 (-9.5- 4.9) P=0.53 0.15 0.015 41.8 (0- 87.8) NA NA -0.087 P=0.35
Results from Univariable MRPRESSO of L-Phenylalanine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -2.44 3.72 -0.66 0.53
beta.exposure Outlier-corrected NA NA NA NA

L-Proline

Instruments Associations with L-Proline & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Proline (Shin et al/Long et al) eGFR (CSSCD)
rs773585(T)/1:113841023* intergenic (0.65, 0.0076, P = 1.9e-05, N = 7824) (0.91, 0.08, P = 0.34, N = 859)
rs11802885(A)/1:113896872 intergenic (0.36, 0.0098, P = 2.3e-08, N = 7824) (0.25, 0.029, P = 0.6, N = 859)
rs17492329(T)/1:202461103 PPP1R12B (0.78, -0.011, P = 2.4e-05, N = 7824) (0.97, 0.27, P = 0.044, N = 859)
rs2993536(A)/1:212154930 INTS7 (0.97, 0.021, P = 3.5e-05, N = 7824) (0.91, -0.12, P = 0.18, N = 859)
rs587043(T)/1:226797522* C1orf95 (0.33, -0.0077, P = 1.3e-05, N = 7824) (0.23, 0.023, P = 0.7, N = 859)
rs10495434(T)/1:239473965* intergenic (0.079, -0.015, P = 3.2e-05, N = 7824) (0.16, -0.0096, P = 0.88, N = 859)
rs1888182(T)/1:54967890 AC099796.1 (0.42, 0.0079, P = 7.9e-06, N = 7824) (0.14, 0.032, P = 0.65, N = 859)
rs852767(G)/1:58287224 DAB1 (0.36, 0.18, P = 9.2e-06, N = 1957) (0.12, 0.045, P = 0.55, N = 859)
rs34821139(T)/1:61645881* NFIA (0.098, 0.23, P = 4.1e-06, N = 1957) (0.02, 0.14, P = 0.43, N = 859)
rs7546702(T)/1:93948403* FNBP1L (0.56, -0.15, P = 4.2e-06, N = 1957) (0.12, -0.096, P = 0.19, N = 859)
rs11192397(G)/10:107070578* intergenic (0.15, -0.27, P = 9.1e-06, N = 1957) (0.026, 0.041, P = 0.79, N = 859)
rs532728(C)/10:129652583* intergenic (0.61, 0.0074, P = 3e-05, N = 7824) (0.71, -0.033, P = 0.54, N = 859)
rs112873694(AT)/10:18655806 CACNB2 (0.056, 0.47, P = 3.6e-06, N = 1957) (0.08, -0.044, P = 0.63, N = 859)
rs12243290(A)/10:66938581* intergenic (0.9, -0.016, P = 4e-06, N = 7824) (0.76, -0.012, P = 0.83, N = 859)
rs10887554(A)/10:87824238 GRID1 (0.53, 0.0072, P = 3.9e-05, N = 7824) (0.25, 0.11, P = 0.042, N = 859)
rs10905627(G)/10:9905850 intergenic (0.74, 0.19, P = 2.8e-06, N = 1957) (0.45, -0.062, P = 0.2, N = 859)
rs4755121(A)/11:105804856 GRIA4 (0.084, 0.015, P = 2.3e-05, N = 7824) (0.025, 0.019, P = 0.9, N = 859)
rs1371674(T)/11:40531941 LRRC4C (0.59, -0.0076, P = 1.9e-05, N = 7824) (0.52, 0.013, P = 0.8, N = 859)
rs10501294(T)/11:43086410 RP11-111A24.2 (0.87, -0.012, P = 3.1e-06, N = 7824) (0.97, -0.13, P = 0.35, N = 859)
rs535633(A)/11:92825738* intergenic (0.58, -0.0086, P = 1e-06, N = 7824) (0.65, 0.023, P = 0.66, N = 859)
rs562808(T)/11:95961049* MAML2 (0.61, -0.0076, P = 1.8e-05, N = 7824) (0.37, 0.0017, P = 0.97, N = 859)
rs7296105(A)/12:117842549 NOS1 (0.88, 0.026, P = 2.3e-06, N = 7824) (0.45, 0.046, P = 0.36, N = 859)
rs11183620(A)/12:47212370* SLC38A4 (0.47, 0.0082, P = 2.3e-06, N = 7824) (0.8, -0.00048, P = 0.99, N = 859)
rs7958568(T)/12:47431496* intergenic (0.47, 0.0078, P = 8.9e-06, N = 7824) (0.62, -0.027, P = 0.59, N = 859)
rs4082475(A)/12:52907240 KRT5 (0.13, 0.011, P = 2e-05, N = 7824) (0.2, -0.032, P = 0.6, N = 859)
rs10783990(A)/12:59976616 RNU4-20P (0.64, 0.0072, P = 4.2e-05, N = 7824) (0.75, 0.0032, P = 0.95, N = 859)
rs10747856(A)/12:60262116 intergenic (0.52, -0.0079, P = 6e-06, N = 7824) (0.44, 0.11, P = 0.022, N = 859)
rs950755(T)/12:61227957* intergenic (0.86, -0.012, P = 8.5e-06, N = 7824) (0.7, 0.036, P = 0.49, N = 859)
rs2278823(A)/12:7288734* CLSTN3 (0.14, -0.011, P = 4.8e-05, N = 7824) (0.2, 0.032, P = 0.59, N = 859)
rs3132360(A)/13:26297093 ATP8A2 (0.21, -0.011, P = 2.1e-05, N = 7824) (0.2, -0.071, P = 0.23, N = 859)
rs17245120(A)/13:31319133 ALOX5AP (0.072, 0.027, P = 4.8e-05, N = 7824) (0.044, 0.029, P = 0.81, N = 859)
rs993158(T)/13:62992697 intergenic (0.86, 0.011, P = 1.5e-05, N = 7824) (0.48, -0.012, P = 0.81, N = 859)
rs2449697(T)/13:64025289 intergenic (0.66, 0.0072, P = 4.9e-05, N = 7824) (0.5, 0.072, P = 0.14, N = 859)
rs9540462(T)/13:66100680 intergenic (0.88, -0.012, P = 4.8e-06, N = 7824) (0.89, -0.0067, P = 0.93, N = 859)
rs9523512(T)/13:92775592* GPC5 (0.47, 0.0077, P = 1.3e-05, N = 7824) (0.8, -0.042, P = 0.49, N = 859)
rs10431644(T)/14:103694331 intergenic (0.028, 0.45, P = 1.9e-06, N = 1957) (0.077, -0.1, P = 0.27, N = 859)
rs62008719(C)/14:103698656 intergenic (0.028, 0.45, P = 1.5e-06, N = 1957) (0.11, -0.16, P = 0.047, N = 859)
rs2101244(A)/14:42848284 CTD-2307P3.1 (0.024, 0.66, P = 4.8e-06, N = 1957) (0.14, 0.045, P = 0.51, N = 859)
rs12889337(T)/14:46784593* LINC00871 (0.36, 0.0077, P = 1.5e-05, N = 7824) (0.82, 0.0092, P = 0.89, N = 859)
rs11848063(A)/14:47235445* intergenic (0.59, 0.0087, P = 7.1e-07, N = 7824) (0.44, -0.028, P = 0.57, N = 859)
rs12901694(A)/15:87326551 AGBL1 (0.4, 0.0076, P = 1.2e-05, N = 7824) (0.84, -0.1, P = 0.12, N = 859)
rs7162266(T)/15:94673885 intergenic (0.6, 0.0072, P = 3.9e-05, N = 7824) (0.69, -0.0069, P = 0.89, N = 859)
rs11638366(T)/15:98810226* CTD-2544M6.1 (0.43, -0.0076, P = 1.6e-05, N = 7824) (0.4, 0.00042, P = 0.99, N = 859)
rs869289(T)/16:12385806* SNX29 (0.38, -0.0077, P = 1.5e-05, N = 7824) (0.27, -0.041, P = 0.45, N = 859)
rs74016008(C)/16:27150916 EEF1A1P38 (0.11, 0.25, P = 2.1e-06, N = 1957) (0.14, 0.027, P = 0.69, N = 859)
rs893175(A)/16:49303818 intergenic (0.59, -0.0086, P = 1.5e-06, N = 7824) (0.33, -0.099, P = 0.05, N = 859)
rs11075967(T)/16:73154049 intergenic (0.67, -0.0087, P = 8.7e-07, N = 7824) (0.3, -0.061, P = 0.22, N = 859)
rs17144033(G)/16:7590752* RBFOX1 (0.089, -0.27, P = 2.7e-06, N = 1957) (0.18, -0.08, P = 0.22, N = 859)
rs1080941(A)/16:77890685 VAT1L (0.63, 0.0078, P = 1.1e-05, N = 7824) (0.41, -0.0023, P = 0.96, N = 859)
rs17750740(T)/16:80651109* CDYL2 (0.83, 0.01, P = 2.2e-05, N = 7824) (0.96, -0.029, P = 0.81, N = 859)
rs7208186(T)/17:10680890* CTC-297N7.5 (0.86, 0.014, P = 6.3e-08, N = 7824) (0.57, 0.038, P = 0.44, N = 859)
rs8077659(A)/17:13042271 intergenic (0.36, 0.0073, P = 3.7e-05, N = 7824) (0.19, 0.035, P = 0.59, N = 859)
rs8080958(A)/17:27508704 MYO18A (0.55, -0.0073, P = 2.7e-05, N = 7824) (0.83, 0.096, P = 0.13, N = 859)
rs1984518(T)/17:41521666 MIR2117 (0.58, -0.0074, P = 2.9e-05, N = 7824) (0.55, 0.023, P = 0.64, N = 859)
rs7209219(A)/17:66300683 ARSG (0.87, -0.013, P = 4.2e-05, N = 7824) (0.88, -0.038, P = 0.61, N = 859)
rs1859930(T)/17:70334561 RP11-1124B17.1 (0.59, 0.0077, P = 1.2e-05, N = 7824) (0.57, -0.077, P = 0.11, N = 859)
rs12955313(T)/18:11952865* intergenic (0.069, -0.29, P = 8.3e-06, N = 1957) (0.061, 0.038, P = 0.71, N = 859)
rs55928301(A)/18:25277047 intergenic (0.055, 0.35, P = 2.1e-06, N = 1957) (0.19, 0.068, P = 0.26, N = 859)
rs2612561(T)/18:42982959* SLC14A2 (0.45, 0.0074, P = 2.7e-05, N = 7824) (0.48, -0.03, P = 0.54, N = 859)
rs34467380(T)/18:6472786 intergenic (0.2, -0.19, P = 4.2e-06, N = 1957) (0.26, 0.13, P = 0.017, N = 859)
rs7241461(T)/18:74778515* MBP (0.47, 0.0074, P = 2.1e-05, N = 7824) (0.42, 0.036, P = 0.48, N = 859)
rs12984032(T)/19:19809147 CTC-412M14.6 (0.76, 0.011, P = 2.5e-05, N = 7824) (0.73, -0.064, P = 0.23, N = 859)
rs4801654(A)/19:56483863 NLRP8 (0.086, 0.014, P = 2.6e-05, N = 7824) (0.18, -0.0035, P = 0.95, N = 859)
rs56375520(T)/19:58434877 ZNF418 (0.24, 0.19, P = 8.6e-06, N = 1957) (0.25, 0.14, P = 0.0081, N = 859)
rs10404819(A)/19:9227673* OR7G1 (0.17, -0.011, P = 1.9e-05, N = 7824) (0.61, 0.036, P = 0.48, N = 859)
rs10183099(A)/2:152245087 intergenic (0.64, -0.0084, P = 2.4e-06, N = 7824) (0.9, 0.0098, P = 0.9, N = 859)
rs2290368(T)/2:152266473 RIF1 (0.57, -0.0075, P = 2.2e-05, N = 7824) (0.62, -0.046, P = 0.36, N = 859)
rs1564080(A)/2:157529960 intergenic (0.32, 0.0079, P = 7.5e-06, N = 7824) (0.45, 0.059, P = 0.23, N = 859)
rs1615586(T)/2:161743385* intergenic (0.77, -0.02, P = 4.2e-06, N = 7824) (0.8, 0.048, P = 0.42, N = 859)
rs11684292(T)/2:172117094 intergenic (0.052, -0.02, P = 1e-05, N = 7824) (0.037, 0.19, P = 0.12, N = 859)
rs17476649(A)/2:17262830* intergenic (0.35, 0.0073, P = 3.5e-05, N = 7824) (0.079, -0.028, P = 0.76, N = 859)
rs1486239(A)/2:180631925 ZNF385B (0.41, -0.0075, P = 2.1e-05, N = 7824) (0.6, -0.043, P = 0.37, N = 859)
rs1534208(C)/2:185009665 intergenic (0.55, -0.16, P = 6.1e-06, N = 1957) (0.15, -0.04, P = 0.55, N = 859)
rs7573642(T)/2:213010332 ERBB4 (0.98, -0.048, P = 4.9e-05, N = 7824) (0.75, -0.0041, P = 0.94, N = 859)
rs7592552(C)/2:214563795 SPAG16 (0.4, 0.16, P = 4.8e-06, N = 1957) (0.6, -0.044, P = 0.38, N = 859)
rs142363454(TCA)/2:215286688* VWC2L (0.12, 0.23, P = 5.2e-06, N = 1957) (0.41, -0.018, P = 0.71, N = 859)
rs7601275(A)/2:239060766 KLHL30 (0.35, 0.15, P = 9e-06, N = 1957) (0.68, 0.01, P = 0.84, N = 859)
rs7560860(A)/2:42497679 EML4 (0.43, 0.0079, P = 6.4e-06, N = 7824) (0.13, -0.04, P = 0.59, N = 859)
rs4564826(A)/2:43058278* AC098824.6 (0.23, -0.19, P = 9.4e-06, N = 1957) (0.22, 0.08, P = 0.17, N = 859)
rs55684321(A)/2:4978939 intergenic (0.38, -0.15, P = 1e-06, N = 1957) (0.17, -0.16, P = 0.015, N = 859)
rs13388859(T)/2:81051251 AC084193.1 (0.011, 0.082, P = 1.3e-05, N = 7824) (0.066, 0.13, P = 0.18, N = 859)
rs408961(C)/20:15045215* MACROD2 (0.64, -0.0073, P = 3.1e-05, N = 7824) (0.29, -0.067, P = 0.21, N = 859)
rs6085052(T)/20:5239399 intergenic (0.98, -0.026, P = 3.3e-05, N = 7824) (0.96, -0.11, P = 0.38, N = 859)
rs6085132(T)/20:5344064 intergenic (0.97, -0.027, P = 4e-06, N = 7824) (0.77, -0.014, P = 0.8, N = 859)
rs6011169(C)/20:62456818 ZBTB46 (0.13, -0.011, P = 2.7e-05, N = 7824) (0.29, -0.048, P = 0.36, N = 859)
rs1009576(T)/21:16542572 intergenic (0.14, -0.28, P = 1.9e-06, N = 1957) (0.75, 0.13, P = 0.016, N = 859)
rs2823289(T)/21:16841195* intergenic (0.58, -0.0073, P = 4.4e-05, N = 7824) (0.49, 0.047, P = 0.33, N = 859)
rs17693038(T)/21:18820372 C21orf37 (0.06, 0.032, P = 1.3e-05, N = 7824) (0.01, 0.12, P = 0.61, N = 859)
rs228029(A)/21:44068362 AP001626.2 (0.38, 0.0072, P = 4.9e-05, N = 7824) (0.24, -0.053, P = 0.34, N = 859)
rs17742907(A)/22:18890615 DGCR6 (0.076, 0.017, P = 9.6e-06, N = 7824) (0.036, 0.098, P = 0.45, N = 859)
rs5747934(T)/22:18915282 PRODH (0.047, 0.071, P = 2e-44, N = 7824) (0.2, -0.025, P = 0.68, N = 859)
rs35059460(C)/22:18964791 DGCR5 (0.66, 0.21, P = 6.4e-09, N = 1957) (0.5, 0.081, P = 0.08, N = 859)
rs2518802(A)/22:18975345* DGCR5 (0.9, -0.053, P = 4.2e-59, N = 7824) (0.86, 0.096, P = 0.18, N = 859)
rs4819778(T)/22:19134083 DGCR14 (0.33, -0.0097, P = 5.5e-08, N = 7824) (0.65, 0.087, P = 0.088, N = 859)
rs9827536(T)/3:191846778 intergenic (0.63, 0.0075, P = 1.9e-05, N = 7824) (0.28, -0.031, P = 0.56, N = 859)
rs1394836(T)/3:192454733* FGF12 (0.6, 0.0083, P = 2.2e-06, N = 7824) (0.84, -0.031, P = 0.64, N = 859)
rs11129161(T)/3:24738868 AC133680.1 (0.59, 0.0078, P = 1.4e-05, N = 7824) (0.73, -0.065, P = 0.23, N = 859)
rs11716669(T)/3:60801815 FHIT (0.4, 0.18, P = 7.8e-06, N = 1957) (0.24, -0.039, P = 0.48, N = 859)
rs6798346(A)/3:73078044* PPP4R2 (0.63, -0.017, P = 8.8e-06, N = 7824) (0.54, 0.0018, P = 0.97, N = 859)
rs6769362(C)/3:99296437* intergenic (0.64, -0.0079, P = 7.8e-06, N = 7824) (0.18, -0.093, P = 0.14, N = 859)
rs10494317(T)/4:130094338* RP11-378N18.1 (0.69, -0.0075, P = 2.5e-05, N = 7824) (0.71, -0.032, P = 0.55, N = 859)
rs17314804(T)/4:140946828* MAML3 (0.35, -0.0074, P = 2.9e-05, N = 7824) (0.082, 0.052, P = 0.54, N = 859)
rs4580644(T)/4:15785201 CD38 (0.49, 0.016, P = 8.2e-06, N = 7824) (0.66, -0.12, P = 0.023, N = 859)
rs2286460(A)/4:15964040* FGFBP2 (0.54, -0.0075, P = 2e-05, N = 7824) (0.43, 0.012, P = 0.8, N = 859)
rs732224(T)/4:162783324 FSTL5 (0.51, 0.0072, P = 3.8e-05, N = 7824) (0.53, 0.042, P = 0.39, N = 859)
rs12503744(A)/4:172203928* intergenic (0.02, -0.055, P = 1.6e-05, N = 7824) (0.32, -0.014, P = 0.78, N = 859)
rs6853509(T)/4:188999227 intergenic (0.44, -0.0076, P = 2.2e-05, N = 7824) (0.82, 0.044, P = 0.48, N = 859)
rs10517422(T)/4:37405256* KIAA1239 (0.2, 0.21, P = 4.8e-06, N = 1957) (0.02, 0.16, P = 0.35, N = 859)
rs4860172(C)/4:60389483* intergenic (0.37, 0.0077, P = 1.5e-05, N = 7824) (0.065, -0.026, P = 0.79, N = 859)
rs6446553(T)/4:6942857 TBC1D14 (0.59, -0.0077, P = 1.8e-05, N = 7824) (0.41, -0.027, P = 0.58, N = 859)
rs10007509(A)/4:71171720 intergenic (0.07, -0.31, P = 1e-05, N = 1957) (0.14, 0.056, P = 0.42, N = 859)
rs10155062(A)/4:7133905* intergenic (0.33, 0.0073, P = 4.3e-05, N = 7824) (0.59, 0.08, P = 0.1, N = 859)
rs1363786(T)/5:102225196 PAM (0.07, 0.016, P = 1.1e-05, N = 7824) (0.24, -0.0028, P = 0.96, N = 859)
rs10073414(C)/5:108436526 FER (0.89, 0.025, P = 3.8e-05, N = 7824) (0.87, -0.013, P = 0.85, N = 859)
rs7702811(G)/5:125923056 ALDH7A1 (0.55, 0.15, P = 2.7e-07, N = 1957) (0.92, 0.0087, P = 0.92, N = 859)
rs4868254(T)/5:172732331 intergenic (0.43, -0.0076, P = 2.7e-05, N = 7824) (0.54, 0.013, P = 0.78, N = 859)
rs147198383(G)/5:17395773 intergenic (0.037, 0.4, P = 9.7e-07, N = 1957) (0.011, 0.26, P = 0.27, N = 859)
rs2935623(A)/5:2767556 intergenic (0.62, -0.0079, P = 8.7e-06, N = 7824) (0.58, -0.043, P = 0.37, N = 859)
rs10512634(A)/5:35987551 UGT3A1 (0.14, 0.012, P = 8.6e-06, N = 7824) (0.023, -0.11, P = 0.49, N = 859)
rs10941406(A)/5:38756294* CTD-2127H9.1 (0.34, 0.0074, P = 3.3e-05, N = 7824) (0.41, -0.081, P = 0.097, N = 859)
rs31242(T)/5:53368869* ARL15 (0.86, 0.011, P = 2.2e-05, N = 7824) (0.92, -0.082, P = 0.35, N = 859)
rs4395600(A)/5:53989831 intergenic (0.083, -0.014, P = 3.7e-05, N = 7824) (0.15, -0.041, P = 0.53, N = 859)
rs16900163(A)/5:71915010 CTC-347C20.2 (0.81, -0.018, P = 4.9e-05, N = 7824) (0.74, -0.077, P = 0.17, N = 859)
rs1650723(T)/5:79922030 DHFR (0.17, 0.011, P = 3e-05, N = 7824) (0.065, 0.086, P = 0.38, N = 859)
rs11963846(A)/6:112489446 LAMA4 (0.45, 0.008, P = 8.6e-06, N = 7824) (0.8, -0.0083, P = 0.89, N = 859)
rs9385646(T)/6:133725127 EYA4 (0.84, -0.23, P = 5.1e-06, N = 1957) (0.42, -0.022, P = 0.66, N = 859)
rs175866(T)/6:151225521* MTHFD1L (0.58, -0.0086, P = 1.1e-06, N = 7824) (0.87, 0.13, P = 0.068, N = 859)
rs4869824(C)/6:154758528* CNKSR3 (0.52, 0.0074, P = 1.8e-05, N = 7824) (0.39, -0.05, P = 0.29, N = 859)
rs7755193(A)/6:158644859* intergenic (0.15, -0.011, P = 2.9e-05, N = 7824) (0.37, -0.026, P = 0.61, N = 859)
rs9396897(A)/6:18668391 intergenic (0.63, 0.0072, P = 3.6e-05, N = 7824) (0.69, -0.015, P = 0.78, N = 859)
rs2185865(A)/6:18828241 intergenic (0.92, 0.018, P = 1.7e-07, N = 7824) (0.85, -0.056, P = 0.4, N = 859)
rs612262(T)/6:35891608* SRPK1 (0.36, -0.0073, P = 3.3e-05, N = 7824) (0.73, -0.0042, P = 0.94, N = 859)
rs12202955(A)/6:53299090 intergenic (0.51, -0.0074, P = 2.5e-05, N = 7824) (0.37, -0.1, P = 0.039, N = 859)
rs2145543(C)/6:66874550 intergenic (0.096, 0.36, P = 3.7e-06, N = 1957) (0.16, 0.014, P = 0.83, N = 859)
rs9360494(T)/6:72485205* intergenic (0.6, -0.0083, P = 2.7e-06, N = 7824) (0.83, -0.0092, P = 0.88, N = 859)
rs60933810(C)/7:120981502 WNT16 (0.1, 0.23, P = 8.3e-06, N = 1957) (0.034, 0.13, P = 0.32, N = 859)
rs10954090(T)/7:125529994 intergenic (0.15, 0.013, P = 4e-07, N = 7824) (0.16, 0.0062, P = 0.92, N = 859)
rs17167391(C)/7:133704633 EXOC4 (0.2, 0.17, P = 3.2e-06, N = 1957) (0.039, -0.075, P = 0.54, N = 859)
rs12540186(T)/7:141728622 MGAM (0.19, -0.011, P = 2.4e-05, N = 7824) (0.18, -0.057, P = 0.38, N = 859)
rs12333473(A)/7:144729497* intergenic (0.66, 0.0072, P = 4.6e-05, N = 7824) (0.7, -0.039, P = 0.45, N = 859)
rs4726811(C)/7:146540777* CNTNAP2 (0.22, 0.19, P = 2.9e-06, N = 1957) (0.16, -0.0031, P = 0.96, N = 859)
rs4509197(A)/7:26594653* AC004947.2 (0.36, -0.0075, P = 2.1e-05, N = 7824) (0.27, -0.0094, P = 0.86, N = 859)
rs1524385(T)/7:54084188 intergenic (0.17, 0.021, P = 3.8e-05, N = 7824) (0.38, 0.097, P = 0.056, N = 859)
rs6465597(C)/7:97180908* intergenic (0.069, 0.2, P = 9.2e-07, N = 1957) (0.21, -0.042, P = 0.47, N = 859)
rs13258818(T)/8:121639595* SNTB1 (0.63, 0.0073, P = 3.5e-05, N = 7824) (0.13, -0.11, P = 0.14, N = 859)
rs7819776(A)/8:135465833* intergenic (0.42, -0.0073, P = 2.9e-05, N = 7824) (0.31, -0.014, P = 0.78, N = 859)
rs11784679(T)/8:22831150* RN7SL303P (0.78, -0.012, P = 3.6e-06, N = 7824) (0.95, 0.075, P = 0.49, N = 859)
rs13258708(C)/8:3938103 CSMD1 (0.1, -0.014, P = 3.1e-05, N = 7824) (0.023, 0.18, P = 0.27, N = 859)
rs2445717(T)/8:95245949 intergenic (0.64, -0.0075, P = 2.1e-05, N = 7824) (0.77, 0.02, P = 0.72, N = 859)
rs2680218(T)/9:109998648* intergenic (0.46, -0.0077, P = 1.1e-05, N = 7824) (0.29, -0.012, P = 0.82, N = 859)
rs4978836(A)/9:112338981* intergenic (0.39, 0.009, P = 6.8e-06, N = 7824) (0.31, 0.059, P = 0.25, N = 859)
rs13285974(A)/9:119579217 ASTN2 (0.42, 0.0076, P = 1.7e-05, N = 7824) (0.64, 0.12, P = 0.022, N = 859)
rs10121207(T)/9:119990164* ASTN2 (0.48, 0.0075, P = 3e-05, N = 7824) (0.56, 0.026, P = 0.59, N = 859)
rs6478330(T)/9:120619093 RP11-281A20.1 (0.9, 0.014, P = 3.4e-05, N = 7824) (0.95, 0.034, P = 0.76, N = 859)
rs1928871(C)/9:12350794* intergenic (0.4, 0.0083, P = 2.8e-06, N = 7824) (0.084, -0.12, P = 0.14, N = 859)
rs1929425(T)/9:12367988* intergenic (0.4, 0.0072, P = 3.9e-05, N = 7824) (0.71, -0.066, P = 0.21, N = 859)
rs7029664(T)/9:132048953* RP11-344B5.2 (0.51, 0.0077, P = 9.7e-06, N = 7824) (0.62, 0.034, P = 0.51, N = 859)
rs776783(A)/9:18653316* ADAMTSL1 (0.97, -0.049, P = 1.7e-05, N = 7824) (0.74, -0.061, P = 0.27, N = 859)
rs12550887(G)/9:32344871 intergenic (0.18, -0.14, P = 2.3e-06, N = 1957) (0.19, 0.013, P = 0.83, N = 859)
rs11143935(T)/9:76966194 intergenic (0.33, 0.18, P = 7e-06, N = 1957) (0.18, 0.014, P = 0.83, N = 859)
rs7858706(T)/9:77966690 intergenic (0.5, -0.0077, P = 9.7e-06, N = 7824) (0.14, 0.011, P = 0.87, N = 859)
Results from Univariable Mendelian Randomization of L-Proline & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 161 -0.01 (-0.096- 0.075) P=0.81 6.1 48 9.06 (0- 45.8) NA NA 0.0011 P=0.84
MR-Egger 161 -0.015 (-0.11- 0.082) P=0.76 6.1 48 9.06 (0- 45.8) 165 0.35 0.0011 P=0.84
Weighted median 161 0.051 (-0.087- 0.19) P=0.47 6.1 48 9.06 (0- 45.8) NA NA 0.0011 P=0.84
Results from Univariable MRPRESSO of L-Proline & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.04 -0.24 0.81
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Proline & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 97 -0.01 (-0.11- 0.093) P=0.85 7.5 36 16.2 (0- 93.7) NA NA 0.0077 P=0.35
MR-Egger 97 -0.04 (-0.16- 0.08) P=0.51 7.5 36 16.2 (0- 93.7) 121 0.04 0.0077 P=0.35
Weighted median 97 0.068 (-0.084- 0.22) P=0.38 7.5 36 16.2 (0- 93.7) NA NA 0.0077 P=0.35
Results from Univariable MRPRESSO of L-Proline & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.05 -0.19 0.85
beta.exposure Outlier-corrected NA NA NA NA

Pyruvic acid

Instruments Associations with Pyruvic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Pyruvic acid (Shin et al/Long et al) eGFR (CSSCD)
rs12124783(T)/1:176891453* ASTN1 (0.25, 0.018, P = 3.5e-05, N = 7824) (0.3, -0.022, P = 0.68, N = 859)
rs764151(A)/1:20746568* LINC01141 (0.083, 0.029, P = 3.7e-05, N = 7824) (0.17, -0.02, P = 0.76, N = 859)
rs4648464(A)/1:3171929 PRDM16 (0.55, -0.016, P = 9.4e-06, N = 7824) (0.13, -0.024, P = 0.74, N = 859)
rs7085088(A)/10:112799928 intergenic (0.2, -0.018, P = 2.7e-05, N = 7824) (0.29, 0.013, P = 0.8, N = 859)
rs1327690(A)/10:6763749 intergenic (0.095, -0.026, P = 2.8e-05, N = 7824) (0.016, -0.34, P = 0.064, N = 859)
rs2488068(T)/10:94506628* intergenic (0.33, 0.018, P = 3.7e-05, N = 7824) (0.38, -0.15, P = 0.0022, N = 859)
rs11216267(T)/11:116952392* SIK3 (0.64, 0.017, P = 1.6e-06, N = 7824) (0.15, -0.0017, P = 0.98, N = 859)
rs7941871(T)/11:13228006 intergenic (0.84, -0.024, P = 1.6e-06, N = 7824) (0.54, -0.042, P = 0.38, N = 859)
rs922762(A)/11:13228375* intergenic (0.34, 0.017, P = 4e-05, N = 7824) (0.34, -0.072, P = 0.16, N = 859)
rs1983255(T)/11:1836032* intergenic (0.4, -0.015, P = 2e-05, N = 7824) (0.6, -0.093, P = 0.056, N = 859)
rs10835174(T)/11:3853473* RHOG (0.65, -0.015, P = 2.1e-05, N = 7824) (0.77, 0.00046, P = 0.99, N = 859)
rs11038739(A)/11:46017895* PHF21A (0.79, -0.02, P = 3e-06, N = 7824) (0.9, 0.064, P = 0.44, N = 859)
rs505621(A)/11:83277927* DLG2 (0.63, -0.014, P = 4.3e-05, N = 7824) (0.87, -0.0015, P = 0.98, N = 859)
rs16946212(T)/12:116200202 RP11-110L15.1 (0.79, -0.018, P = 1.9e-05, N = 7824) (0.8, 0.016, P = 0.79, N = 859)
rs3925033(T)/12:18456713 PIK3C2G (0.46, -0.016, P = 2.6e-06, N = 7824) (0.58, 0.018, P = 0.73, N = 859)
rs10505896(T)/12:23770330* SOX5 (0.88, 0.025, P = 2.3e-05, N = 7824) (0.91, -0.002, P = 0.98, N = 859)
rs12368229(A)/12:40747462* LRRK2 (0.15, 0.02, P = 4.7e-05, N = 7824) (0.08, 0.068, P = 0.44, N = 859)
rs11063657(A)/12:5517590 RP11-1038A11.1 (0.92, -0.028, P = 4.7e-05, N = 7824) (0.98, -0.15, P = 0.35, N = 859)
rs1305261(A)/12:81141819* intergenic (0.98, 0.16, P = 5.9e-06, N = 7824) (0.82, -0.065, P = 0.29, N = 859)
rs9558110(A)/13:104217164* intergenic (0.73, -0.02, P = 4.2e-05, N = 7824) (0.96, -0.054, P = 0.65, N = 859)
rs924483(A)/13:27061003* intergenic (0.092, -0.029, P = 3.3e-06, N = 7824) (0.19, 0.053, P = 0.39, N = 859)
rs868116(T)/13:70512698* KLHL1 (0.37, -0.015, P = 1.4e-05, N = 7824) (0.51, -0.013, P = 0.78, N = 859)
rs912857(T)/14:33657980* NPAS3 (0.54, 0.014, P = 4.7e-05, N = 7824) (0.58, -0.055, P = 0.27, N = 859)
rs8009583(T)/14:84765763 intergenic (0.77, 0.018, P = 1.5e-05, N = 7824) (0.72, 0.044, P = 0.4, N = 859)
rs1437543(A)/15:61468467* RP11-39M21.1 (0.25, 0.018, P = 2.2e-05, N = 7824) (0.42, 0.035, P = 0.49, N = 859)
rs8028830(A)/15:77508046* PEAK1 (0.85, -0.021, P = 2.9e-05, N = 7824) (0.97, 0.1, P = 0.43, N = 859)
rs11259923(A)/15:84535704 ADAMTSL3 (0.81, 0.042, P = 3.9e-06, N = 7824) (0.72, 0.045, P = 0.4, N = 859)
rs2198307(T)/15:87237609* AGBL1 (0.47, -0.014, P = 4.7e-05, N = 7824) (0.87, -0.019, P = 0.79, N = 859)
rs7206138(T)/16:26504692 intergenic (0.64, -0.017, P = 4.5e-05, N = 7824) (0.77, -0.017, P = 0.76, N = 859)
rs2880608(A)/16:6028451* RP11-420N3.2 (0.5, 0.014, P = 4.3e-05, N = 7824) (0.77, -0.074, P = 0.21, N = 859)
rs6503455(T)/17:44140748* KANSL1 (0.4, -0.014, P = 4.4e-05, N = 7824) (0.25, -0.098, P = 0.074, N = 859)
rs4794245(T)/17:49461290* intergenic (0.26, -0.019, P = 1.1e-05, N = 7824) (0.38, -0.048, P = 0.34, N = 859)
rs4790946(T)/17:63366847* intergenic (0.23, 0.036, P = 3.6e-05, N = 7824) (0.16, 0.068, P = 0.3, N = 859)
rs334384(T)/18:7137068* SLC25A51P2 (0.79, -0.018, P = 3.7e-05, N = 7824) (0.85, 0.09, P = 0.18, N = 859)
rs2115100(C)/19:48522894* ELSPBP1 (0.5, 0.015, P = 3.9e-05, N = 7824) (0.69, -0.0079, P = 0.88, N = 859)
rs2445857(T)/19:58708507* ZNF274 (0.089, -0.028, P = 1.5e-05, N = 7824) (0.28, -0.042, P = 0.43, N = 859)
rs10500204(A)/19:7182963* INSR (0.72, 0.017, P = 4.7e-05, N = 7824) (0.8, -0.079, P = 0.18, N = 859)
rs6743415(A)/2:15826092* AC008271.1 (0.49, 0.015, P = 3.9e-05, N = 7824) (0.68, 0.091, P = 0.081, N = 859)
rs780094(T)/2:27741237* GCKR (0.39, 0.015, P = 1.6e-05, N = 7824) (0.17, -0.11, P = 0.083, N = 859)
rs6432031(A)/2:9831131 RP11-521D12.2 (0.11, 0.029, P = 2.9e-05, N = 7824) (0.19, -0.071, P = 0.25, N = 859)
rs6055991(A)/20:8655834* PLCB1 (0.81, -0.021, P = 3.3e-05, N = 7824) (0.94, 0.014, P = 0.9, N = 859)
rs4816172(T)/20:9742096* PAK7 (0.85, -0.026, P = 2.3e-05, N = 7824) (0.92, 0.025, P = 0.78, N = 859)
rs2833657(A)/21:33478113* LINC00159 (0.83, 0.024, P = 3e-06, N = 7824) (0.72, 0.0038, P = 0.94, N = 859)
rs2252264(A)/22:18640203 USP18 (0.94, 0.07, P = 4.4e-05, N = 7824) (0.76, 0.11, P = 0.056, N = 859)
rs7631540(T)/3:113830519* intergenic (0.48, -0.015, P = 2.5e-05, N = 7824) (0.16, -0.021, P = 0.74, N = 859)
rs1133034(T)/3:182640615* ATP11B (0.076, 0.032, P = 3.9e-06, N = 7824) (0.22, 0.069, P = 0.25, N = 859)
rs2880322(T)/4:108991375* LEF1 (0.088, -0.026, P = 3.6e-05, N = 7824) (0.35, 0.03, P = 0.55, N = 859)
rs11131981(T)/4:181186334* intergenic (0.38, -0.02, P = 3.4e-05, N = 7824) (0.2, -0.027, P = 0.65, N = 859)
rs12515830(T)/5:101178314* intergenic (0.87, 0.024, P = 5.8e-06, N = 7824) (0.98, -0.16, P = 0.33, N = 859)
rs6895278(T)/5:147122020* JAKMIP2 (0.34, 0.017, P = 4.1e-06, N = 7824) (0.21, 0.1, P = 0.083, N = 859)
rs2964063(T)/5:173859251* RP11-267A15.1 (0.99, -0.073, P = 2.2e-06, N = 7824) (0.93, 0.027, P = 0.77, N = 859)
rs2925703(A)/5:6286005* HMGB3P3 (0.81, -0.018, P = 3.6e-05, N = 7824) (0.66, 0.075, P = 0.14, N = 859)
rs7715701(C)/5:92717972 intergenic (0.013, -0.15, P = 1.3e-05, N = 7824) (0.48, 0.031, P = 0.53, N = 859)
rs13195863(A)/6:100393761* MCHR2 (0.2, 0.022, P = 4.1e-07, N = 7824) (0.36, 0.05, P = 0.33, N = 859)
rs11753541(A)/6:154126010 intergenic (0.82, 0.039, P = 2.8e-05, N = 7824) (0.97, -0.029, P = 0.83, N = 859)
rs9505008(T)/6:7033860* intergenic (0.59, 0.014, P = 4.2e-05, N = 7824) (0.25, 0.074, P = 0.18, N = 859)
rs1316976(A)/6:73572196* KCNQ5 (0.49, 0.015, P = 3e-05, N = 7824) (0.67, -0.02, P = 0.69, N = 859)
rs2207444(A)/6:99513061 intergenic (0.7, 0.018, P = 2.4e-05, N = 7824) (0.6, 0.032, P = 0.52, N = 859)
rs848853(A)/7:108993043 intergenic (0.07, -0.03, P = 4.8e-05, N = 7824) (0.34, 0.026, P = 0.62, N = 859)
rs6979475(A)/7:24917974 OSBPL3 (0.25, 0.017, P = 4.7e-05, N = 7824) (0.21, -0.06, P = 0.31, N = 859)
rs10237319(T)/7:4073601* SDK1 (0.15, 0.023, P = 9.8e-06, N = 7824) (0.51, -0.094, P = 0.05, N = 859)
rs13247447(A)/7:5698964 RNF216 (0.44, 0.015, P = 2.3e-05, N = 7824) (0.16, 0.015, P = 0.82, N = 859)
rs7813799(C)/8:135396144* intergenic (0.43, -0.015, P = 2.5e-05, N = 7824) (0.38, -0.047, P = 0.34, N = 859)
rs2748410(A)/8:142503676* MROH5 (0.68, -0.032, P = 3.2e-05, N = 7824) (0.62, 0.094, P = 0.062, N = 859)
rs937970(T)/8:22770139 PEBP4 (0.47, 0.017, P = 3.7e-05, N = 7824) (0.6, -0.011, P = 0.82, N = 859)
rs2350463(A)/8:39640851 ADAM2 (0.82, -0.041, P = 2.9e-05, N = 7824) (0.96, -0.33, P = 0.012, N = 859)
rs13283334(A)/9:117531782* intergenic (0.3, -0.018, P = 2.7e-05, N = 7824) (0.088, 0.062, P = 0.45, N = 859)
rs1948080(T)/9:11852043* intergenic (0.62, -0.015, P = 3.3e-05, N = 7824) (0.87, -0.088, P = 0.21, N = 859)
rs2809428(A)/9:129001029* intergenic (0.67, -0.018, P = 1.5e-05, N = 7824) (0.89, -0.037, P = 0.63, N = 859)
rs9406589(T)/9:16222313 C9orf92 (0.88, -0.024, P = 2.6e-05, N = 7824) (0.75, 0.091, P = 0.1, N = 859)
Results from Univariable Mendelian Randomization of Pyruvic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 70 -0.12 (-0.55- 0.3) P=0.56 1.3 1.2 5.87 (0- 64) NA NA 0.0024 P=0.83
MR-Egger 70 -0.17 (-0.77- 0.43) P=0.58 1.3 1.2 5.87 (0- 64) 83 0.11 0.0024 P=0.83
Weighted median 70 -0.3 (-0.87- 0.27) P=0.31 1.3 1.2 5.87 (0- 64) NA NA 0.0024 P=0.83
Results from Univariable MRPRESSO of Pyruvic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.12 0.22 -0.58 0.56
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Pyruvic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 21 0.095 (-0.48- 0.67) P=0.75 1.7 0.47 12.7 (0- 78.5) NA NA 0.0054 P=0.79
MR-Egger 21 0.015 (-0.82- 0.85) P=0.97 1.7 0.47 12.7 (0- 78.5) 23 0.24 0.0054 P=0.79
Weighted median 21 -0.03 (-0.73- 0.67) P=0.93 1.7 0.47 12.7 (0- 78.5) NA NA 0.0054 P=0.79
Results from Univariable MRPRESSO of Pyruvic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.09 0.29 0.32 0.75
beta.exposure Outlier-corrected NA NA NA NA

Quinolinic acid

Instruments Associations with Quinolinic acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Quinolinic acid (Shin et al/Long et al) eGFR (CSSCD)
rs76358452(G)/1:11052159 CFL1P6 (0.027, 0.6, P = 1.1e-06, N = 1925) (0.46, -0.017, P = 0.73, N = 859)
rs557549(C)/10:115138169* intergenic (0.99, 0.21, P = 1.7e-06, N = 1925) (0.64, -0.062, P = 0.23, N = 859)
rs16921251(T)/10:21201598 NEBL (0.012, -0.78, P = 1.8e-07, N = 1925) (0.1, -0.15, P = 0.063, N = 859)
rs35350651(AC)/12:111907431* ATXN2 (0.5, -0.11, P = 2.6e-06, N = 1925) (0.93, 0.026, P = 0.77, N = 859)
rs76795319(C)/12:24821381* intergenic (0.022, -0.62, P = 4e-06, N = 1925) (0.07, 0.12, P = 0.2, N = 859)
rs373374952(CGT)/12:76934267 OSBPL8 (0.023, -0.57, P = 4.9e-06, N = 1925) (0.46, 0.077, P = 0.11, N = 859)
rs12100998(A)/14:74050925 intergenic (0.018, -0.45, P = 7.3e-06, N = 1925) (0.36, 0.058, P = 0.23, N = 859)
rs576870357(CA)/16:9032196 USP7 (0.032, 0.37, P = 3e-06, N = 1925) (0.13, 0.039, P = 0.58, N = 859)
rs62123404(A)/19:23738581 ZNF675 (0.099, -0.31, P = 5.2e-07, N = 1925) (0.013, 0.34, P = 0.11, N = 859)
rs113615666(CT)/2:29375775* CLIP4 (0.34, 0.19, P = 4.2e-06, N = 1925) (0.2, 0.0023, P = 0.97, N = 859)
rs55849091(G)/2:60600972 AC007381.2 (0.14, 0.3, P = 9.7e-08, N = 1925) (0.16, 0.13, P = 0.053, N = 859)
rs13039318(C)/20:3737232 C20orf27 (0.26, -0.22, P = 7.8e-06, N = 1925) (0.49, 0.067, P = 0.15, N = 859)
rs137076(C)/22:42976456 POLDIP3 (0.11, -0.2, P = 8e-06, N = 1925) (0.31, 0.075, P = 0.16, N = 859)
rs5852001(CT)/3:115957699 LSAMP (0.44, -0.1, P = 3.6e-07, N = 1925) (0.49, -0.016, P = 0.74, N = 859)
rs78044678(G)/3:166732391 intergenic (0.023, -0.46, P = 5.2e-06, N = 1925) (0.042, 0.067, P = 0.58, N = 859)
rs6444180(C)/3:186607448* intergenic (0.96, 0.27, P = 6.6e-06, N = 1925) (0.94, -0.19, P = 0.05, N = 859)
rs529207629(AT)/3:189833176 LEPREL1 (0.098, -0.23, P = 5e-06, N = 1925) (0.11, -0.071, P = 0.35, N = 859)
rs140021783(T)/4:158544831 intergenic (0.032, 0.33, P = 7.3e-06, N = 1925) (0.011, -0.45, P = 0.053, N = 859)
rs143827831(G)/4:69556127 intergenic (0.17, -0.22, P = 3.7e-06, N = 1925) (0.04, 0.085, P = 0.49, N = 859)
rs2306447(G)/4:9499419 UNC93B7 (0.88, 0.25, P = 5e-06, N = 1925) (0.57, -0.0013, P = 0.98, N = 859)
rs35391681(C)/5:117845902 CTD-2281M20.1 (0.091, -0.28, P = 4.7e-06, N = 1925) (0.089, -0.082, P = 0.34, N = 859)
rs60689100(T)/5:159718987 CCNJL (0.097, -0.27, P = 2.5e-06, N = 1925) (0.21, 0.12, P = 0.05, N = 859)
rs10940993(G)/5:32020001* PDZD2 (0.63, 0.17, P = 8.2e-06, N = 1925) (0.2, 0.012, P = 0.85, N = 859)
rs34922076(C)/5:40897141 intergenic (0.24, -0.2, P = 2.5e-06, N = 1925) (0.037, 0.17, P = 0.18, N = 859)
rs62427973(A)/6:121904036 RNU2-8P (0.2, -0.17, P = 1.1e-06, N = 1925) (0.03, -0.047, P = 0.74, N = 859)
rs662138(G)/6:160564476* SLC22A1 (0.17, -0.29, P = 5.9e-08, N = 1925) (0.054, -0.099, P = 0.35, N = 859)
rs7761574(C)/6:33843039* LINC01016 (0.26, 0.19, P = 7.5e-06, N = 1925) (0.45, 0.0096, P = 0.84, N = 859)
rs35559950(G)/7:148162915 intergenic (0.24, 0.17, P = 9.7e-06, N = 1925) (0.095, 0.04, P = 0.63, N = 859)
rs35716920(A)/7:89574638 STEAP2-AS1 (0.07, 0.29, P = 5.6e-06, N = 1925) (0.15, -0.11, P = 0.11, N = 859)
rs4472563(C)/8:1893021 ARHGEF10 (0.034, -0.4, P = 9.1e-06, N = 1925) (0.17, -0.015, P = 0.82, N = 859)
rs149173925(G)/8:55718870 RP11-56A10.1 (0.011, -0.69, P = 8.5e-06, N = 1925) (0.07, 0.17, P = 0.076, N = 859)
rs1121220(G)/8:96592156* KB-1047C11.2 (0.41, -0.19, P = 7.3e-08, N = 1925) (0.28, 0.027, P = 0.61, N = 859)
rs2197049(T)/9:10143304 PTPRD (0.14, -0.21, P = 7.6e-06, N = 1925) (0.11, 0.058, P = 0.45, N = 859)
Results from Univariable Mendelian Randomization of Quinolinic acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 33 -0.074 (-0.15- -4.6e-05) P=0.05 24 40 19.9 (0- 67.1) NA NA -0.017 P=0.54
MR-Egger 33 -0.03 (-0.19- 0.13) P=0.71 24 40 19.9 (0- 67.1) 40 0.13 -0.017 P=0.54
Weighted median 33 -0.094 (-0.2- 0.0089) P=0.073 24 40 19.9 (0- 67.1) NA NA -0.017 P=0.54
Results from Univariable MRPRESSO of Quinolinic acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.07 0.04 -1.96 0.06
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Quinolinic acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 24 -0.063 (-0.15- 0.022) P=0.15 23 29 28.9 (0- 80.5) NA NA -0.026 P=0.49
MR-Egger 24 -0.002 (-0.19- 0.19) P=0.98 23 29 28.9 (0- 80.5) 33 0.06 -0.026 P=0.49
Weighted median 24 -0.082 (-0.19- 0.027) P=0.14 23 29 28.9 (0- 80.5) NA NA -0.026 P=0.49
Results from Univariable MRPRESSO of Quinolinic acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.06 0.04 -1.45 0.16
beta.exposure Outlier-corrected NA NA NA NA

Salicyluric acid

Instruments Associations with Salicyluric acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Salicyluric acid (Shin et al/Long et al) eGFR (CSSCD)
rs2138800(A)/1:102981095* intergenic (0.98, -0.94, P = 1.5e-05, N = 7824) (0.8, 0.03, P = 0.63, N = 859)
rs10886877(T)/10:85425691 intergenic (0.91, -0.17, P = 1.7e-06, N = 7824) (0.97, -0.32, P = 0.034, N = 859)
rs11824477(T)/11:111103318 intergenic (0.58, 0.095, P = 9.6e-06, N = 7824) (0.65, 0.002, P = 0.97, N = 859)
rs2283208(A)/11:2743859* KCNQ1 (0.49, -0.081, P = 4.2e-05, N = 7824) (0.24, 0.034, P = 0.53, N = 859)
rs2126432(A)/11:38205040* intergenic (0.99, -0.46, P = 3.6e-05, N = 7824) (0.77, -0.05, P = 0.38, N = 859)
rs11105725(T)/12:91045724 intergenic (0.3, -0.11, P = 1.7e-05, N = 7824) (0.041, -0.094, P = 0.44, N = 859)
rs9599763(A)/13:35440514 intergenic (0.036, 0.24, P = 1.7e-05, N = 7824) (0.3, -0.047, P = 0.38, N = 859)
rs9534848(T)/13:48431473 intergenic (0.51, -0.23, P = 1.7e-05, N = 7824) (0.15, 0.039, P = 0.56, N = 859)
rs9599057(A)/13:66611146* intergenic (0.91, -0.14, P = 3.8e-05, N = 7824) (0.99, -0.23, P = 0.33, N = 859)
rs1713440(A)/14:20875269* TEP1 (0.34, -0.089, P = 4e-05, N = 7824) (0.76, 0.077, P = 0.15, N = 859)
rs1951656(T)/14:54530629* intergenic (0.99, -0.42, P = 2.2e-06, N = 7824) (0.68, 0.1, P = 0.052, N = 859)
rs6574873(C)/14:86611700 intergenic (0.02, 1.1, P = 1.1e-05, N = 7824) (0.11, 0.016, P = 0.84, N = 859)
rs17114742(C)/15:25058590* intergenic (0.13, 0.12, P = 3.6e-05, N = 7824) (0.26, 0.024, P = 0.66, N = 859)
rs1484976(T)/15:25839363* intergenic (0.98, -0.34, P = 9.5e-06, N = 7824) (0.98, -0.14, P = 0.39, N = 859)
rs7178993(A)/15:25844529* intergenic (0.98, -0.32, P = 1.2e-05, N = 7824) (0.92, 0.011, P = 0.9, N = 859)
rs3093322(C)/16:27445360 IL21R (0.18, -0.14, P = 2e-05, N = 7824) (0.045, -0.1, P = 0.38, N = 859)
rs37058(A)/16:58563199* CNOT1 (0.069, 0.19, P = 5.3e-06, N = 7824) (0.023, 0.011, P = 0.94, N = 859)
rs10420258(T)/19:33602757 GPATCH1 (0.14, 0.11, P = 4.3e-05, N = 7824) (0.1, 0.019, P = 0.81, N = 859)
rs735507(A)/19:58720360* ZNF274 (0.81, -0.11, P = 4.6e-06, N = 7824) (0.82, -0.054, P = 0.39, N = 859)
rs12461352(A)/19:58869180 ZNF497 (0.47, 0.087, P = 2.6e-05, N = 7824) (0.19, -0.018, P = 0.77, N = 859)
rs12982977(A)/19:9043021* MUC16 (0.95, -0.38, P = 1.5e-05, N = 7824) (0.84, -0.027, P = 0.68, N = 859)
rs2293220(T)/2:152728509* CACNB4 (0.014, 0.41, P = 1.5e-05, N = 7824) (0.17, -0.13, P = 0.04, N = 859)
rs219633(A)/21:27868059 CYYR1 (0.12, 0.15, P = 6e-07, N = 7824) (0.47, -0.033, P = 0.5, N = 859)
rs9977045(T)/21:43363686* C2CD2 (0.6, 0.086, P = 3.4e-05, N = 7824) (0.51, 0.037, P = 0.45, N = 859)
rs4858919(T)/3:162362878 intergenic (0.89, -0.13, P = 2.1e-05, N = 7824) (0.97, -0.099, P = 0.5, N = 859)
rs9848396(A)/3:164977695* RP11-85M11.2 (0.23, 0.095, P = 2.8e-05, N = 7824) (0.13, -0.061, P = 0.39, N = 859)
rs3964616(A)/3:181691234 RP11-416O18.1 (0.7, -0.25, P = 3.6e-05, N = 7824) (0.75, -0.012, P = 0.83, N = 859)
rs7663798(A)/4:141715430* intergenic (0.049, 0.2, P = 7.2e-06, N = 7824) (0.068, 0.057, P = 0.55, N = 859)
rs530424(T)/4:176124914* intergenic (0.97, -0.8, P = 2.6e-05, N = 7824) (0.85, -0.13, P = 0.042, N = 859)
rs919028(A)/4:99208331 RAP1GDS1 (0.95, -0.55, P = 8.7e-06, N = 7824) (0.93, -0.052, P = 0.59, N = 859)
rs6895553(T)/5:114821667 CTB-161J7.1 (0.95, -0.2, P = 1.3e-05, N = 7824) (0.62, -0.021, P = 0.67, N = 859)
rs2961632(A)/5:136640875 SPOCK1 (0.39, -0.081, P = 4.3e-05, N = 7824) (0.43, -0.033, P = 0.5, N = 859)
rs17317833(A)/5:67533624* PIK3R1 (0.14, -0.12, P = 1.4e-05, N = 7824) (0.046, -0.048, P = 0.68, N = 859)
rs3800052(T)/6:1773297* GMDS (0.085, 0.17, P = 5.5e-06, N = 7824) (0.019, -0.096, P = 0.59, N = 859)
rs17537088(T)/7:128027749 IMPDH1 (0.85, -0.12, P = 2.2e-05, N = 7824) (0.96, -0.17, P = 0.18, N = 859)
rs10258070(T)/7:15318473* AGMO (0.72, -0.09, P = 1.7e-05, N = 7824) (0.18, -0.072, P = 0.25, N = 859)
rs2470997(A)/7:47432942 TNS3 (0.72, -0.09, P = 1.8e-05, N = 7824) (0.96, 0.06, P = 0.62, N = 859)
rs6944358(T)/7:5814178* RNF216 (0.47, -0.084, P = 1.1e-05, N = 7824) (0.3, 0.023, P = 0.66, N = 859)
rs1179620(T)/7:75252714* HIP1 (0.55, 0.083, P = 1.2e-05, N = 7824) (0.47, 0.045, P = 0.37, N = 859)
rs17682068(A)/8:119398255* SAMD12 (0.92, -0.18, P = 1.5e-07, N = 7824) (0.99, -0.12, P = 0.56, N = 859)
rs7839700(A)/8:127096690 intergenic (0.96, -0.21, P = 2e-05, N = 7824) (0.93, 0.048, P = 0.62, N = 859)
rs2244320(A)/8:18670908 PSD3 (0.95, -0.22, P = 4.6e-05, N = 7824) (0.95, -0.24, P = 0.026, N = 859)
rs7003385(T)/8:41586750 ANK1 (0.66, -0.086, P = 1.5e-05, N = 7824) (0.89, -0.026, P = 0.74, N = 859)
rs7016707(T)/8:41586822 ANK1 (0.099, 0.14, P = 5.8e-06, N = 7824) (0.36, -0.052, P = 0.3, N = 859)
rs7049159(T)/9:91266181 RP13-60M5.2 (0.17, 0.3, P = 4.3e-05, N = 7824) (0.49, 0.016, P = 0.74, N = 859)
rs10993714(A)/9:93613106* SYK (0.98, -0.29, P = 4.3e-05, N = 7824) (0.88, 0.0054, P = 0.94, N = 859)
Results from Univariable Mendelian Randomization of Salicyluric acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 46 0.013 (-0.044- 0.071) P=0.65 66 38 7.84 (0- 40.6) NA NA 0.0037 P=0.8
MR-Egger 46 0.005 (-0.084- 0.094) P=0.91 66 38 7.84 (0- 40.6) 41 0.62 0.0037 P=0.8
Weighted median 46 0.0079 (-0.084- 0.1) P=0.87 66 38 7.84 (0- 40.6) NA NA 0.0037 P=0.8
Results from Univariable MRPRESSO of Salicyluric acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.01 0.03 0.45 0.65
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Salicyluric acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 22 0.027 (-0.063- 0.12) P=0.55 82 22 0 (0- 72.4) NA NA 0.006 P=0.78
MR-Egger 22 0.012 (-0.14- 0.16) P=0.88 82 22 0 (0- 72.4) 17 0.64 0.006 P=0.78
Weighted median 22 0.017 (-0.13- 0.16) P=0.82 82 22 0 (0- 72.4) NA NA 0.006 P=0.78
Results from Univariable MRPRESSO of Salicyluric acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.03 0.05 0.59 0.56
beta.exposure Outlier-corrected NA NA NA NA

L-Serine

Instruments Associations with L-Serine & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Serine (Shin et al/Long et al) eGFR (CSSCD)
rs1163251(T)/1:120209755* PHGDH (0.6, 0.019, P = 7.1e-27, N = 7824) (0.86, 0.026, P = 0.71, N = 859)
rs3790707(T)/1:120264573* PHGDH (0.027, 0.27, P = 6.1e-09, N = 1957) (0.069, -0.048, P = 0.62, N = 859)
rs12144094(C)/1:120264823 PHGDH (0.85, -0.016, P = 1.8e-07, N = 7824) (0.97, 0.046, P = 0.76, N = 859)
rs921516(A)/1:195854637* intergenic (0.51, 0.0079, P = 8.4e-06, N = 7824) (0.32, -0.027, P = 0.61, N = 859)
rs10863629(A)/1:221682419* RP11-103C3.1 (0.74, 0.01, P = 1.8e-05, N = 7824) (0.92, -0.07, P = 0.43, N = 859)
rs454774(T)/1:30923203* intergenic (0.025, -0.047, P = 2.4e-05, N = 7824) (0.28, -0.046, P = 0.41, N = 859)
rs841845(T)/1:43404713* SLC2A1 (0.78, 0.011, P = 9.2e-06, N = 7824) (0.65, -0.018, P = 0.71, N = 859)
rs6576936(A)/1:84191562 RP11-475O6.1 (0.3, 0.016, P = 1.6e-05, N = 7824) (0.3, 0.0092, P = 0.86, N = 859)
rs12784903(A)/10:124956180* intergenic (0.19, 0.011, P = 1.2e-05, N = 7824) (0.03, -0.22, P = 0.12, N = 859)
rs11248451(T)/10:124973893 AC012391.1 (0.2, 0.0099, P = 4.6e-05, N = 7824) (0.036, -0.14, P = 0.3, N = 859)
rs943097(A)/10:13723773 FRMD4A (0.19, 0.01, P = 4.1e-05, N = 7824) (0.028, -0.011, P = 0.94, N = 859)
rs2277251(T)/10:31996242 RP11-472N13.3 (0.46, 0.0079, P = 9.7e-06, N = 7824) (0.5, 0.035, P = 0.47, N = 859)
rs7908297(A)/10:5251702* AKR1C4 (0.11, 0.016, P = 1.6e-06, N = 7824) (0.033, -0.34, P = 0.013, N = 859)
rs11000319(C)/10:53726843 PRKG1 (0.19, -0.23, P = 4.1e-06, N = 1957) (0.11, 0.1, P = 0.17, N = 859)
rs4747042(A)/10:72263690 PALD1 (0.48, -0.0076, P = 1.3e-05, N = 7824) (0.39, 0.037, P = 0.44, N = 859)
rs580333(A)/10:84643651* NRG3 (0.49, 0.0082, P = 1.8e-06, N = 7824) (0.8, 0.084, P = 0.16, N = 859)
rs2632003(A)/11:11338853* GALNT18 (0.95, -0.02, P = 2.7e-05, N = 7824) (0.8, -0.07, P = 0.24, N = 859)
rs450208(T)/11:2931981 SLC22A18 (0.79, 0.01, P = 2.8e-05, N = 7824) (0.85, 0.0037, P = 0.96, N = 859)
rs1874795(A)/11:80729659 intergenic (0.43, -0.0083, P = 2.3e-06, N = 7824) (0.15, 0.024, P = 0.73, N = 859)
rs7114828(T)/11:95717607 MAML2 (0.041, -0.022, P = 4.2e-05, N = 7824) (0.4, -0.06, P = 0.22, N = 859)
rs12369136(A)/12:20576874 PDE3A (0.99, 0.092, P = 2.1e-05, N = 7824) (0.99, -0.18, P = 0.38, N = 859)
rs1042725(T)/12:66358347* HMGA2 (0.5, -0.0085, P = 8e-07, N = 7824) (0.38, -0.038, P = 0.44, N = 859)
rs7305455(C)/12:73599986* RP11-314D7.2 (0.07, 0.018, P = 1.1e-05, N = 7824) (0.26, 0.02, P = 0.71, N = 859)
rs142170634(TATA)/12:94701019 PLXNC1 (0.19, -0.22, P = 3.2e-06, N = 1957) (0.019, 0.016, P = 0.93, N = 859)
rs10478(T)/13:30777202* KATNAL1 (0.54, -0.0071, P = 3.8e-05, N = 7824) (0.88, -0.037, P = 0.62, N = 859)
rs540497(T)/13:80905334 SPRY2 (0.033, -0.041, P = 1.9e-05, N = 7824) (0.35, 0.013, P = 0.8, N = 859)
rs440371(C)/13:89058784 intergenic (0.99, 0.038, P = 2.5e-05, N = 7824) (0.93, -0.049, P = 0.61, N = 859)
rs4773797(T)/13:95136420* DCT (0.55, 0.0072, P = 3.5e-05, N = 7824) (0.29, 0.013, P = 0.81, N = 859)
rs10483419(T)/14:33168063* AKAP6 (0.44, -0.0074, P = 2.1e-05, N = 7824) (0.23, -0.087, P = 0.14, N = 859)
rs12433855(A)/14:49051094 intergenic (0.51, -0.0073, P = 3.3e-05, N = 7824) (0.54, -0.052, P = 0.29, N = 859)
rs268817(A)/14:58029965* SLC35F4 (0.27, 0.01, P = 2e-05, N = 7824) (0.047, 0.2, P = 0.078, N = 859)
rs59356185(A)/15:30985526 ARHGAP11B (0.17, 0.76, P = 3.6e-06, N = 1957) (0.3, -0.042, P = 0.42, N = 859)
rs1457244(A)/15:37783906* RP11-720L8.1 (0.46, 0.0073, P = 2.9e-05, N = 7824) (0.33, -0.0099, P = 0.84, N = 859)
rs1143115(T)/15:93452297* CHD2 (0.53, -0.014, P = 3.5e-05, N = 7824) (0.59, -0.054, P = 0.25, N = 859)
rs1420235(T)/16:49691859 ZNF423 (0.16, -0.013, P = 2.5e-05, N = 7824) (0.051, -0.11, P = 0.29, N = 859)
rs6564181(A)/16:74905905* WDR59 (0.45, 0.0078, P = 8.2e-06, N = 7824) (0.52, 0.0044, P = 0.93, N = 859)
rs10514413(C)/16:77342569 ADAMTS18 (0.024, -0.27, P = 9.9e-06, N = 1957) (0.029, 0.073, P = 0.62, N = 859)
rs2959520(A)/18:19362376 MIB1 (0.98, -0.054, P = 3.7e-05, N = 7824) (0.81, -0.072, P = 0.24, N = 859)
rs4800190(T)/18:22453101* RP11-449D8.5 (0.85, 0.01, P = 4.4e-05, N = 7824) (0.95, -0.036, P = 0.75, N = 859)
rs11659824(T)/18:36729428 intergenic (0.5, 0.0071, P = 3.4e-05, N = 7824) (0.23, 0.0068, P = 0.9, N = 859)
rs1442089(A)/18:51107079* RP11-202D1.2 (0.91, -0.014, P = 1.9e-05, N = 7824) (0.64, 0.028, P = 0.58, N = 859)
rs34734297(A)/18:67283673 DOK6 (0.6, -0.26, P = 2e-06, N = 1957) (0.55, -0.047, P = 0.33, N = 859)
rs10426856(A)/19:33096406* ANKRD27 (0.9, -0.015, P = 4.2e-06, N = 7824) (0.66, 0.058, P = 0.26, N = 859)
rs12621772(T)/2:114913436 intergenic (0.23, 0.012, P = 1.2e-06, N = 7824) (0.55, 0.044, P = 0.36, N = 859)
rs6740983(T)/2:114913608 intergenic (0.78, -0.012, P = 1.2e-06, N = 7824) (0.45, -0.043, P = 0.37, N = 859)
rs6431176(T)/2:127533079 intergenic (0.36, -0.01, P = 8.3e-06, N = 7824) (0.41, -0.011, P = 0.81, N = 859)
rs7573748(T)/2:160701198* LY75-CD302 (0.83, -0.019, P = 2.4e-05, N = 7824) (0.56, -0.074, P = 0.13, N = 859)
rs12992925(A)/2:179860406 CCDC141 (0.58, 0.0084, P = 1.3e-06, N = 7824) (0.21, 0.11, P = 0.052, N = 859)
rs3900115(A)/2:202050677* CASP10 (0.48, 0.0074, P = 1.8e-05, N = 7824) (0.5, 0.023, P = 0.62, N = 859)
rs7579488(T)/2:207995116* KLF7 (0.9, 0.016, P = 3.7e-05, N = 7824) (0.61, -0.035, P = 0.48, N = 859)
rs715(T)/2:211543055* CPS1 (0.71, -0.022, P = 2.7e-21, N = 7824) (0.81, -0.061, P = 0.33, N = 859)
rs1990797(C)/2:211641068* intergenic (0.17, -0.011, P = 3.7e-05, N = 7824) (0.024, -0.12, P = 0.45, N = 859)
rs986294(A)/2:211671984* intergenic (0.24, 0.015, P = 1.7e-09, N = 7824) (0.12, -0.13, P = 0.079, N = 859)
rs4130275(T)/2:211730557* intergenic (0.83, 0.013, P = 8e-07, N = 7824) (0.73, 0.011, P = 0.84, N = 859)
rs13394054(A)/2:211742818* intergenic (0.39, -0.01, P = 1e-05, N = 7824) (0.63, -0.064, P = 0.2, N = 859)
rs4663379(A)/2:235209795 intergenic (0.89, 0.014, P = 7.8e-06, N = 7824) (0.98, -0.12, P = 0.45, N = 859)
rs1111967(T)/2:45443480 LINC01121 (0.77, 0.011, P = 1.6e-05, N = 7824) (0.93, 0.18, P = 0.057, N = 859)
rs11563112(T)/2:52038675* AC007682.1 (0.39, 0.0094, P = 3.7e-05, N = 7824) (0.66, -0.099, P = 0.051, N = 859)
rs1541543(T)/2:59799996 RP11-444A22.1 (0.62, 0.01, P = 1.9e-05, N = 7824) (0.61, -0.089, P = 0.073, N = 859)
rs13033420(T)/2:98758323 VWA3B (0.44, 0.0082, P = 1.9e-06, N = 7824) (0.46, 0.033, P = 0.5, N = 859)
rs390836(A)/20:15057002* MACROD2 (0.42, -0.0074, P = 2.1e-05, N = 7824) (0.25, -0.03, P = 0.58, N = 859)
rs6069057(C)/20:36806809* intergenic (0.87, 0.013, P = 4.3e-05, N = 7824) (0.91, -0.087, P = 0.31, N = 859)
rs4925188(A)/20:60195570* CDH4 (0.74, -0.0099, P = 2.2e-05, N = 7824) (0.24, 0.033, P = 0.55, N = 859)
rs1001972(C)/21:42147762* DSCAM (0.82, 0.011, P = 8.4e-06, N = 7824) (0.88, -0.017, P = 0.82, N = 859)
rs9981086(T)/21:45446328* TRAPPC10 (0.061, -0.22, P = 6.3e-06, N = 1957) (0.24, 0.17, P = 0.0031, N = 859)
rs17760136(A)/22:22380667* PRAMENP (0.18, -0.022, P = 1.5e-05, N = 7824) (0.022, -0.33, P = 0.048, N = 859)
rs5751770(T)/22:24252842* AP000350.5 (0.37, 0.014, P = 4.9e-05, N = 7824) (0.46, -0.04, P = 0.41, N = 859)
rs131460(A)/22:24931490* GUCD1 (0.17, -0.02, P = 1.8e-05, N = 7824) (0.51, -0.0086, P = 0.86, N = 859)
rs3184121(A)/3:124686733 HEG1 (0.21, -0.01, P = 2e-05, N = 7824) (0.2, -0.068, P = 0.26, N = 859)
rs9874508(A)/3:125902417* ALDH1L1 (0.46, -0.0084, P = 1.4e-06, N = 7824) (0.67, 0.048, P = 0.34, N = 859)
rs67138915(C)/3:13907483 WNT7A (0.17, -0.2, P = 1e-05, N = 1957) (0.24, 0.022, P = 0.7, N = 859)
rs11718229(A)/3:148487600* intergenic (0.15, 0.013, P = 2.1e-05, N = 7824) (0.13, 0.16, P = 0.028, N = 859)
rs701120(C)/3:154102004* GPR149 (0.85, 0.01, P = 4.2e-05, N = 7824) (0.81, -0.086, P = 0.16, N = 859)
rs9882567(T)/3:188988930 TPRG1 (0.05, -0.02, P = 1.1e-05, N = 7824) (0.16, 0.032, P = 0.62, N = 859)
rs941348(T)/3:22113690* ZNF385D (0.2, -0.011, P = 7.1e-06, N = 7824) (0.19, -0.086, P = 0.16, N = 859)
rs12715076(A)/3:26002178* intergenic (0.78, -0.01, P = 1.6e-05, N = 7824) (0.85, 0.029, P = 0.67, N = 859)
rs1388509(C)/3:68354402 FAM19A1 (0.075, -0.24, P = 5.7e-07, N = 1957) (0.024, -0.045, P = 0.78, N = 859)
rs11942744(T)/4:12360579* intergenic (0.98, 0.055, P = 4.5e-05, N = 7824) (0.83, -0.051, P = 0.42, N = 859)
rs2320467(A)/4:18179501 intergenic (0.26, 0.01, P = 1.2e-05, N = 7824) (0.08, -0.0073, P = 0.93, N = 859)
rs4241779(A)/4:184600601* TRAPPC11 (0.58, 0.0082, P = 2.8e-06, N = 7824) (0.37, 0.035, P = 0.49, N = 859)
rs16844542(A)/4:3524909 LRPAP1 (0.97, -0.03, P = 2.4e-05, N = 7824) (0.96, -0.012, P = 0.92, N = 859)
rs4865070(A)/4:57093826 KIAA1211 (0.11, -0.21, P = 8.5e-06, N = 1957) (0.24, -0.053, P = 0.35, N = 859)
rs36790(T)/5:109331459 intergenic (0.74, -0.25, P = 1.5e-06, N = 1957) (0.44, 0.036, P = 0.45, N = 859)
rs197442(A)/5:116861349 LINC00992 (0.6, 0.01, P = 7.6e-06, N = 7824) (0.19, -0.093, P = 0.13, N = 859)
rs403636(A)/5:1438354* SLC6A3 (0.15, -0.012, P = 5.9e-06, N = 7824) (0.28, -0.064, P = 0.23, N = 859)
rs10040689(A)/5:149097211 RN7SL868P (0.53, 0.0082, P = 1.8e-06, N = 7824) (0.65, -0.02, P = 0.69, N = 859)
rs342563(A)/5:16187424 RP11-19O2.2 (0.47, -0.01, P = 7.9e-06, N = 7824) (0.56, -0.0027, P = 0.96, N = 859)
rs17658389(T)/5:172205155* RP11-779O18.3 (0.36, -0.015, P = 3.3e-05, N = 7824) (0.18, -2.8e-05, P = 1, N = 859)
rs11953664(T)/5:23696111 intergenic (0.41, -0.007, P = 4.7e-05, N = 7824) (0.44, -0.0018, P = 0.97, N = 859)
rs710998(T)/5:3591916* IRX1 (0.92, 0.014, P = 5e-05, N = 7824) (0.75, 0.033, P = 0.55, N = 859)
rs1645273(T)/5:53383314 ARL15 (0.78, -0.01, P = 2.1e-05, N = 7824) (0.55, 0.089, P = 0.071, N = 859)
rs35107028(A)/5:93051362 FAM172A (0.1, -0.17, P = 5.4e-07, N = 1957) (0.024, 0.14, P = 0.38, N = 859)
rs9373846(A)/6:106778384 ATG5 (0.81, 0.011, P = 8.9e-06, N = 7824) (0.88, 0.15, P = 0.051, N = 859)
rs6933154(T)/6:129141684 intergenic (0.58, 0.0096, P = 2.4e-05, N = 7824) (0.48, 0.1, P = 0.036, N = 859)
rs12663563(C)/6:25339003 LRRC16A (0.047, -0.021, P = 8.2e-06, N = 7824) (0.099, 0.039, P = 0.63, N = 859)
rs2269713(A)/6:31141127* POU5F1 (0.98, 0.032, P = 1.1e-06, N = 7824) (0.82, -0.013, P = 0.84, N = 859)
rs2762343(A)/6:35066091* intergenic (0.51, 0.0083, P = 1.2e-06, N = 7824) (0.78, -0.039, P = 0.5, N = 859)
rs74394751(A)/6:76964078 intergenic (0.079, -0.97, P = 8.4e-06, N = 1957) (0.015, 0.29, P = 0.15, N = 859)
rs9450325(T)/6:86475814* intergenic (0.56, 0.007, P = 4.8e-05, N = 7824) (0.53, -0.044, P = 0.37, N = 859)
rs17154498(A)/7:107468125 intergenic (0.2, -0.011, P = 6.3e-06, N = 7824) (0.12, 0.1, P = 0.18, N = 859)
rs2189725(A)/7:15041873* intergenic (0.46, 0.0073, P = 4e-05, N = 7824) (0.42, -0.12, P = 0.011, N = 859)
rs4726207(T)/7:152496656 ACTR3B (0.63, 0.01, P = 1.5e-05, N = 7824) (0.34, 0.015, P = 0.77, N = 859)
rs6946890(T)/7:154384796* DPP6 (0.53, -0.0075, P = 1.6e-05, N = 7824) (0.71, -0.057, P = 0.28, N = 859)
rs4338001(A)/7:33701080 intergenic (0.042, 0.023, P = 4.9e-05, N = 7824) (0.051, -0.04, P = 0.72, N = 859)
rs4947534(T)/7:56079094* PSPH (0.25, -0.018, P = 2e-14, N = 7824) (0.37, -0.046, P = 0.35, N = 859)
rs4717437(A)/7:67633440* RP5-945F2.3 (0.31, -0.01, P = 3.8e-05, N = 7824) (0.52, -0.036, P = 0.45, N = 859)
rs7779884(A)/7:76949393* GSAP (0.51, 0.0072, P = 3.5e-05, N = 7824) (0.78, 0.034, P = 0.56, N = 859)
rs38971(A)/7:88956699* ZNF804B (0.83, 0.011, P = 1.9e-05, N = 7824) (0.81, 0.013, P = 0.83, N = 859)
rs11982782(A)/7:94063700* COL1A2 (0.082, -0.017, P = 7.9e-06, N = 7824) (0.5, -0.03, P = 0.53, N = 859)
rs17166293(A)/7:94081432 intergenic (0.081, -0.017, P = 1.3e-05, N = 7824) (0.013, -0.19, P = 0.38, N = 859)
rs12334472(G)/8:55452455 intergenic (0.52, 0.38, P = 5.4e-06, N = 1957) (0.35, -0.019, P = 0.7, N = 859)
rs2979710(A)/8:80652442 intergenic (0.88, -0.013, P = 3.4e-05, N = 7824) (0.8, 0.087, P = 0.13, N = 859)
rs10978424(A)/9:108877072 intergenic (0.047, 0.02, P = 2.9e-05, N = 7824) (0.03, -0.016, P = 0.91, N = 859)
rs315711(A)/9:114548451 C9orf84 (0.54, 0.0073, P = 2.7e-05, N = 7824) (0.49, 0.024, P = 0.61, N = 859)
rs7022371(T)/9:114601074* RNU6-1013P (0.5, 0.0086, P = 6.5e-07, N = 7824) (0.71, -0.0059, P = 0.91, N = 859)
rs28465292(T)/9:115708237 intergenic (0.21, -0.27, P = 9e-06, N = 1957) (0.31, -0.045, P = 0.39, N = 859)
rs10283912(T)/9:12285170 RP11-71E22.1 (0.51, -0.0076, P = 1.3e-05, N = 7824) (0.76, 0.11, P = 0.056, N = 859)
rs10812054(A)/9:24495241* intergenic (0.51, -0.0083, P = 2.6e-06, N = 7824) (0.68, -0.021, P = 0.68, N = 859)
rs10972101(T)/9:34417750* FAM219A (0.11, -0.014, P = 6.9e-06, N = 7824) (0.013, 0.44, P = 0.03, N = 859)
rs572099418(GTT)/9:34608298 RPP25L (0.042, -0.19, P = 3.7e-06, N = 1957) (0.038, -0.14, P = 0.26, N = 859)
rs144362640(A)/9:71839441 TJP2 (0.091, 0.25, P = 8.7e-06, N = 1957) (0.04, 0.22, P = 0.073, N = 859)
Results from Univariable Mendelian Randomization of L-Serine & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 121 -0.053 (-0.15- 0.046) P=0.29 10 55 0.00115 (0- 96.1) NA NA 0.0065 P=0.31
MR-Egger 121 -0.074 (-0.18- 0.033) P=0.18 10 55 0.00115 (0- 96.1) 138 0.11 0.0065 P=0.31
Weighted median 121 -0.055 (-0.19- 0.078) P=0.42 10 55 0.00115 (0- 96.1) NA NA 0.0065 P=0.31
Results from Univariable MRPRESSO of L-Serine & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.05 -1.05 0.3
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Serine & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 59 -0.03 (-0.13- 0.066) P=0.54 20 54 0 (0- 96.7) NA NA 0.0085 P=0.37
MR-Egger 59 -0.053 (-0.16- 0.056) P=0.34 20 54 0 (0- 96.7) 59 0.4 0.0085 P=0.37
Weighted median 59 -0.054 (-0.18- 0.076) P=0.41 20 54 0 (0- 96.7) NA NA 0.0085 P=0.37
Results from Univariable MRPRESSO of L-Serine & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.05 -0.61 0.54
beta.exposure Outlier-corrected NA NA NA NA

Sorbitol

Instruments Associations with Sorbitol & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Sorbitol (Shin et al/Long et al) eGFR (CSSCD)
rs1343274(T)/1:112875033* RP5-965F6.2 (0.95, 0.088, P = 1.6e-05, N = 7824) (0.79, -0.0031, P = 0.96, N = 859)
rs12720497(T)/1:186830420* PLA2G4A (0.29, -0.056, P = 1.7e-05, N = 7824) (0.11, -0.21, P = 0.0088, N = 859)
rs6687118(A)/1:86551785 COL24A1 (0.96, -0.17, P = 2e-05, N = 7824) (0.68, -0.041, P = 0.42, N = 859)
rs6657899(T)/1:86703902* intergenic (0.032, 0.19, P = 8e-06, N = 7824) (0.038, 0.1, P = 0.41, N = 859)
rs6658767(T)/1:94529895* ABCA4 (0.042, 0.095, P = 2.8e-05, N = 7824) (0.014, 0.14, P = 0.49, N = 859)
rs4917405(T)/10:105638232 OBFC1 (0.044, 0.097, P = 6.3e-06, N = 7824) (0.087, 0.15, P = 0.083, N = 859)
rs12269274(A)/10:2724048* intergenic (0.11, -0.059, P = 4.3e-05, N = 7824) (0.059, 0.062, P = 0.56, N = 859)
rs656587(A)/11:128624028* FLI1 (0.3, -0.078, P = 2.9e-05, N = 7824) (0.094, -0.11, P = 0.2, N = 859)
rs1516988(T)/11:35479735 PAMR1 (0.46, -0.037, P = 4.7e-05, N = 7824) (0.31, 0.041, P = 0.45, N = 859)
rs7303378(A)/12:22258068 ST8SIA1 (0.88, 0.062, P = 1.1e-05, N = 7824) (0.98, -0.17, P = 0.33, N = 859)
rs2900501(T)/12:22387507* ST8SIA1 (0.5, -0.04, P = 1.9e-05, N = 7824) (0.51, 0.049, P = 0.31, N = 859)
rs488225(A)/12:3229827 TSPAN9 (0.39, -0.041, P = 4.9e-06, N = 7824) (0.37, -0.041, P = 0.42, N = 859)
rs1570553(A)/13:76281653* RP11-29G8.3 (0.97, -0.19, P = 2.2e-05, N = 7824) (0.79, 0.076, P = 0.21, N = 859)
rs1998053(A)/14:101320034* MEG3 (0.086, 0.072, P = 5.6e-06, N = 7824) (0.011, -0.04, P = 0.86, N = 859)
rs17488344(T)/14:32909977* AKAP6 (0.9, -0.065, P = 1.8e-05, N = 7824) (0.96, 0.12, P = 0.33, N = 859)
rs7178693(A)/15:51394298 TNFAIP8L3 (0.038, 0.096, P = 3.7e-05, N = 7824) (0.037, -0.1, P = 0.42, N = 859)
rs4489954(T)/15:68072075* MAP2K5 (0.3, -0.041, P = 2.3e-05, N = 7824) (0.35, 0.038, P = 0.46, N = 859)
rs1053730(A)/16:1560886 IFT140 (0.74, -0.073, P = 3.1e-05, N = 7824) (0.42, -0.08, P = 0.1, N = 859)
rs7184992(T)/16:27432010* IL21R (0.3, 0.081, P = 1.3e-06, N = 7824) (0.4, -0.035, P = 0.47, N = 859)
rs1862858(A)/16:55320317 RP11-26L20.3 (0.024, 0.12, P = 4.8e-05, N = 7824) (0.15, 0.041, P = 0.54, N = 859)
rs1020065(T)/16:55369954* RP11-26L20.3 (0.021, 0.14, P = 1.2e-05, N = 7824) (0.11, 0.057, P = 0.45, N = 859)
rs2926133(C)/16:64282835* AC012322.1 (0.41, -0.038, P = 1.5e-05, N = 7824) (0.35, 0.047, P = 0.36, N = 859)
rs16967757(T)/16:64636513* RP11-467L24.1 (0.3, 0.05, P = 1.4e-06, N = 7824) (0.27, 0.025, P = 0.64, N = 859)
rs12934440(A)/16:82458443* intergenic (0.17, -0.059, P = 1.2e-05, N = 7824) (0.29, -0.066, P = 0.23, N = 859)
rs7240261(T)/18:5428938* EPB41L3 (0.56, 0.057, P = 7.5e-06, N = 7824) (0.57, -0.053, P = 0.27, N = 859)
rs317914(T)/19:11476599* DKFZP761J1410 (0.01, 0.35, P = 1.2e-05, N = 7824) (0.11, -0.052, P = 0.5, N = 859)
rs6434811(T)/2:196866420* DNAH7 (0.93, -0.079, P = 3.5e-06, N = 7824) (0.28, 0.067, P = 0.2, N = 859)
rs4831124(T)/3:115945873 LSAMP (0.68, 0.041, P = 4.2e-05, N = 7824) (0.48, 0.018, P = 0.72, N = 859)
rs6786557(A)/3:16766989* intergenic (0.02, 0.14, P = 1.9e-05, N = 7824) (0.2, -0.039, P = 0.5, N = 859)
rs1384953(T)/3:176178846 intergenic (0.63, -0.039, P = 4.1e-05, N = 7824) (0.48, 0.007, P = 0.88, N = 859)
rs10017961(A)/4:141000337 MAML3 (0.27, 0.049, P = 5.6e-06, N = 7824) (0.15, 0.038, P = 0.58, N = 859)
rs2365522(A)/4:72776163 intergenic (0.71, 0.044, P = 6.7e-06, N = 7824) (0.75, 0.056, P = 0.32, N = 859)
rs4859463(T)/4:77760785* intergenic (0.15, -0.053, P = 4.5e-05, N = 7824) (0.19, -0.065, P = 0.28, N = 859)
rs2306337(A)/5:141044472* ARAP3 (0.85, -0.056, P = 1.3e-05, N = 7824) (0.88, 0.0035, P = 0.96, N = 859)
rs4867710(T)/5:172845597* CTB-32H22.1 (0.3, 0.04, P = 4.6e-05, N = 7824) (0.1, -0.034, P = 0.67, N = 859)
rs1532331(T)/5:43116830 ZNF131 (0.7, -0.044, P = 1.9e-05, N = 7824) (0.69, 0.058, P = 0.26, N = 859)
rs1864037(A)/5:65590269 RP11-305P14.1 (0.85, 0.056, P = 1e-05, N = 7824) (0.89, 0.053, P = 0.5, N = 859)
rs9344148(T)/6:82018723* intergenic (0.75, 0.043, P = 4.9e-05, N = 7824) (0.95, -0.0069, P = 0.95, N = 859)
rs11487092(A)/7:107693740* LAMB4 (0.012, 0.25, P = 2.9e-06, N = 7824) (0.58, -0.0046, P = 0.92, N = 859)
rs7809511(A)/7:4240975* SDK1 (0.68, -0.041, P = 2.8e-05, N = 7824) (0.5, 0.014, P = 0.78, N = 859)
rs898931(A)/7:46390643* intergenic (0.15, 0.087, P = 2.1e-05, N = 7824) (0.36, -0.053, P = 0.28, N = 859)
rs1529225(T)/7:9322476* intergenic (0.08, -0.11, P = 4.8e-05, N = 7824) (0.22, -0.053, P = 0.37, N = 859)
rs4404993(T)/9:19367826* DENND4C (0.18, 0.096, P = 3.2e-06, N = 7824) (0.038, 0.01, P = 0.93, N = 859)
rs10811658(A)/9:22128600* intergenic (0.26, -0.061, P = 6.2e-06, N = 7824) (0.45, -0.025, P = 0.6, N = 859)
Results from Univariable Mendelian Randomization of Sorbitol & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 44 0.0037 (-0.16- 0.17) P=0.97 9.3 5.2 0 (0- 43.9) NA NA 0.0046 P=0.77
MR-Egger 44 -0.032 (-0.33- 0.27) P=0.83 9.3 5.2 0 (0- 43.9) 38 0.65 0.0046 P=0.77
Weighted median 44 -0.029 (-0.29- 0.23) P=0.83 9.3 5.2 0 (0- 43.9) NA NA 0.0046 P=0.77
Results from Univariable MRPRESSO of Sorbitol & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0 0.09 0.04 0.97
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Sorbitol & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 14 0.35 (-2.3e-06- 0.7) P=0.05 7.6 1.4 0 (0- 64.2) NA NA -0.0049 P=0.87
MR-Egger 14 0.4 (-0.36- 1.2) P=0.32 7.6 1.4 0 (0- 64.2) 9.8 0.63 -0.0049 P=0.87
Weighted median 14 0.29 (-0.28- 0.85) P=0.32 7.6 1.4 0 (0- 64.2) NA NA -0.0049 P=0.87
Results from Univariable MRPRESSO of Sorbitol & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.35 0.18 1.96 0.07
beta.exposure Outlier-corrected NA NA NA NA

Sucrose

Instruments Associations with Sucrose & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Sucrose (Shin et al/Long et al) eGFR (CSSCD)
rs72860869(G)/1:9404367* SPSB1 (0.073, 1.4, P = 5.1e-07, N = 1439) (0.31, 0.018, P = 0.73, N = 859)
rs72731803(A)/1:96314983* intergenic (0.15, 1.7, P = 7.5e-06, N = 1439) (0.43, 0.03, P = 0.54, N = 859)
rs845088(C)/10:125208693* RP11-282I1.1 (0.79, 0.6, P = 9e-06, N = 1439) (0.97, 0.34, P = 0.018, N = 859)
rs1893360(C)/11:74399526* RN7SKP297 (0.75, 0.72, P = 7.3e-06, N = 1439) (0.94, -0.08, P = 0.44, N = 859)
rs840225(T)/13:107566858* intergenic (0.41, 0.63, P = 8.6e-06, N = 1439) (0.63, -0.099, P = 0.044, N = 859)
rs2765151(A)/13:24497442* intergenic (0.6, 1.4, P = 6.9e-06, N = 1439) (0.18, -0.12, P = 0.058, N = 859)
rs7151852(A)/14:67945022* TMEM229B (0.026, 1.3, P = 2e-06, N = 1439) (0.036, 0.19, P = 0.14, N = 859)
rs472591(G)/18:40483622* RIT2 (0.76, 1.7, P = 6.4e-06, N = 1439) (0.32, 0.056, P = 0.27, N = 859)
rs60172187(T)/18:9734084* RAB31 (0.05, 1.7, P = 1.9e-06, N = 1439) (0.15, 0.039, P = 0.56, N = 859)
rs34700006(G)/2:175149309* intergenic (0.41, 1.7, P = 5.9e-06, N = 1439) (0.23, 0.1, P = 0.085, N = 859)
rs1413421(A)/20:56580881* intergenic (0.37, 1.7, P = 5.2e-06, N = 1439) (0.36, -0.11, P = 0.04, N = 859)
rs4693441(C)/4:83386179* ENOPH1 (0.45, 0.22, P = 4.3e-06, N = 1439) (0.74, 0.064, P = 0.25, N = 859)
rs17085250(A)/6:149610639* RN7SL234P (0.11, -0.19, P = 7.5e-06, N = 1439) (0.14, 0.025, P = 0.71, N = 859)
rs7767685(A)/6:20276539* RP11-239H6.2 (0.27, 1.7, P = 9.9e-06, N = 1439) (0.12, -0.041, P = 0.58, N = 859)
rs4721056(G)/7:12251262* TMEM106B (0.55, 1.7, P = 6.8e-06, N = 1439) (0.71, -0.049, P = 0.36, N = 859)
rs6945187(C)/7:12509538* AC013470.6 (0.49, 1.7, P = 9.9e-06, N = 1439) (0.6, 0.059, P = 0.23, N = 859)
rs1593306(A)/7:131613963* AC009518.4 (0.92, 0.74, P = 2.8e-06, N = 1439) (0.59, 0.011, P = 0.82, N = 859)
rs6944685(T)/7:85356747* intergenic (0.31, 0.59, P = 3.4e-06, N = 1439) (0.34, -0.028, P = 0.59, N = 859)
rs1457777(T)/8:133272817* KCNQ3 (0.52, 1.7, P = 9.6e-06, N = 1439) (0.17, -0.02, P = 0.76, N = 859)
rs4872085(C)/8:23075488* TNFRSF10A (0.43, 1.5, P = 9.9e-06, N = 1439) (0.15, -0.026, P = 0.7, N = 859)
Results from Univariable Mendelian Randomization of Sucrose & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 20 -0.00022 (-0.024- 0.024) P=0.99 -1531 1323 24.2 (0- 89.6) NA NA -0.013 P=0.77
MR-Egger 20 0.0086 (-0.054- 0.071) P=0.79 -1531 1323 24.2 (0- 89.6) 30 0.04 -0.013 P=0.77
Weighted median 20 0.014 (-0.014- 0.042) P=0.32 -1531 1323 24.2 (0- 89.6) NA NA -0.013 P=0.77

Results from Univariable MRPRESSO of Sucrose & eGFR - model1

Results from Univariable Mendelian Randomization of Sucrose & eGFR - model2

Results from Univariable MRPRESSO of Sucrose & eGFR - model2

L-Tryptophan

Instruments Associations with L-Tryptophan & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region L-Tryptophan (Shin et al/Long et al) eGFR (CSSCD)
rs2798184(T)/1:109096332 intergenic (0.43, -0.0049, P = 6.4e-08, N = 7824) (0.25, 0.0016, P = 0.98, N = 859)
rs2432(T)/1:114631980 SYT6 (0.47, 0.0046, P = 4.3e-07, N = 7824) (0.19, -0.019, P = 0.75, N = 859)
rs148210(T)/1:114749024 RP4-543J13.1 (0.47, -0.0036, P = 4.9e-05, N = 7824) (0.44, -0.024, P = 0.62, N = 859)
rs12021645(T)/1:146716517 CHD1L (0.064, -0.35, P = 5.7e-06, N = 1959) (0.26, -0.012, P = 0.83, N = 859)
rs6426929(A)/1:154750989 KCNN3 (0.46, 0.0039, P = 1.4e-05, N = 7824) (0.52, -0.021, P = 0.65, N = 859)
rs11582932(T)/1:160369372 VANGL2 (0.64, 0.0039, P = 1.7e-05, N = 7824) (0.68, -0.055, P = 0.3, N = 859)
rs2819322(T)/1:162281028* NOS1AP (0.46, -0.0038, P = 3.3e-05, N = 7824) (0.44, -0.035, P = 0.48, N = 859)
rs2071921(T)/1:167825485 ADCY10 (0.59, 0.0037, P = 4.8e-05, N = 7824) (0.54, 0.011, P = 0.82, N = 859)
rs6685230(T)/1:168368154 RP5-968D22.1 (0.4, -0.0042, P = 7.8e-06, N = 7824) (0.083, 0.0072, P = 0.93, N = 859)
rs2977272(T)/1:17536952* PADI1 (0.34, 0.005, P = 5.7e-07, N = 7824) (0.079, -0.028, P = 0.75, N = 859)
rs12564117(T)/1:179625501 TDRD5 (0.6, 0.004, P = 1.1e-05, N = 7824) (0.66, -0.028, P = 0.57, N = 859)
rs16823952(T)/1:185342562 intergenic (0.91, -0.0083, P = 5.1e-06, N = 7824) (0.91, 0.019, P = 0.82, N = 859)
rs1412972(T)/1:190245977 BRINP3 (0.5, 0.0097, P = 1.6e-06, N = 7824) (0.76, 0.079, P = 0.15, N = 859)
rs17336405(T)/1:204875330 NFASC (0.25, -0.16, P = 5.9e-06, N = 1959) (0.1, -0.06, P = 0.46, N = 859)
rs12754274(T)/1:206670827 IKBKE (0.48, -0.0038, P = 2.9e-05, N = 7824) (0.37, 0.098, P = 0.05, N = 859)
rs6667202(A)/1:206957092 intergenic (0.56, 0.0039, P = 2.3e-05, N = 7824) (0.47, -0.03, P = 0.53, N = 859)
rs7552506(C)/1:209969902 IRF6 (0.35, 0.0037, P = 4.7e-05, N = 7824) (0.25, -0.044, P = 0.43, N = 859)
rs3845524(T)/1:215886709 USH2A (0.39, 0.0038, P = 2.3e-05, N = 7824) (0.42, -0.001, P = 0.98, N = 859)
rs10495209(T)/1:223656537 intergenic (0.49, 0.004, P = 8e-06, N = 7824) (0.38, -0.081, P = 0.11, N = 859)
rs881979(C)/1:231435280 intergenic (0.099, 0.0074, P = 2.5e-05, N = 7824) (0.017, -0.29, P = 0.12, N = 859)
rs10927101(A)/1:244173872 RP11-278H7.1 (0.37, -0.0046, P = 2.7e-07, N = 7824) (0.51, 0.017, P = 0.74, N = 859)
rs1704427(T)/1:245566986 KIF26B (0.43, 0.0037, P = 3.9e-05, N = 7824) (0.42, 0.11, P = 0.022, N = 859)
rs10802308(T)/1:246152478* SMYD3 (0.9, 0.0072, P = 3e-05, N = 7824) (0.63, -0.11, P = 0.034, N = 859)
rs502654(T)/1:31061501 intergenic (0.56, -0.0046, P = 2.6e-07, N = 7824) (0.19, -0.036, P = 0.54, N = 859)
rs4073324(T)/1:3797995 DFFB (0.55, -0.004, P = 1.4e-05, N = 7824) (0.47, 0.018, P = 0.71, N = 859)
rs688627(T)/1:44048283* PTPRF (0.59, 0.0042, P = 3.6e-06, N = 7824) (0.29, -0.089, P = 0.093, N = 859)
rs9793263(A)/1:46722389* RAD54L (0.41, 0.0037, P = 4e-05, N = 7824) (0.64, -0.013, P = 0.8, N = 859)
rs4926571(T)/1:53096614* FAM159A (0.52, -0.0048, P = 9e-08, N = 7824) (0.14, 0.016, P = 0.81, N = 859)
rs699856(T)/1:75089136* C1orf173 (0.37, 0.004, P = 8e-06, N = 7824) (0.17, 0.065, P = 0.31, N = 859)
rs11804149(T)/1:77457748 ST6GALNAC5 (0.47, 0.0041, P = 4.6e-06, N = 7824) (0.21, -0.014, P = 0.82, N = 859)
rs7545284(A)/1:8192898 intergenic (0.43, -0.0038, P = 3.5e-05, N = 7824) (0.19, 0.019, P = 0.76, N = 859)
rs2209695(A)/1:82974427 intergenic (0.53, -0.0038, P = 2.2e-05, N = 7824) (0.69, 0.052, P = 0.32, N = 859)
rs11802417(T)/1:84276046 RP11-475O6.1 (0.58, -0.0041, P = 4.5e-06, N = 7824) (0.71, 0.012, P = 0.82, N = 859)
rs17130048(A)/1:88051115 intergenic (0.99, -0.039, P = 4.3e-05, N = 7824) (0.82, 0.033, P = 0.61, N = 859)
rs2813760(A)/1:90569361* intergenic (0.58, 0.0044, P = 1.2e-06, N = 7824) (0.63, -0.0062, P = 0.9, N = 859)
rs284191(A)/1:92236048 TGFBR3 (0.61, -0.006, P = 2e-09, N = 7824) (0.44, -0.074, P = 0.13, N = 859)
rs7909316(A)/10:108518774 SORCS1 (0.14, 0.007, P = 1.9e-05, N = 7824) (0.3, -0.05, P = 0.34, N = 859)
rs11195297(A)/10:112498838 RBM20 (0.43, 0.0039, P = 1.8e-05, N = 7824) (0.46, 0.044, P = 0.39, N = 859)
rs151598(A)/10:115697178 intergenic (0.42, -0.0039, P = 1.1e-05, N = 7824) (0.28, 0.039, P = 0.47, N = 859)
rs2769419(A)/10:117395006 ATRNL1 (0.48, 0.004, P = 6.2e-06, N = 7824) (0.43, 0.043, P = 0.36, N = 859)
rs4611118(A)/10:122395120 intergenic (0.61, -0.0044, P = 9.4e-07, N = 7824) (0.48, 0.0037, P = 0.94, N = 859)
rs4751282(T)/10:129164681 DOCK1 (0.54, 0.0045, P = 7.4e-07, N = 7824) (0.58, -0.042, P = 0.39, N = 859)
rs4880221(C)/10:134729792 TTC40 (0.29, 0.2, P = 9.1e-06, N = 1959) (0.15, 0.058, P = 0.39, N = 859)
rs1879606(T)/10:14272502 FRMD4A (0.38, 0.004, P = 1.7e-05, N = 7824) (0.24, 0.041, P = 0.48, N = 859)
rs2688858(T)/10:14764993 FAM107B (0.57, 0.0043, P = 2.8e-06, N = 7824) (0.82, -0.011, P = 0.87, N = 859)
rs7072433(T)/10:15231980 intergenic (0.43, 0.0039, P = 3.3e-05, N = 7824) (0.39, -0.1, P = 0.043, N = 859)
rs4880888(A)/10:1661627 ADARB2 (0.48, -0.0046, P = 3.2e-07, N = 7824) (0.58, 0.083, P = 0.09, N = 859)
rs17294277(T)/10:1919532 intergenic (0.95, -0.011, P = 1.8e-05, N = 7824) (0.92, 0.013, P = 0.88, N = 859)
rs1409344(A)/10:20290956 PLXDC2 (0.53, 0.0037, P = 4e-05, N = 7824) (0.34, -0.022, P = 0.66, N = 859)
rs11012548(T)/10:21446033 NEBL (0.12, -0.0071, P = 4.2e-05, N = 7824) (0.081, 0.1, P = 0.25, N = 859)
rs2250411(T)/10:24833137 KIAA1217 (0.4, -0.004, P = 1.2e-05, N = 7824) (0.28, 0.083, P = 0.12, N = 859)
rs2367059(A)/10:24864127 intergenic (0.47, -0.0046, P = 4e-07, N = 7824) (0.45, -0.079, P = 0.11, N = 859)
rs2484178(T)/10:27691799 PTCHD3 (0.61, 0.0043, P = 1.7e-06, N = 7824) (0.56, 0.0022, P = 0.96, N = 859)
rs2388594(A)/10:3137445* PFKP (0.38, -0.0037, P = 3.5e-05, N = 7824) (0.43, 0.042, P = 0.41, N = 859)
rs1332772(A)/10:36891028 intergenic (0.39, 0.0037, P = 4.3e-05, N = 7824) (0.29, -0.028, P = 0.62, N = 859)
rs2505644(T)/10:44175098* ZNF32-AS3 (0.56, 0.005, P = 5.7e-07, N = 7824) (0.58, -0.056, P = 0.25, N = 859)
rs6480970(A)/10:54568664 intergenic (0.62, -0.0049, P = 4.3e-08, N = 7824) (0.45, -0.072, P = 0.14, N = 859)
rs11593406(T)/10:58772842* intergenic (0.55, 0.0037, P = 3.6e-05, N = 7824) (0.14, -0.068, P = 0.31, N = 859)
rs10822056(T)/10:64514111* intergenic (0.51, 0.0042, P = 2.7e-06, N = 7824) (0.6, -0.077, P = 0.11, N = 859)
rs938040(T)/10:65738183 RP11-170M17.1 (0.11, 0.0074, P = 9.1e-06, N = 7824) (0.4, 0.033, P = 0.5, N = 859)
rs10822442(A)/10:66844316 intergenic (0.5, 0.0037, P = 3.5e-05, N = 7824) (0.47, -0.036, P = 0.45, N = 859)
rs11201034(A)/10:81745367 RP11-479O17.7 (0.61, 0.0043, P = 1.9e-06, N = 7824) (0.54, -0.048, P = 0.31, N = 859)
rs2488631(A)/10:86349294 intergenic (0.37, 0.0038, P = 2.6e-05, N = 7824) (0.26, -0.015, P = 0.79, N = 859)
rs11256264(C)/10:9621246 intergenic (0.55, 0.0038, P = 1.9e-05, N = 7824) (0.83, 0.077, P = 0.23, N = 859)
rs1145411(T)/11:100246959 intergenic (0.56, -0.0037, P = 3.3e-05, N = 7824) (0.2, -0.046, P = 0.44, N = 859)
rs7120953(T)/11:101452193 TRPC6 (0.46, 0.0038, P = 2.5e-05, N = 7824) (0.3, 0.033, P = 0.53, N = 859)
rs6591150(A)/11:105941758 KBTBD3 (0.1, -0.0076, P = 1.1e-05, N = 7824) (0.27, -0.053, P = 0.32, N = 859)
rs17393784(T)/11:105982171 RP11-677I18.4 (0.89, 0.0073, P = 1.5e-05, N = 7824) (0.96, -0.15, P = 0.23, N = 859)
rs2510595(A)/11:106863491 GUCY1A2 (0.61, -0.0045, P = 5e-07, N = 7824) (0.79, -0.027, P = 0.66, N = 859)
rs2091289(A)/11:112187392 RP11-356J5.12 (0.59, 0.0043, P = 1.5e-06, N = 7824) (0.91, 0.0029, P = 0.97, N = 859)
rs603446(T)/11:116654435* ZNF259 (0.44, 0.0051, P = 1.4e-08, N = 7824) (0.18, -0.11, P = 0.067, N = 859)
rs7127212(T)/11:118953202* HMBS (0.4, 0.0038, P = 2.9e-05, N = 7824) (0.65, 0.055, P = 0.27, N = 859)
rs1946084(A)/11:126626203* KIRREL3 (0.39, -0.0037, P = 4.3e-05, N = 7824) (0.53, 0.057, P = 0.24, N = 859)
rs2970335(A)/11:14325401* RRAS2 (0.4, 0.0044, P = 1e-06, N = 7824) (0.4, 0.0082, P = 0.86, N = 859)
rs7109477(A)/11:21413780* NELL1 (0.46, -0.0047, P = 1.9e-07, N = 7824) (0.81, 0.013, P = 0.83, N = 859)
rs179785(A)/11:2781519 KCNQ1 (0.47, 0.0038, P = 2e-05, N = 7824) (0.66, 0.074, P = 0.16, N = 859)
rs10836364(T)/11:35306345* SLC1A2 (0.61, 0.005, P = 5.7e-07, N = 7824) (0.88, -0.041, P = 0.59, N = 859)
rs4755291(A)/11:44821921 TSPAN18 (0.46, -0.0041, P = 5.3e-06, N = 7824) (0.58, -0.077, P = 0.11, N = 859)
rs7934096(T)/11:5748396 OR52P1P (0.54, -0.0037, P = 4.1e-05, N = 7824) (0.64, 0.067, P = 0.19, N = 859)
rs2178260(T)/11:62069365 SCGB1D4 (0.43, 0.0042, P = 3.6e-06, N = 7824) (0.17, 0.0093, P = 0.88, N = 859)
rs590336(T)/11:73708521 UCP3 (0.51, -0.004, P = 6.5e-06, N = 7824) (0.68, 0.049, P = 0.34, N = 859)
rs1790398(T)/11:73801265 C2CD3 (0.52, 0.0048, P = 5.8e-08, N = 7824) (0.12, 0.069, P = 0.36, N = 859)
rs575257(A)/11:78869070 TENM4 (0.6, -0.0042, P = 3.5e-06, N = 7824) (0.37, -0.04, P = 0.42, N = 859)
rs7946613(A)/11:83789540 DLG2 (0.89, -0.0072, P = 2.1e-05, N = 7824) (0.9, 0.0014, P = 0.99, N = 859)
rs1871053(A)/11:88476191* GRM5 (0.45, -0.0044, P = 7.7e-07, N = 7824) (0.82, 0.074, P = 0.23, N = 859)
rs1349704(A)/11:96777666* intergenic (0.46, 0.0044, P = 8.3e-07, N = 7824) (0.58, -0.022, P = 0.65, N = 859)
rs12278762(T)/11:98781993 intergenic (0.52, 0.0043, P = 1.6e-06, N = 7824) (0.49, -0.073, P = 0.13, N = 859)
rs10750415(T)/11:99750593* CNTN5 (0.4, 0.0042, P = 2.8e-06, N = 7824) (0.4, 0.0026, P = 0.96, N = 859)
rs1861809(A)/12:110245588 TRPV4 (0.49, -0.0039, P = 1.3e-05, N = 7824) (0.23, 0.024, P = 0.68, N = 859)
rs10845331(C)/12:11474657 intergenic (0.59, -0.0038, P = 2.1e-05, N = 7824) (0.92, 0.051, P = 0.54, N = 859)
rs10846667(T)/12:124884424 NCOR2 (0.49, 0.0045, P = 1.7e-06, N = 7824) (0.11, 0.087, P = 0.25, N = 859)
rs3751181(A)/12:125626535* AACS (0.61, 0.0041, P = 5.2e-06, N = 7824) (0.51, 0.07, P = 0.13, N = 859)
rs871818(A)/12:130700729 RP11-143E21.1 (0.65, -0.0038, P = 3.5e-05, N = 7824) (0.75, 0.031, P = 0.59, N = 859)
rs4418881(A)/12:133058066 intergenic (0.65, 0.004, P = 2.5e-05, N = 7824) (0.43, -0.039, P = 0.44, N = 859)
rs725124(T)/12:23853069* SOX5 (0.64, -0.0038, P = 2.7e-05, N = 7824) (0.44, -0.034, P = 0.48, N = 859)
rs7965657(A)/12:27786415 PPFIBP1 (0.63, 0.0037, P = 4.8e-05, N = 7824) (0.76, -0.038, P = 0.52, N = 859)
rs11062520(T)/12:3241104 TSPAN9 (0.15, -0.0067, P = 3.8e-05, N = 7824) (0.079, 0.016, P = 0.86, N = 859)
rs7137875(A)/12:3697839* PRMT8 (0.62, 0.0038, P = 2.4e-05, N = 7824) (0.62, -0.014, P = 0.78, N = 859)
rs10881004(T)/12:47236571* intergenic (0.48, 0.0041, P = 3.4e-06, N = 7824) (0.89, -0.031, P = 0.69, N = 859)
rs17739600(T)/12:53210145 KRT4 (0.48, 0.0038, P = 2.6e-05, N = 7824) (0.24, -0.065, P = 0.23, N = 859)
rs12818321(T)/12:62120103* FAM19A2 (0.099, -0.0075, P = 1.4e-05, N = 7824) (0.038, -0.2, P = 0.1, N = 859)
rs10784496(A)/12:66160971 RPSAP52 (0.54, 0.0045, P = 5.1e-07, N = 7824) (0.23, -0.028, P = 0.63, N = 859)
rs17114354(A)/12:75291946* intergenic (0.99, 0.025, P = 3.5e-06, N = 7824) (0.88, -0.074, P = 0.31, N = 859)
rs9517869(T)/13:100398242 CLYBL (0.37, -0.0046, P = 3.5e-07, N = 7824) (0.15, 0.078, P = 0.26, N = 859)
rs1015795(A)/13:103225700 intergenic (0.51, 0.0043, P = 2.3e-06, N = 7824) (0.18, 0.11, P = 0.09, N = 859)
rs2391128(T)/13:105219349 intergenic (0.48, -0.0045, P = 4.7e-07, N = 7824) (0.14, -0.021, P = 0.76, N = 859)
rs2181766(A)/13:109057109 intergenic (0.35, 0.0037, P = 4e-05, N = 7824) (0.36, 0.077, P = 0.12, N = 859)
rs9511152(A)/13:19596767 PHF2P2 (0.56, -0.005, P = 3e-08, N = 7824) (0.71, -0.087, P = 0.11, N = 859)
rs8000457(T)/13:22871975* intergenic (0.97, 0.03, P = 4.7e-05, N = 7824) (0.85, -0.023, P = 0.73, N = 859)
rs1330918(A)/13:23373129 RPL7AP73 (0.61, 0.0042, P = 2.2e-06, N = 7824) (0.76, -0.012, P = 0.83, N = 859)
rs736081(T)/13:24659726 SPATA13 (0.45, 0.0039, P = 1.7e-05, N = 7824) (0.66, -0.062, P = 0.23, N = 859)
rs1220605(A)/13:24789809 SPATA13 (0.63, -0.0046, P = 9.3e-07, N = 7824) (0.68, 0.016, P = 0.76, N = 859)
rs9579653(T)/13:31344712 intergenic (0.84, 0.0064, P = 3.9e-05, N = 7824) (0.85, -0.028, P = 0.67, N = 859)
rs9541214(T)/13:35112824* RP11-16D22.2 (0.65, -0.0042, P = 3.8e-06, N = 7824) (0.83, 0.049, P = 0.44, N = 859)
rs9315440(A)/13:37293989 intergenic (0.58, 0.0048, P = 6.7e-08, N = 7824) (0.51, -0.016, P = 0.73, N = 859)
rs7318017(T)/13:52410120 intergenic (0.73, -0.0065, P = 1.3e-05, N = 7824) (0.46, 0.0046, P = 0.92, N = 859)
rs9543391(T)/13:74115140 LINC00393 (0.4, 0.0041, P = 6.4e-06, N = 7824) (0.17, 0.035, P = 0.59, N = 859)
rs1948293(A)/13:82401892 intergenic (0.4, -0.0039, P = 1.2e-05, N = 7824) (0.41, 0.027, P = 0.59, N = 859)
rs982568(T)/13:83438876 intergenic (0.43, 0.0037, P = 3.1e-05, N = 7824) (0.37, 0.0052, P = 0.92, N = 859)
rs9556349(A)/13:87690351 intergenic (0.095, 0.0075, P = 1.3e-05, N = 7824) (0.029, 0.12, P = 0.39, N = 859)
rs1335494(A)/13:89060622* intergenic (0.62, -0.0038, P = 2.9e-05, N = 7824) (0.37, -0.013, P = 0.8, N = 859)
rs9523030(T)/13:91262300 intergenic (0.63, 0.0043, P = 5.6e-06, N = 7824) (0.41, 0.0097, P = 0.84, N = 859)
rs885883(T)/14:107274052 IGHVII-78-1 (0.6, -0.0039, P = 1.3e-05, N = 7824) (0.93, 0.0045, P = 0.96, N = 859)
rs12891553(T)/14:20692188 OR11H6 (0.52, -0.0043, P = 2.4e-06, N = 7824) (0.48, -0.013, P = 0.78, N = 859)
rs718433(A)/14:22235890 TRAV6 (0.61, -0.0039, P = 1.5e-05, N = 7824) (0.66, 0.038, P = 0.45, N = 859)
rs8021242(T)/14:22398968* intergenic (0.59, 0.0049, P = 5.2e-08, N = 7824) (0.79, -0.038, P = 0.51, N = 859)
rs1241503(A)/14:25612502 intergenic (0.43, 0.0039, P = 1.7e-05, N = 7824) (0.62, -0.044, P = 0.35, N = 859)
rs3742929(T)/14:33165182 AKAP6 (0.51, -0.0044, P = 1e-06, N = 7824) (0.8, 0.043, P = 0.47, N = 859)
rs10483460(T)/14:36525290* RP11-116N8.1 (0.96, 0.014, P = 1.5e-05, N = 7824) (0.8, -0.028, P = 0.64, N = 859)
rs428185(T)/14:48321936 intergenic (0.59, -0.0045, P = 6.3e-07, N = 7824) (0.32, -0.0099, P = 0.85, N = 859)
rs4479142(T)/14:51530897 TRIM9 (0.6, -0.0037, P = 4.8e-05, N = 7824) (0.67, -0.053, P = 0.29, N = 859)
rs1254598(A)/14:52781195 PTGER2 (0.8, 0.15, P = 3.8e-06, N = 1959) (0.39, -0.022, P = 0.66, N = 859)
rs1254336(T)/14:60918777 C14orf39 (0.065, -0.29, P = 6.6e-06, N = 1959) (0.28, -0.023, P = 0.66, N = 859)
rs8006663(A)/14:69171003* RAD51B (0.46, -0.0046, P = 3e-07, N = 7824) (0.36, 0.12, P = 0.016, N = 859)
rs4899797(T)/14:82360895* RP11-666E17.1 (0.56, -0.0037, P = 3.1e-05, N = 7824) (0.26, -0.02, P = 0.71, N = 859)
rs12893435(A)/14:83311362* intergenic (0.38, 0.0038, P = 2.7e-05, N = 7824) (0.56, 0.025, P = 0.6, N = 859)
rs10151458(A)/14:89876847 FOXN3 (0.13, 0.007, P = 3.3e-05, N = 7824) (0.45, 0.031, P = 0.53, N = 859)
rs2230532(T)/14:97321689* VRK1 (0.35, 0.005, P = 5.7e-07, N = 7824) (0.18, -0.0087, P = 0.89, N = 859)
rs17744500(T)/15:101599246* LRRK1 (0.46, -0.0041, P = 4.2e-06, N = 7824) (0.52, 0.14, P = 0.0069, N = 859)
rs2444964(A)/15:33433259 FMN1 (0.41, -0.0038, P = 1.9e-05, N = 7824) (0.29, 0.0053, P = 0.92, N = 859)
rs837127(T)/15:37244186 MEIS2 (0.43, -0.0038, P = 2.3e-05, N = 7824) (0.56, 0.1, P = 0.039, N = 859)
rs692155(A)/15:41407061* INO80 (0.51, 0.0038, P = 2.6e-05, N = 7824) (0.21, 0.027, P = 0.65, N = 859)
rs645953(A)/15:42394368 intergenic (0.45, 0.0038, P = 2.6e-05, N = 7824) (0.36, 0.037, P = 0.47, N = 859)
rs682359(T)/15:42426833* intergenic (0.58, 0.0044, P = 6.5e-07, N = 7824) (0.86, 0.066, P = 0.34, N = 859)
rs8043246(C)/15:55330699* intergenic (0.16, -0.0071, P = 1.6e-05, N = 7824) (0.13, 0.16, P = 0.025, N = 859)
rs12595508(T)/15:61870977 RP11-507B12.2 (0.45, 0.0038, P = 1.8e-05, N = 7824) (0.86, 0.029, P = 0.69, N = 859)
rs6494862(A)/15:70671669 intergenic (0.53, 0.0039, P = 1.5e-05, N = 7824) (0.61, 0.048, P = 0.33, N = 859)
rs10519267(A)/15:79924714 intergenic (0.029, 0.014, P = 2.5e-05, N = 7824) (0.021, 0.21, P = 0.21, N = 859)
rs1347648(A)/15:80558947 LINC00927 (0.44, -0.0037, P = 2.9e-05, N = 7824) (0.25, 0.11, P = 0.044, N = 859)
rs4843144(A)/15:83584065 HOMER2 (0.47, -0.0037, P = 4.8e-05, N = 7824) (0.83, 0.058, P = 0.36, N = 859)
rs1455775(T)/15:93015278* C15orf32 (0.44, -0.0039, P = 1.2e-05, N = 7824) (0.37, 0.0075, P = 0.88, N = 859)
rs830727(A)/16:12309785* SNX29 (0.43, -0.0038, P = 2.6e-05, N = 7824) (0.84, -0.076, P = 0.25, N = 859)
rs928963(A)/16:13616231 U91319.1 (0.4, 0.0042, P = 3.6e-06, N = 7824) (0.38, 0.15, P = 0.0027, N = 859)
rs7206838(A)/16:17356812* XYLT1 (0.57, 0.0037, P = 4e-05, N = 7824) (0.93, -0.1, P = 0.29, N = 859)
rs7189972(A)/16:19490008 TMC5 (0.043, -0.011, P = 3e-05, N = 7824) (0.18, -0.098, P = 0.12, N = 859)
rs2520117(A)/16:26576299* intergenic (0.45, 0.0045, P = 5.1e-07, N = 7824) (0.55, 0.016, P = 0.74, N = 859)
rs10521275(T)/16:52907039 intergenic (0.47, -0.0042, P = 3.6e-06, N = 7824) (0.49, 0.041, P = 0.39, N = 859)
rs8056052(C)/16:52912738 intergenic (0.6, 0.0042, P = 3.3e-06, N = 7824) (0.57, -0.04, P = 0.42, N = 859)
rs2111118(T)/16:54049153 FTO (0.62, 0.0051, P = 1.2e-08, N = 7824) (0.19, 0.064, P = 0.29, N = 859)
rs8046426(A)/16:7232302 RBFOX1 (0.37, 0.004, P = 8.1e-06, N = 7824) (0.32, -0.018, P = 0.72, N = 859)
rs12919838(C)/16:7533330 RBFOX1 (0.51, 0.0039, P = 1.5e-05, N = 7824) (0.89, -0.095, P = 0.23, N = 859)
rs62059845(G)/16:75430713 CFDP1 (0.34, 0.08, P = 9.4e-06, N = 1959) (0.35, -0.013, P = 0.79, N = 859)
rs6500981(T)/16:7593575* RBFOX1 (0.9, -0.25, P = 3.5e-06, N = 1959) (0.81, 0.032, P = 0.61, N = 859)
rs881562(T)/16:7760884 RBFOX1 (0.5, 0.0044, P = 1.5e-06, N = 7824) (0.74, 0.039, P = 0.5, N = 859)
rs2966079(T)/16:81511806 CMIP (0.54, -0.0042, P = 2.5e-06, N = 7824) (0.67, -0.042, P = 0.41, N = 859)
rs4783276(T)/16:82826944* CDH13 (0.51, 0.0037, P = 4.6e-05, N = 7824) (0.29, 0.019, P = 0.73, N = 859)
rs4783024(T)/16:84624525 COTL1 (0.49, -0.004, P = 2.8e-05, N = 7824) (0.59, -0.026, P = 0.6, N = 859)
rs7198470(T)/16:87061782 intergenic (0.61, 0.004, P = 9e-06, N = 7824) (0.68, 0.046, P = 0.37, N = 859)
rs17698249(A)/16:87319938 RP11-178L8.5 (0.57, -0.0041, P = 5.5e-06, N = 7824) (0.91, -0.071, P = 0.38, N = 859)
rs205021(T)/17:11320392 SHISA6 (0.89, 0.0074, P = 1.5e-05, N = 7824) (0.73, -0.047, P = 0.39, N = 859)
rs11078180(A)/17:13622654* intergenic (0.52, -0.0037, P = 4.7e-05, N = 7824) (0.4, 0.0079, P = 0.87, N = 859)
rs2078340(T)/17:13807276 COX10-AS1 (0.53, 0.0039, P = 2.7e-05, N = 7824) (0.5, -0.029, P = 0.56, N = 859)
rs7217154(T)/17:14168109* intergenic (0.44, -0.0037, P = 4.1e-05, N = 7824) (0.67, 0.033, P = 0.52, N = 859)
rs2386434(G)/17:20470679 COTL1P2 (0.43, 0.18, P = 4.4e-06, N = 1959) (0.52, 0.11, P = 0.026, N = 859)
rs9635769(T)/17:33288363 CCT6B (0.57, 0.0037, P = 4.9e-05, N = 7824) (0.28, 0.081, P = 0.13, N = 859)
rs4790581(T)/17:4066657 ANKFY1 (0.4, -0.0037, P = 3.2e-05, N = 7824) (0.69, 0.0013, P = 0.98, N = 859)
rs17842784(C)/17:41440236 intergenic (0.95, 0.011, P = 1.7e-05, N = 7824) (0.56, 0.012, P = 0.81, N = 859)
rs1825734(T)/17:50332557 intergenic (0.85, 0.0069, P = 4.2e-05, N = 7824) (0.76, -0.037, P = 0.52, N = 859)
rs11654913(A)/17:52369879 intergenic (0.56, -0.004, P = 6.9e-06, N = 7824) (0.5, 0.039, P = 0.43, N = 859)
rs8073123(A)/17:5773900* WSCD1 (0.49, 0.0038, P = 3e-05, N = 7824) (0.37, -0.11, P = 0.023, N = 859)
rs9947364(A)/18:25425442 intergenic (0.64, -0.004, P = 1.2e-05, N = 7824) (0.49, 0.0031, P = 0.95, N = 859)
rs11564346(T)/18:25826962 intergenic (0.51, 0.0037, P = 2.9e-05, N = 7824) (0.5, -0.083, P = 0.092, N = 859)
rs17801274(A)/18:28858921 intergenic (0.044, 0.011, P = 1.5e-05, N = 7824) (0.13, -0.069, P = 0.33, N = 859)
rs1037419(T)/18:31557113 NOL4 (0.58, -0.0039, P = 1.9e-05, N = 7824) (0.73, -0.013, P = 0.81, N = 859)
rs9948912(A)/18:34853641* CELF4 (0.36, 0.004, P = 9.6e-06, N = 7824) (0.29, 0.15, P = 0.0035, N = 859)
rs7230740(A)/18:3636288* DLGAP1 (0.67, 0.0044, P = 1.6e-06, N = 7824) (0.72, 0.12, P = 0.028, N = 859)
rs540343(A)/18:41007699 intergenic (0.62, -0.0037, P = 4.8e-05, N = 7824) (0.83, -0.037, P = 0.56, N = 859)
rs9989564(A)/18:41305359 intergenic (0.51, -0.0042, P = 3.1e-06, N = 7824) (0.34, 0.019, P = 0.7, N = 859)
rs4890592(A)/18:43370963 RP11-618K16.4 (0.63, -0.0038, P = 3.2e-05, N = 7824) (0.77, -0.057, P = 0.32, N = 859)
rs1623892(A)/18:47456441* MYO5B (0.44, 0.0038, P = 2.1e-05, N = 7824) (0.58, -0.017, P = 0.73, N = 859)
rs993927(T)/18:50101294 DCC (0.38, 0.0042, P = 2.6e-06, N = 7824) (0.13, 0.027, P = 0.71, N = 859)
rs9959836(A)/18:50225499* DCC (0.098, -0.0069, P = 4.3e-05, N = 7824) (0.26, 0.043, P = 0.44, N = 859)
rs9950125(A)/18:50548544 DCC (0.45, -0.004, P = 7.7e-06, N = 7824) (0.43, -0.06, P = 0.23, N = 859)
rs2658761(T)/18:54059039* intergenic (0.43, -0.0048, P = 6.7e-08, N = 7824) (0.44, 0.028, P = 0.57, N = 859)
rs8088963(A)/18:59047314* CDH20 (0.64, 0.0044, P = 8.3e-07, N = 7824) (0.63, 0.0095, P = 0.85, N = 859)
rs11152350(A)/18:60240352 ZCCHC2 (0.47, -0.0038, P = 1.9e-05, N = 7824) (0.47, 0.029, P = 0.54, N = 859)
rs860916(A)/18:60665539 intergenic (0.42, -0.0047, P = 1.5e-07, N = 7824) (0.9, 0.1, P = 0.2, N = 859)
rs7505177(T)/18:75220892 RP11-176N18.2 (0.41, -0.0043, P = 5.9e-06, N = 7824) (0.75, -0.00022, P = 1, N = 859)
rs1249489(A)/18:8711942 RP11-674N23.1 (0.37, 0.0042, P = 3.7e-06, N = 7824) (0.68, -0.024, P = 0.65, N = 859)
rs8110890(T)/19:19848485* ZNF14 (0.47, 0.0045, P = 7.5e-07, N = 7824) (0.64, -0.091, P = 0.06, N = 859)
rs7246393(A)/19:23388805 RP11-15H20.2 (0.52, 0.0043, P = 1.6e-06, N = 7824) (0.81, -0.035, P = 0.56, N = 859)
rs1834970(A)/19:28615716 CTD-2043I16.1 (0.43, 0.0037, P = 4e-05, N = 7824) (0.27, 0.055, P = 0.31, N = 859)
rs7251154(A)/19:42305941 CEACAM3 (0.37, -0.0037, P = 4.5e-05, N = 7824) (0.63, 0.051, P = 0.31, N = 859)
rs6509523(T)/19:51767205 SIGLECL1 (0.5, 0.0043, P = 2.5e-06, N = 7824) (0.79, -0.022, P = 0.71, N = 859)
rs875283(A)/19:51767485 SIGLECL1 (0.49, -0.0043, P = 2.3e-06, N = 7824) (0.2, 0.0046, P = 0.94, N = 859)
rs10406056(T)/19:9536418* ZNF266 (0.58, 0.0039, P = 1.6e-05, N = 7824) (0.66, 0.048, P = 0.35, N = 859)
rs13001325(T)/2:102939036 IL1RL1 (0.38, -0.004, P = 7.4e-06, N = 7824) (0.15, 0.033, P = 0.64, N = 859)
rs6729061(A)/2:106182953* intergenic (0.37, 0.004, P = 1.1e-05, N = 7824) (0.6, 0.061, P = 0.22, N = 859)
rs4849291(C)/2:114594099* AC104653.1 (0.61, 0.0041, P = 5.9e-06, N = 7824) (0.12, -0.041, P = 0.58, N = 859)
rs7584842(T)/2:11756260* GREB1 (0.54, -0.005, P = 4.2e-08, N = 7824) (0.43, 0.0034, P = 0.94, N = 859)
rs2580344(T)/2:122047352* TFCP2L1 (0.62, 0.0044, P = 8e-07, N = 7824) (0.53, -0.042, P = 0.38, N = 859)
rs4063769(T)/2:132731387* AJ239322.1 (0.53, -0.0043, P = 1.3e-06, N = 7824) (0.83, 0.02, P = 0.76, N = 859)
rs1316293(A)/2:156659919* intergenic (0.6, -0.0039, P = 1.7e-05, N = 7824) (0.62, 0.036, P = 0.47, N = 859)
rs1534259(T)/2:156911378* intergenic (0.5, 0.0038, P = 2.8e-05, N = 7824) (0.64, 0.033, P = 0.51, N = 859)
rs16843561(T)/2:159875840 TANC1 (0.1, -0.0073, P = 1.7e-05, N = 7824) (0.084, 0.21, P = 0.019, N = 859)
rs4972588(A)/2:174444590 AC013410.1 (0.51, -0.0046, P = 3.7e-07, N = 7824) (0.27, 0.016, P = 0.78, N = 859)
rs577687(A)/2:174451691* intergenic (0.61, -0.0043, P = 2.3e-06, N = 7824) (0.66, -0.013, P = 0.8, N = 859)
rs7570357(A)/2:181079460 intergenic (0.45, -0.0037, P = 4.5e-05, N = 7824) (0.25, 0.033, P = 0.55, N = 859)
rs288354(A)/2:183679421* intergenic (0.59, -0.004, P = 1.1e-05, N = 7824) (0.74, -0.056, P = 0.32, N = 859)
rs10931041(T)/2:183685562 intergenic (0.58, -0.0042, P = 3.4e-06, N = 7824) (0.47, 0.009, P = 0.85, N = 859)
rs7421372(A)/2:1855717* MYT1L (0.48, 0.0037, P = 3.9e-05, N = 7824) (0.7, -0.07, P = 0.19, N = 859)
rs7597815(A)/2:188436536* intergenic (0.58, -0.0038, P = 2.7e-05, N = 7824) (0.8, -0.088, P = 0.13, N = 859)
rs992005(C)/2:199504765 AC019330.1 (0.58, -0.0039, P = 1.5e-05, N = 7824) (0.81, -0.0098, P = 0.87, N = 859)
rs295142(A)/2:201211716 SPATS2L (0.59, -0.0048, P = 1.5e-07, N = 7824) (0.37, -0.03, P = 0.55, N = 859)
rs2349729(A)/2:202521624 MPP4 (0.51, -0.0041, P = 6.4e-06, N = 7824) (0.71, -0.03, P = 0.58, N = 859)
rs6730726(A)/2:205154353 intergenic (0.53, -0.004, P = 7.2e-06, N = 7824) (0.23, 0.034, P = 0.55, N = 859)
rs1453165(A)/2:207813972 CPO (0.46, 0.0038, P = 2.6e-05, N = 7824) (0.63, 0.072, P = 0.16, N = 859)
rs2854717(A)/2:208996761 CRYGC (0.65, -0.0037, P = 4.9e-05, N = 7824) (0.74, 0.064, P = 0.24, N = 859)
rs2286963(T)/2:211060050* ACADL (0.65, 0.0039, P = 1.1e-05, N = 7824) (0.87, 0.0011, P = 0.99, N = 859)
rs6435723(T)/2:213580723* AC079610.1 (0.9, -0.008, P = 6.9e-06, N = 7824) (0.91, 0.067, P = 0.42, N = 859)
rs207938(A)/2:217041881 XRCC5 (0.4, -0.0043, P = 1.3e-06, N = 7824) (0.2, -0.094, P = 0.12, N = 859)
rs1835335(T)/2:218636444 intergenic (0.48, -0.0038, P = 1.8e-05, N = 7824) (0.59, 0.046, P = 0.34, N = 859)
rs6735596(A)/2:228093883* COL4A3 (0.63, -0.0038, P = 3.4e-05, N = 7824) (0.7, -0.001, P = 0.98, N = 859)
rs12468084(T)/2:230596352* intergenic (0.54, -0.0044, P = 1.2e-06, N = 7824) (0.25, -0.034, P = 0.53, N = 859)
rs11678851(T)/2:233825947 NGEF (0.41, 0.0041, P = 5.9e-06, N = 7824) (0.27, -0.022, P = 0.69, N = 859)
rs4663553(A)/2:236100852 intergenic (0.89, 0.0073, P = 1.5e-05, N = 7824) (0.39, 0.012, P = 0.8, N = 859)
rs6736036(T)/2:239834334 intergenic (0.1, -0.22, P = 2.6e-06, N = 1959) (0.26, -0.02, P = 0.71, N = 859)
rs719564(A)/2:242101368 PPP1R7 (0.61, 0.0044, P = 1.3e-06, N = 7824) (0.88, 0.077, P = 0.29, N = 859)
rs6746911(A)/2:2587538* intergenic (0.57, -0.0037, P = 3.7e-05, N = 7824) (0.48, -0.0048, P = 0.92, N = 859)
rs2304681(A)/2:27315252* KHK (0.37, -0.0037, P = 3.7e-05, N = 7824) (0.31, 0.042, P = 0.43, N = 859)
rs1260326(T)/2:27730940* GCKR (0.4, 0.0042, P = 2.7e-06, N = 7824) (0.14, -0.019, P = 0.79, N = 859)
rs829590(T)/2:30623062 intergenic (0.46, -0.0038, P = 1.8e-05, N = 7824) (0.31, -0.021, P = 0.69, N = 859)
rs7594598(A)/2:31026603 CAPN13 (0.43, 0.004, P = 9.5e-06, N = 7824) (0.21, -0.025, P = 0.67, N = 859)
rs7582140(T)/2:3326203 TSSC1 (0.64, 0.0038, P = 3e-05, N = 7824) (0.39, -0.11, P = 0.022, N = 859)
rs1448561(A)/2:33854344 intergenic (0.52, 0.0037, P = 4.1e-05, N = 7824) (0.64, -0.0088, P = 0.87, N = 859)
rs6747650(A)/2:3451507 TRAPPC12 (0.58, -0.0041, P = 4.4e-06, N = 7824) (0.78, 0.045, P = 0.43, N = 859)
rs6708411(T)/2:37718181* intergenic (0.52, -0.0038, P = 1.6e-05, N = 7824) (0.54, 0.023, P = 0.64, N = 859)
rs1371404(A)/2:43040577 intergenic (0.44, 0.0038, P = 2.5e-05, N = 7824) (0.61, 0.062, P = 0.21, N = 859)
rs3936042(T)/2:43107039* intergenic (0.39, 0.0038, P = 2.5e-05, N = 7824) (0.18, 0.045, P = 0.46, N = 859)
rs1530625(T)/2:46658067 TMEM247 (0.46, 0.0038, P = 2.3e-05, N = 7824) (0.42, -0.031, P = 0.53, N = 859)
rs17038105(A)/2:49266747 FSHR (0.98, -0.016, P = 2.2e-05, N = 7824) (0.7, 0.087, P = 0.096, N = 859)
rs4971590(A)/2:52528277* AC007682.1 (0.4, 0.0039, P = 1.6e-05, N = 7824) (0.62, 0.00046, P = 0.99, N = 859)
rs12329050(A)/2:55894428 PNPT1 (0.4, -0.0037, P = 4.6e-05, N = 7824) (0.62, 0.0072, P = 0.88, N = 859)
rs13008096(A)/2:62792689 RSL24D1P2 (0.4, -0.0042, P = 3.3e-06, N = 7824) (0.81, 0.0011, P = 0.99, N = 859)
rs6759991(T)/2:75696816 AC007099.2 (0.86, 0.0076, P = 2.5e-06, N = 7824) (0.59, -0.017, P = 0.72, N = 859)
rs11126537(T)/2:76744940* intergenic (0.55, 0.0036, P = 4.7e-05, N = 7824) (0.33, 0.012, P = 0.82, N = 859)
rs2861078(A)/2:77697995* LRRTM4 (0.54, 0.0038, P = 2.7e-05, N = 7824) (0.63, 0.038, P = 0.45, N = 859)
rs10171387(A)/2:80261406 CTNNA2 (0.91, 0.008, P = 5.1e-06, N = 7824) (0.98, 0.25, P = 0.16, N = 859)
rs3927971(T)/2:8776102 intergenic (0.52, 0.0042, P = 9e-06, N = 7824) (0.42, -0.018, P = 0.71, N = 859)
rs11691641(A)/2:98360443 ZAP70 (0.48, -0.0037, P = 4.1e-05, N = 7824) (0.39, -0.041, P = 0.41, N = 859)
rs6079133(A)/20:1419294 NSFL1C (0.43, 0.0038, P = 2.4e-05, N = 7824) (0.28, -0.044, P = 0.42, N = 859)
rs6074798(A)/20:14761710 MACROD2 (0.5, -0.0037, P = 3.3e-05, N = 7824) (0.22, 0.02, P = 0.73, N = 859)
rs6110544(T)/20:15166775 MACROD2 (0.44, 0.004, P = 7e-06, N = 7824) (0.2, 0.047, P = 0.43, N = 859)
rs2208167(A)/20:20239744 C20orf26 (0.53, 0.0037, P = 3.1e-05, N = 7824) (0.57, 0.0029, P = 0.95, N = 859)
rs6036180(A)/20:22679977 intergenic (0.58, -0.0037, P = 5e-05, N = 7824) (0.89, -0.1, P = 0.2, N = 859)
rs6075944(A)/20:22725941 intergenic (0.21, -0.0062, P = 4.3e-05, N = 7824) (0.22, -0.0025, P = 0.97, N = 859)
rs6130271(T)/20:41612425* PTPRT (0.54, -0.004, P = 7.4e-06, N = 7824) (0.51, -0.038, P = 0.43, N = 859)
rs7262469(A)/20:4184858 intergenic (0.53, 0.0039, P = 2.2e-05, N = 7824) (0.091, 0.048, P = 0.57, N = 859)
rs112259693(A)/20:42794090 JPH2 (0.072, 0.24, P = 5.4e-06, N = 1959) (0.016, -0.17, P = 0.37, N = 859)
rs2425672(A)/20:43526137 YWHAB (0.43, -0.0038, P = 2.6e-05, N = 7824) (0.3, 0.024, P = 0.65, N = 859)
rs459011(A)/20:44364020* intergenic (0.63, 0.0038, P = 3.7e-05, N = 7824) (0.34, 0.019, P = 0.72, N = 859)
rs6104350(A)/20:44423843* DNTTIP1 (0.65, 0.0037, P = 4.6e-05, N = 7824) (0.36, 0.035, P = 0.47, N = 859)
rs8183309(A)/20:49076893 intergenic (0.59, 0.0038, P = 2.7e-05, N = 7824) (0.75, -0.055, P = 0.32, N = 859)
rs4811174(T)/20:50048133 NFATC2 (0.47, -0.0037, P = 4.6e-05, N = 7824) (0.77, -0.045, P = 0.43, N = 859)
rs1276434(T)/20:55479307* intergenic (0.55, 0.0038, P = 2.3e-05, N = 7824) (0.63, -0.016, P = 0.75, N = 859)
rs1418942(A)/20:58164306* PHACTR3 (0.58, -0.004, P = 7.1e-06, N = 7824) (0.85, 0.02, P = 0.76, N = 859)
rs6101058(T)/20:59336158 intergenic (0.063, -0.0096, P = 3.4e-05, N = 7824) (0.14, -0.024, P = 0.72, N = 859)
rs1884639(T)/20:719854* intergenic (0.39, 0.0039, P = 1.7e-05, N = 7824) (0.5, -0.097, P = 0.047, N = 859)
rs6077611(T)/20:9893691 intergenic (0.48, -0.0041, P = 5.3e-06, N = 7824) (0.25, 0.024, P = 0.67, N = 859)
rs1663501(A)/21:28219307* ADAMTS1 (0.46, -0.0047, P = 2.4e-07, N = 7824) (0.57, 0.08, P = 0.098, N = 859)
rs1155158(C)/21:29039413 intergenic (0.5, 0.0037, P = 4.4e-05, N = 7824) (0.35, 0.047, P = 0.35, N = 859)
rs2834164(A)/21:34621948* IFNAR2 (0.5, -0.0045, P = 4.8e-07, N = 7824) (0.55, 0.068, P = 0.16, N = 859)
rs6517254(T)/21:36080290* CLIC6 (0.4, -0.0042, P = 3.1e-06, N = 7824) (0.63, 0.037, P = 0.46, N = 859)
rs460574(T)/21:39986245 ERG (0.43, 0.0038, P = 2.4e-05, N = 7824) (0.29, 0.12, P = 0.033, N = 859)
rs2836842(T)/21:40392537* intergenic (0.57, -0.0038, P = 2.2e-05, N = 7824) (0.44, 0.02, P = 0.68, N = 859)
rs1015993(T)/21:42005288* DSCAM (0.47, 0.0041, P = 7.3e-06, N = 7824) (0.59, 0.034, P = 0.49, N = 859)
rs6586235(A)/21:43174436 RIPK4 (0.46, 0.0043, P = 1.6e-06, N = 7824) (0.42, 0.12, P = 0.012, N = 859)
rs150795(A)/21:43462379* intergenic (0.56, 0.0039, P = 1.5e-05, N = 7824) (0.65, 0.0054, P = 0.91, N = 859)
rs234705(T)/21:44483772* CBS (0.35, 0.004, P = 1.2e-05, N = 7824) (0.24, 0.013, P = 0.81, N = 859)
rs9941787(A)/21:45116042* RRP1B (0.39, -0.0039, P = 2.6e-05, N = 7824) (0.23, 0.014, P = 0.81, N = 859)
rs2838569(C)/21:45898223* MTND5P1 (0.5, -0.0038, P = 2.6e-05, N = 7824) (0.79, -0.021, P = 0.73, N = 859)
rs4819811(A)/22:19609256 intergenic (0.37, 0.0038, P = 3e-05, N = 7824) (0.23, 0.06, P = 0.3, N = 859)
rs6001129(T)/22:22506340* LL22NC03-30E12.10 (0.13, -0.009, P = 6.8e-06, N = 7824) (0.41, -0.047, P = 0.34, N = 859)
rs5997110(T)/22:27036505 ISCA2P1 (0.52, -0.005, P = 5.7e-07, N = 7824) (0.42, -0.021, P = 0.66, N = 859)
rs1884134(A)/22:27831650 intergenic (0.63, 0.0039, P = 1.9e-05, N = 7824) (0.66, -0.093, P = 0.064, N = 859)
rs9613768(T)/22:29402832 ZNRF3 (0.41, 0.0038, P = 1.9e-05, N = 7824) (0.076, -0.15, P = 0.11, N = 859)
rs13056963(T)/22:33622667* LARGE (0.44, 0.0043, P = 5.6e-06, N = 7824) (0.27, -0.12, P = 0.02, N = 859)
rs9610322(A)/22:35980173 intergenic (0.52, -0.0043, P = 1.1e-06, N = 7824) (0.41, 0.064, P = 0.19, N = 859)
rs2144411(A)/22:47478839 TBC1D22A (0.38, -0.0037, P = 3.6e-05, N = 7824) (0.46, 0.08, P = 0.099, N = 859)
rs4824056(A)/22:49928073 C22orf34 (0.82, 0.011, P = 1.8e-05, N = 7824) (0.33, -0.02, P = 0.71, N = 859)
rs7621216(A)/3:112463310 RP11-572C15.5 (0.47, 0.0036, P = 4.8e-05, N = 7824) (0.74, -0.19, P = 3e-04, N = 859)
rs3772343(A)/3:1273716 CNTN6 (0.99, 0.028, P = 3.1e-06, N = 7824) (0.99, -0.25, P = 0.24, N = 859)
rs62284469(T)/3:151185595 intergenic (0.28, 0.13, P = 3.1e-06, N = 1959) (0.15, -0.056, P = 0.4, N = 859)
rs11719675(A)/3:168353685 EGFEM1P (0.4, -0.0041, P = 5.1e-06, N = 7824) (0.5, 0.074, P = 0.12, N = 859)
rs1798231(A)/3:169921441 intergenic (0.42, -0.0038, P = 3.2e-05, N = 7824) (0.35, -0.049, P = 0.32, N = 859)
rs16848052(A)/3:172247863* intergenic (0.016, -0.033, P = 2e-05, N = 7824) (0.11, 0.00058, P = 0.99, N = 859)
rs4129414(T)/3:178385917 KCNMB2 (0.6, -0.0039, P = 1.2e-05, N = 7824) (0.82, -0.016, P = 0.8, N = 859)
rs11720862(T)/3:1838974* intergenic (0.6, -0.0046, P = 3.6e-07, N = 7824) (0.53, -0.015, P = 0.75, N = 859)
rs12497219(T)/3:1861001 intergenic (0.55, -0.0045, P = 5.3e-07, N = 7824) (0.72, -0.00026, P = 1, N = 859)
rs4686980(T)/3:188302851 LPP (0.36, 0.005, P = 5.7e-07, N = 7824) (0.41, 0.016, P = 0.74, N = 859)
rs1013667(A)/3:191089680 CCDC50 (0.61, -0.0041, P = 5.7e-06, N = 7824) (0.31, -0.025, P = 0.63, N = 859)
rs972459(T)/3:191855497 FGF12 (0.58, 0.005, P = 2e-08, N = 7824) (0.91, 0.022, P = 0.79, N = 859)
rs9877345(A)/3:197808975 ANKRD18DP (0.56, -0.0039, P = 1.5e-05, N = 7824) (0.59, 0.0041, P = 0.93, N = 859)
rs1356792(A)/3:20378153* intergenic (0.58, 0.0037, P = 3.8e-05, N = 7824) (0.76, 0.017, P = 0.77, N = 859)
rs4306882(T)/3:21062584* intergenic (0.62, -0.0057, P = 2.5e-10, N = 7824) (0.65, -0.025, P = 0.62, N = 859)
rs116683205(A)/3:22515451 intergenic (0.2, 0.23, P = 6.7e-06, N = 1959) (0.31, -0.033, P = 0.52, N = 859)
rs4356783(C)/3:25004834 AC133680.1 (0.59, -0.0041, P = 6.7e-06, N = 7824) (0.54, -0.034, P = 0.49, N = 859)
rs9842801(C)/3:25047228* AC133680.1 (0.51, 0.0044, P = 7.9e-07, N = 7824) (0.29, 0.017, P = 0.74, N = 859)
rs6786397(A)/3:31721774 OSBPL10 (0.58, -0.0038, P = 2.5e-05, N = 7824) (0.18, 0.011, P = 0.86, N = 859)
rs430727(T)/3:41128564 intergenic (0.46, 0.0041, P = 5.1e-06, N = 7824) (0.36, 0.055, P = 0.29, N = 859)
rs4973952(C)/3:41525357* ULK4 (0.41, -0.0041, P = 6.5e-06, N = 7824) (0.48, 0.019, P = 0.69, N = 859)
rs6807794(T)/3:446221 CHL1 (0.033, 0.39, P = 5.5e-06, N = 1959) (0.32, 0.031, P = 0.55, N = 859)
rs7638383(A)/3:4994341 BHLHE40-AS1 (0.4, 0.0047, P = 1.6e-07, N = 7824) (0.36, -0.083, P = 0.1, N = 859)
rs341973(T)/3:5268162 intergenic (0.49, 0.005, P = 5.7e-07, N = 7824) (0.66, 0.0074, P = 0.88, N = 859)
rs3773729(T)/3:53204845* PRKCD (0.63, 0.004, P = 8.6e-06, N = 7824) (0.3, 0.025, P = 0.64, N = 859)
rs6793158(A)/3:55235233* intergenic (0.47, -0.0039, P = 1.1e-05, N = 7824) (0.27, -0.021, P = 0.68, N = 859)
rs1403699(T)/3:63415109 SYNPR (0.47, -0.0038, P = 1.7e-05, N = 7824) (0.76, 0.073, P = 0.19, N = 859)
rs11706832(A)/3:66502981 LRIG1 (0.52, -0.0038, P = 2e-05, N = 7824) (0.86, 0.021, P = 0.76, N = 859)
rs3864070(T)/3:7691250* GRM7 (0.61, -0.0037, P = 4.1e-05, N = 7824) (0.57, 0.043, P = 0.38, N = 859)
rs4684599(T)/3:8626572 AC034187.2 (0.63, -0.0042, P = 2.9e-06, N = 7824) (0.73, 0.03, P = 0.57, N = 859)
rs7675057(T)/4:104007996 BDH2 (0.81, -0.0064, P = 4.8e-05, N = 7824) (0.68, 0.027, P = 0.6, N = 859)
rs958962(A)/4:109974200 COL25A1 (0.64, 0.0038, P = 2.6e-05, N = 7824) (0.3, 0.049, P = 0.35, N = 859)
rs4989308(A)/4:115289204 intergenic (0.37, -0.0045, P = 8.4e-07, N = 7824) (0.55, 0.039, P = 0.41, N = 859)
rs11729831(T)/4:11735115 RP11-281P23.2 (0.61, 0.004, P = 8.6e-06, N = 7824) (0.39, 0.032, P = 0.51, N = 859)
rs7663985(T)/4:12105392 intergenic (0.38, 0.0038, P = 3e-05, N = 7824) (0.41, 0.032, P = 0.51, N = 859)
rs6858525(A)/4:127425634 intergenic (0.15, 0.014, P = 1.4e-05, N = 7824) (0.13, -0.0025, P = 0.97, N = 859)
rs6534667(C)/4:129066488 LARP1B (0.42, -0.0043, P = 1.5e-06, N = 7824) (0.16, 0.13, P = 0.046, N = 859)
rs4975249(A)/4:129676063 snoU13 (0.62, 0.0039, P = 1.6e-05, N = 7824) (0.32, 0.028, P = 0.6, N = 859)
rs17034862(C)/4:135178352 RP11-400D2.2 (0.52, -0.004, P = 6.9e-06, N = 7824) (0.45, 0.097, P = 0.052, N = 859)
rs6537156(T)/4:139067202* SLC7A11-AS1 (0.45, 0.004, P = 8.1e-06, N = 7824) (0.36, 0.09, P = 0.082, N = 859)
rs1995960(A)/4:142916958 intergenic (0.59, -0.0047, P = 1.6e-07, N = 7824) (0.14, 0.022, P = 0.75, N = 859)
rs1878284(A)/4:153919578 intergenic (0.39, 0.0037, P = 4e-05, N = 7824) (0.69, -0.00083, P = 0.99, N = 859)
rs4691944(T)/4:156753174* ASIC5 (0.9, 0.011, P = 2e-10, N = 7824) (0.97, -0.0081, P = 0.96, N = 859)
rs67803018(T)/4:156769319 ASIC5 (0.072, -0.33, P = 1.3e-06, N = 1959) (0.024, 0.2, P = 0.21, N = 859)
rs13122250(T)/4:156808288* TDO2 (0.55, 0.0062, P = 8.9e-12, N = 7824) (0.2, 0.024, P = 0.69, N = 859)
rs6826247(T)/4:161635568 intergenic (0.51, 0.0048, P = 8.8e-08, N = 7824) (0.36, -0.11, P = 0.025, N = 859)
rs34686132(A)/4:169547663 PALLD (0.54, 0.19, P = 2e-06, N = 1959) (0.25, -0.023, P = 0.68, N = 859)
rs1508513(C)/4:172003439 intergenic (0.64, 0.0042, P = 2.4e-06, N = 7824) (0.36, 0.049, P = 0.34, N = 859)
rs9884164(A)/4:182662819 intergenic (0.098, 0.0077, P = 1.1e-05, N = 7824) (0.13, -0.066, P = 0.36, N = 859)
rs7687160(A)/4:183170004 TENM3 (0.44, 0.0039, P = 2.2e-05, N = 7824) (0.65, 0.025, P = 0.62, N = 859)
rs6841061(A)/4:185999543* RP11-386B13.3 (0.64, 0.0038, P = 2.3e-05, N = 7824) (0.68, 0.073, P = 0.16, N = 859)
rs1519309(T)/4:187015089* intergenic (0.65, -0.0044, P = 1.2e-06, N = 7824) (0.4, -0.00082, P = 0.99, N = 859)
rs12650762(A)/4:188071662 intergenic (0.5, 0.0038, P = 2.1e-05, N = 7824) (0.81, -0.056, P = 0.37, N = 859)
rs937382(T)/4:189971532 intergenic (0.45, -0.0046, P = 2.3e-07, N = 7824) (0.54, 0.053, P = 0.28, N = 859)
rs6819555(A)/4:27342170 intergenic (0.59, -0.0043, P = 3.7e-06, N = 7824) (0.92, -0.054, P = 0.53, N = 859)
rs4355437(A)/4:32728207 intergenic (0.61, 0.0036, P = 4.6e-05, N = 7824) (0.61, -0.047, P = 0.33, N = 859)
rs16990420(T)/4:34855432 intergenic (0.63, 0.0039, P = 1.5e-05, N = 7824) (0.21, -0.054, P = 0.38, N = 859)
rs10517336(T)/4:34920784* intergenic (0.36, 0.0039, P = 1.5e-05, N = 7824) (0.41, -0.054, P = 0.28, N = 859)
rs4695289(A)/4:43965710 intergenic (0.35, -0.0045, P = 7.9e-07, N = 7824) (0.42, 0.082, P = 0.1, N = 859)
rs10007704(T)/4:44276751* KCTD8 (0.64, -0.0044, P = 1.2e-06, N = 7824) (0.59, 0.033, P = 0.5, N = 859)
rs4695138(A)/4:45956180 intergenic (0.54, 0.0052, P = 8e-09, N = 7824) (0.75, 0.003, P = 0.96, N = 859)
rs1512142(A)/4:47004305 GABRB1 (0.44, -0.0038, P = 2.6e-05, N = 7824) (0.45, 0.024, P = 0.62, N = 859)
rs16836288(A)/4:4807203 intergenic (0.044, 0.013, P = 5.6e-06, N = 7824) (0.34, 0.04, P = 0.42, N = 859)
rs6554068(A)/4:54032319 SCFD2 (0.62, 0.0038, P = 2.2e-05, N = 7824) (0.68, 0.052, P = 0.31, N = 859)
rs11729908(T)/4:55221410* RP11-231C18.1 (0.5, 0.0039, P = 1.6e-05, N = 7824) (0.71, -0.044, P = 0.41, N = 859)
rs6824858(A)/4:57439695 THEGL (0.95, -0.013, P = 1e-05, N = 7824) (0.85, -0.0045, P = 0.95, N = 859)
rs12649436(A)/4:59015876 intergenic (0.51, 0.0038, P = 2.7e-05, N = 7824) (0.75, 0.027, P = 0.63, N = 859)
rs13112589(A)/4:8525162 intergenic (0.42, -0.0038, P = 2.7e-05, N = 7824) (0.16, 0.027, P = 0.68, N = 859)
rs12109383(T)/5:105956344 intergenic (0.64, -0.0039, P = 2.1e-05, N = 7824) (0.75, 0.024, P = 0.66, N = 859)
rs1697901(A)/5:11019405* CTNND2 (0.35, 0.0049, P = 6.3e-08, N = 7824) (0.18, -0.026, P = 0.67, N = 859)
rs10900784(A)/5:125514918 RP11-114J13.1 (0.42, -0.0044, P = 9.7e-07, N = 7824) (0.74, 0.017, P = 0.76, N = 859)
rs968355(A)/5:126140350* LMNB1 (0.59, 0.0037, P = 4.1e-05, N = 7824) (0.62, 0.067, P = 0.17, N = 859)
rs10071669(T)/5:126271596* MARCH3 (0.47, -0.004, P = 1e-05, N = 7824) (0.39, -0.04, P = 0.42, N = 859)
rs813165(A)/5:127144681 CTC-228N24.1 (0.61, -0.0039, P = 4e-05, N = 7824) (0.82, -0.095, P = 0.13, N = 859)
rs1422444(C)/5:128114022 SLC27A6 (0.37, 0.0039, P = 1.3e-05, N = 7824) (0.25, 0.022, P = 0.7, N = 859)
rs1434630(T)/5:136557055 SPOCK1 (0.15, 0.0071, P = 1.3e-05, N = 7824) (0.33, 0.016, P = 0.75, N = 859)
rs16903000(T)/5:13995236 intergenic (0.71, -0.0067, P = 7.9e-06, N = 7824) (0.76, 0.011, P = 0.85, N = 859)
rs2569188(A)/5:140008419 CD14 (0.51, 0.0037, P = 3.3e-05, N = 7824) (0.55, 0.016, P = 0.74, N = 859)
rs33980(C)/5:141941993 RPS12P10 (0.91, -0.0077, P = 9.1e-06, N = 7824) (0.68, 0.0051, P = 0.92, N = 859)
rs258763(A)/5:142652361 intergenic (0.56, -0.0042, P = 2.3e-06, N = 7824) (0.34, 0.059, P = 0.24, N = 859)
rs1016522(A)/5:143193326 HMHB1 (0.58, 0.0058, P = 1.6e-10, N = 7824) (0.86, -0.11, P = 0.12, N = 859)
rs161551(T)/5:143270815 intergenic (0.4, 0.0042, P = 2.7e-06, N = 7824) (0.3, 0.0049, P = 0.93, N = 859)
rs1042713(A)/5:148206440 ADRB2 (0.36, 0.0039, P = 1.5e-05, N = 7824) (0.49, 0.044, P = 0.36, N = 859)
rs4958379(A)/5:154010041* intergenic (0.43, -0.005, P = 2.2e-08, N = 7824) (0.32, -0.0063, P = 0.9, N = 859)
rs6873777(T)/5:156488903 HAVCR1 (0.38, -0.0039, P = 1.9e-05, N = 7824) (0.38, 0.027, P = 0.6, N = 859)
rs154246(T)/5:16602451 FAM134B (0.61, -0.0049, P = 6.7e-08, N = 7824) (0.47, -0.0016, P = 0.97, N = 859)
rs1501803(T)/5:166430508 intergenic (0.42, 0.0042, P = 4.6e-06, N = 7824) (0.23, 0.043, P = 0.45, N = 859)
rs1875977(T)/5:168250429* SLIT3 (0.57, 0.0038, P = 2.4e-05, N = 7824) (0.74, 0.092, P = 0.092, N = 859)
rs875184(T)/5:170124362 KCNIP1 (0.4, -0.0041, P = 5.7e-06, N = 7824) (0.18, -0.037, P = 0.54, N = 859)
rs4867633(A)/5:170258093 intergenic (0.41, -0.0036, P = 4.9e-05, N = 7824) (0.59, 0.046, P = 0.35, N = 859)
rs1559063(C)/5:172348594* ERGIC1 (0.62, 0.0052, P = 7.8e-09, N = 7824) (0.78, 0.087, P = 0.14, N = 859)
rs1549225(T)/5:174611949 intergenic (0.61, 0.0045, P = 6.1e-07, N = 7824) (0.36, 0.045, P = 0.38, N = 859)
rs5025649(A)/5:20358539 CDH18 (0.45, 0.0037, P = 4.2e-05, N = 7824) (0.83, -0.054, P = 0.4, N = 859)
rs10942222(T)/5:26970581 CDH9 (0.57, -0.0039, P = 1.5e-05, N = 7824) (0.9, 0.11, P = 0.16, N = 859)
rs2261659(C)/5:413594 AHRR (0.44, -0.0043, P = 1.6e-06, N = 7824) (0.53, 0.026, P = 0.6, N = 859)
rs7706787(T)/5:56336189 intergenic (0.12, 0.017, P = 4.1e-05, N = 7824) (0.34, -0.0039, P = 0.94, N = 859)
rs10805503(T)/5:57390158 intergenic (0.63, 0.0043, P = 2e-06, N = 7824) (0.4, 0.013, P = 0.78, N = 859)
rs347661(T)/5:62549141* intergenic (0.44, -0.0042, P = 6.8e-06, N = 7824) (0.31, 0.019, P = 0.72, N = 859)
rs4615256(A)/5:62700867 intergenic (0.53, 0.0049, P = 5e-08, N = 7824) (0.74, -0.045, P = 0.42, N = 859)
rs7730404(T)/5:72242733* intergenic (0.86, -0.012, P = 3.7e-05, N = 7824) (0.93, -0.2, P = 0.037, N = 859)
rs6862529(T)/5:75551209* SV2C (0.46, 0.0037, P = 4.4e-05, N = 7824) (0.41, 0.051, P = 0.29, N = 859)
rs3797435(A)/5:75953678 IQGAP2 (0.47, 0.0037, P = 4.1e-05, N = 7824) (0.58, -0.046, P = 0.35, N = 859)
rs353957(T)/5:77113027 TBCA (0.44, -0.0036, P = 4.6e-05, N = 7824) (0.39, 0.027, P = 0.59, N = 859)
rs1373962(T)/5:83527862 EDIL3 (0.6, 0.005, P = 2.7e-08, N = 7824) (0.72, 0.041, P = 0.45, N = 859)
rs3822782(T)/5:9245629 SEMA5A (0.43, 0.0039, P = 1.4e-05, N = 7824) (0.24, 0.0031, P = 0.96, N = 859)
rs2662269(A)/5:98076517 intergenic (0.42, 0.0045, P = 7.1e-07, N = 7824) (0.38, 0.039, P = 0.44, N = 859)
rs970079(A)/5:98119864 RGMB (0.49, -0.0041, P = 4.8e-06, N = 7824) (0.14, 0.069, P = 0.32, N = 859)
rs1876564(T)/6:106292430 intergenic (0.57, 0.0037, P = 4.6e-05, N = 7824) (0.31, 0.053, P = 0.31, N = 859)
rs2126498(T)/6:110336225 intergenic (0.62, -0.0042, P = 2.8e-06, N = 7824) (0.48, 0.0085, P = 0.86, N = 859)
rs6901004(C)/6:111554822* RP11-428F8.2 (0.57, -0.0061, P = 1.1e-11, N = 7824) (0.44, -0.042, P = 0.38, N = 859)
rs12203093(T)/6:111585382* KIAA1919 (0.86, -0.0075, P = 3.9e-06, N = 7824) (0.98, 0.094, P = 0.56, N = 859)
rs1535353(T)/6:123925257* TRDN (0.85, 0.007, P = 1.4e-05, N = 7824) (0.68, -0.086, P = 0.1, N = 859)
rs6935961(A)/6:125636350* intergenic (0.56, -0.0056, P = 3.8e-10, N = 7824) (0.23, -0.031, P = 0.59, N = 859)
rs4374833(T)/6:129169353 intergenic (0.45, 0.0037, P = 3.7e-05, N = 7824) (0.62, -0.066, P = 0.2, N = 859)
rs9482945(A)/6:129170987 intergenic (0.55, -0.0037, P = 3.7e-05, N = 7824) (0.31, 0.02, P = 0.71, N = 859)
rs11154507(A)/6:130144867* RP11-174C7.3 (0.51, 0.0039, P = 4e-05, N = 7824) (0.79, 0.046, P = 0.43, N = 859)
rs9483215(G)/6:131415664 intergenic (0.54, 0.11, P = 1.9e-06, N = 1959) (0.78, 0.031, P = 0.59, N = 859)
rs9476538(A)/6:14349707 intergenic (0.47, 0.0039, P = 2.8e-05, N = 7824) (0.49, -0.012, P = 0.81, N = 859)
rs2473156(A)/6:144660881 UTRN (0.6, -0.004, P = 1.1e-05, N = 7824) (0.92, 0.1, P = 0.25, N = 859)
rs4870304(A)/6:154991843 intergenic (0.58, 0.0041, P = 8.3e-06, N = 7824) (0.39, 0.014, P = 0.77, N = 859)
rs13197644(A)/6:159122879 SYTL3 (0.47, -0.0037, P = 5e-05, N = 7824) (0.54, 0.029, P = 0.56, N = 859)
rs17620480(T)/6:16035382 intergenic (0.46, -0.0037, P = 3.9e-05, N = 7824) (0.57, 0.042, P = 0.38, N = 859)
rs623897(A)/6:16769798 RP1-151F17.2 (0.36, -0.004, P = 1.5e-05, N = 7824) (0.2, 0.02, P = 0.73, N = 859)
rs806971(G)/6:26144791* intergenic (0.013, -0.93, P = 1.8e-06, N = 1959) (0.33, 0.011, P = 0.84, N = 859)
rs10807322(A)/6:45542617* RP1-166H4.2 (0.59, 0.0043, P = 2e-06, N = 7824) (0.39, 0.026, P = 0.61, N = 859)
rs9464137(A)/6:54669826 intergenic (0.56, 0.0041, P = 4.4e-06, N = 7824) (0.5, -0.0016, P = 0.97, N = 859)
rs508920(A)/6:69574261 BAI3 (0.52, -0.0038, P = 2e-05, N = 7824) (0.23, 0.053, P = 0.34, N = 859)
rs9346328(T)/6:70382139* LMBRD1 (0.41, -0.0038, P = 2.8e-05, N = 7824) (0.23, 0.0093, P = 0.87, N = 859)
rs2063601(A)/6:78578306* MEI4 (0.25, -0.011, P = 5.2e-06, N = 7824) (0.063, -0.31, P = 0.0023, N = 859)
rs6454864(T)/6:92234894* MIR4643 (0.37, 0.004, P = 8.9e-06, N = 7824) (0.29, 0.086, P = 0.1, N = 859)
rs201262(T)/6:9987615* OFCC1 (0.56, 0.0047, P = 1.4e-07, N = 7824) (0.59, 0.085, P = 0.085, N = 859)
rs42162(T)/7:106475927 intergenic (0.55, 0.004, P = 8.2e-06, N = 7824) (0.76, 0.042, P = 0.46, N = 859)
rs40903(A)/7:108173891 PNPLA8 (0.62, -0.0039, P = 1.8e-05, N = 7824) (0.79, 0.034, P = 0.56, N = 859)
rs13228748(T)/7:109785262 intergenic (0.35, 0.004, P = 1.3e-05, N = 7824) (0.098, -0.053, P = 0.52, N = 859)
rs2709480(T)/7:114694662* intergenic (0.63, 0.0037, P = 3.8e-05, N = 7824) (0.46, -0.096, P = 0.046, N = 859)
rs10261671(T)/7:120783551* CPED1 (0.38, -0.0037, P = 3.8e-05, N = 7824) (0.35, 0.027, P = 0.59, N = 859)
rs10225863(T)/7:131910303* PLXNA4 (0.39, -0.004, P = 9.8e-06, N = 7824) (0.57, 0.043, P = 0.37, N = 859)
rs6946136(A)/7:135423424 FAM180A (0.61, 0.0037, P = 4e-05, N = 7824) (0.89, -0.032, P = 0.69, N = 859)
rs38271(A)/7:14307031 DGKB (0.59, -0.0051, P = 1.2e-08, N = 7824) (0.18, -0.013, P = 0.84, N = 859)
rs4725832(T)/7:149543751 ZNF862 (0.59, 0.0038, P = 3.1e-05, N = 7824) (0.29, 0.087, P = 0.11, N = 859)
rs11760861(G)/7:155938607 intergenic (0.19, 0.23, P = 6.4e-06, N = 1959) (0.37, 0.032, P = 0.52, N = 859)
rs1000137(T)/7:157644152* PTPRN2 (0.47, -0.005, P = 5.7e-07, N = 7824) (0.59, 0.025, P = 0.61, N = 859)
rs12533939(A)/7:158450965 NCAPG2 (0.39, 0.0045, P = 6.5e-07, N = 7824) (0.58, 0.033, P = 0.49, N = 859)
rs12531256(T)/7:17281820 intergenic (0.5, 0.0037, P = 3.6e-05, N = 7824) (0.26, -0.039, P = 0.48, N = 859)
rs3800908(T)/7:2159437 MAD1L1 (0.42, -0.0081, P = 4.2e-05, N = 7824) (0.57, 0.033, P = 0.48, N = 859)
rs2722380(A)/7:24376142 intergenic (0.59, 0.0042, P = 3.9e-06, N = 7824) (0.45, -0.031, P = 0.53, N = 859)
rs4720151(A)/7:34160523* BMPER (0.6, 0.0039, P = 1.7e-05, N = 7824) (0.75, -0.085, P = 0.12, N = 859)
rs2109365(C)/7:38303120 TRGC1 (0.33, 0.16, P = 6.4e-06, N = 1959) (0.57, 9.9e-05, P = 1, N = 859)
rs11535192(C)/7:39324349* POU6F2 (0.39, -0.0039, P = 1.4e-05, N = 7824) (0.36, 0.048, P = 0.35, N = 859)
rs12702179(T)/7:45913913 intergenic (0.5, 0.0038, P = 2.1e-05, N = 7824) (0.41, 0.044, P = 0.39, N = 859)
rs1997238(A)/7:48538770 ABCA13 (0.51, 0.0045, P = 6.1e-07, N = 7824) (0.91, 0.097, P = 0.23, N = 859)
rs10239854(A)/7:55714282* TUBBP6 (0.46, -0.0039, P = 1.4e-05, N = 7824) (0.3, -0.11, P = 0.033, N = 859)
rs6947698(C)/7:55954993* MRPS17 (0.46, -0.004, P = 8.3e-06, N = 7824) (0.4, 0.1, P = 0.037, N = 859)
rs3843530(T)/7:64732388 AC092685.1 (0.06, -0.0099, P = 5e-05, N = 7824) (0.1, 0.076, P = 0.35, N = 859)
rs10256726(T)/7:70547132 intergenic (0.5, -0.0039, P = 1.8e-05, N = 7824) (0.48, -0.016, P = 0.74, N = 859)
rs2158735(C)/7:70601065 WBSCR17 (0.51, 0.0038, P = 2.8e-05, N = 7824) (0.41, 0.038, P = 0.43, N = 859)
rs1179636(A)/7:75230392 HIP1 (0.54, -0.0045, P = 1.8e-06, N = 7824) (0.89, 0.045, P = 0.55, N = 859)
rs10247586(T)/7:7980650 RPA3-AS1 (0.41, 0.0039, P = 1.5e-05, N = 7824) (0.5, -0.039, P = 0.42, N = 859)
rs7810390(A)/7:82662097 PCLO (0.59, -0.0045, P = 5.6e-07, N = 7824) (0.45, 0.079, P = 0.11, N = 859)
rs1208853(A)/7:88904674 ZNF804B (0.61, 0.0039, P = 1.8e-05, N = 7824) (0.53, 0.011, P = 0.83, N = 859)
rs2051957(T)/7:89709883* STEAP2-AS1 (0.75, 0.0066, P = 1.7e-05, N = 7824) (0.33, 0.042, P = 0.41, N = 859)
rs651430(A)/7:99429843* CYP3A43 (0.53, 0.004, P = 1.4e-05, N = 7824) (0.16, -0.043, P = 0.49, N = 859)
rs1013482(A)/8:110505710 PKHD1L1 (0.38, 0.0047, P = 1.7e-07, N = 7824) (0.54, -0.0066, P = 0.89, N = 859)
rs7463805(T)/8:110753672 intergenic (0.52, -0.0053, P = 4.6e-09, N = 7824) (0.36, 0.0033, P = 0.95, N = 859)
rs4076446(T)/8:130706301 intergenic (0.47, -0.0038, P = 3.9e-05, N = 7824) (0.48, -0.039, P = 0.42, N = 859)
rs4144737(A)/8:130761182* GSDMC (0.58, 0.004, P = 9.9e-06, N = 7824) (0.24, 0.067, P = 0.24, N = 859)
rs9649963(T)/8:131697816* intergenic (0.63, 0.0041, P = 5.8e-06, N = 7824) (0.81, -0.069, P = 0.26, N = 859)
rs7006068(T)/8:142656636* intergenic (0.63, 0.0045, P = 4.8e-07, N = 7824) (0.36, 0.093, P = 0.068, N = 859)
rs2717586(A)/8:143897882 RP11-706C16.8 (0.4, 0.0043, P = 2.3e-06, N = 7824) (0.27, -0.046, P = 0.38, N = 859)
rs1366671(T)/8:15488238* TUSC3 (0.44, -0.0041, P = 4.9e-06, N = 7824) (0.5, 0.013, P = 0.8, N = 859)
rs2604365(T)/8:15614315 TUSC3 (0.64, 0.0044, P = 1.5e-06, N = 7824) (0.87, 0.06, P = 0.4, N = 859)
rs2055092(A)/8:16838292* intergenic (0.38, -0.004, P = 1.3e-05, N = 7824) (0.41, -0.017, P = 0.72, N = 859)
rs10087419(T)/8:236656* intergenic (0.6, -0.0039, P = 1.9e-05, N = 7824) (0.3, 0.014, P = 0.78, N = 859)
rs7012981(T)/8:29383034 RP11-486M23.1 (0.52, 0.17, P = 7.4e-06, N = 1959) (0.1, -0.11, P = 0.15, N = 859)
rs4355794(A)/8:3154167 CSMD1 (0.35, -0.0038, P = 1.9e-05, N = 7824) (0.56, 0.039, P = 0.42, N = 859)
rs2554639(T)/8:3939181 CSMD1 (0.54, 0.0039, P = 3.1e-05, N = 7824) (0.23, -0.077, P = 0.19, N = 859)
rs4736967(A)/8:41182841 intergenic (0.6, 0.0037, P = 4.9e-05, N = 7824) (0.84, -0.019, P = 0.78, N = 859)
rs13281365(T)/8:55477437 RP11-53M11.3 (0.39, 0.0038, P = 3.4e-05, N = 7824) (0.1, 0.014, P = 0.87, N = 859)
rs1849395(T)/8:5657312 intergenic (0.5, -0.0039, P = 1.3e-05, N = 7824) (0.57, -0.039, P = 0.43, N = 859)
rs6471830(A)/8:60713371 intergenic (0.54, 0.0038, P = 2.2e-05, N = 7824) (0.76, -0.029, P = 0.61, N = 859)
rs7009696(T)/8:72731717* U8 (0.62, 0.0041, P = 6.2e-06, N = 7824) (0.49, -0.057, P = 0.23, N = 859)
rs4588900(A)/8:73890425 intergenic (0.52, 0.0038, P = 2.6e-05, N = 7824) (0.32, -0.043, P = 0.4, N = 859)
rs10808793(T)/8:74060655 intergenic (0.49, -0.0038, P = 1.9e-05, N = 7824) (0.73, 0.024, P = 0.67, N = 859)
rs75534375(T)/8:76013726 intergenic (0.07, -0.33, P = 1.7e-06, N = 1959) (0.014, 0.21, P = 0.31, N = 859)
rs2941461(T)/8:76447309 HNF4G (0.24, 0.2, P = 5.7e-06, N = 1959) (0.37, -0.036, P = 0.47, N = 859)
rs7843149(T)/8:91474961 AF070718.1 (0.39, -0.0041, P = 6.6e-06, N = 7824) (0.79, -0.011, P = 0.85, N = 859)
rs7027650(A)/9:101741969 COL15A1 (0.63, 0.0037, P = 4.6e-05, N = 7824) (0.34, 0.031, P = 0.54, N = 859)
rs1929487(A)/9:104272503* TMEM246 (0.42, -0.0041, P = 4.9e-06, N = 7824) (0.23, 0.0096, P = 0.87, N = 859)
rs833413(T)/9:10555561 PTPRD (0.48, 0.0037, P = 4.6e-05, N = 7824) (0.6, -0.02, P = 0.68, N = 859)
rs893922(A)/9:112060144 EPB41L4B (0.37, 0.0042, P = 3.9e-06, N = 7824) (0.15, -0.033, P = 0.64, N = 859)
rs915281(T)/9:119967963* ASTN2 (0.51, -0.0041, P = 4.4e-06, N = 7824) (0.25, -0.072, P = 0.19, N = 859)
rs9299251(A)/9:120184143 intergenic (0.37, -0.0037, P = 3.6e-05, N = 7824) (0.18, 0.038, P = 0.54, N = 859)
rs10819114(T)/9:128846829 RP11-343J18.2 (0.26, 0.21, P = 1.7e-06, N = 1959) (0.29, 0.022, P = 0.68, N = 859)
rs7028558(T)/9:128918482* RP11-343J18.2 (0.48, 0.0039, P = 1.2e-05, N = 7824) (0.25, -0.013, P = 0.81, N = 859)
rs625958(G)/9:136842109 VAV2 (0.6, -0.15, P = 2.4e-06, N = 1959) (0.65, -0.075, P = 0.13, N = 859)
rs2224447(C)/9:17624700* SH3GL2 (0.53, 0.0037, P = 3.5e-05, N = 7824) (0.78, -0.062, P = 0.29, N = 859)
rs2383131(T)/9:19902822 intergenic (0.44, -0.0043, P = 3.1e-06, N = 7824) (0.69, 0.031, P = 0.54, N = 859)
rs12350168(T)/9:31257450 SLC25A6P2 (0.46, 0.0037, P = 4.1e-05, N = 7824) (0.19, 0.012, P = 0.84, N = 859)
rs3780494(T)/9:33126224 B4GALT1 (0.99, -0.023, P = 7e-06, N = 7824) (0.98, 0.071, P = 0.71, N = 859)
rs776008(C)/9:37921959* SHB (0.47, 0.004, P = 1e-05, N = 7824) (0.4, 0.026, P = 0.59, N = 859)
rs458552(T)/9:4833437 RCL1 (0.59, -0.0037, P = 4.2e-05, N = 7824) (0.18, 0.026, P = 0.68, N = 859)
rs1009282(A)/9:77752967 OSTF1 (0.43, 0.0037, P = 4.4e-05, N = 7824) (0.75, 0.15, P = 0.0053, N = 859)
rs1502682(C)/9:85617668* RASEF (0.49, -0.0037, P = 3.4e-05, N = 7824) (0.47, 0.044, P = 0.35, N = 859)
rs9330454(A)/9:92515514 RP5-1050E16.2 (0.4, -0.0066, P = 6e-06, N = 7824) (0.54, 0.012, P = 0.8, N = 859)
rs6478302(T)/9:98392340 intergenic (0.38, 0.004, P = 1.1e-05, N = 7824) (0.34, 0.037, P = 0.47, N = 859)
Results from Univariable Mendelian Randomization of L-Tryptophan & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 505 0.0054 (-0.071- 0.082) P=0.89 1.2 30 0 (0- 89.1) NA NA -0.0052 P=0.038
MR-Egger 505 0.026 (-0.054- 0.11) P=0.53 1.2 30 0 (0- 89.1) 488 0.67 -0.0052 P=0.038
Weighted median 505 -0.0063 (-0.12- 0.11) P=0.91 1.2 30 0 (0- 89.1) NA NA -0.0052 P=0.038
Results from Univariable MRPRESSO of L-Tryptophan & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.01 0.04 0.14 0.89
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of L-Tryptophan & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 348 0.033 (-0.072- 0.14) P=0.54 1.6 27 0 (0- 27.3) NA NA -0.0061 P=0.049
MR-Egger 348 0.069 (-0.047- 0.18) P=0.25 1.6 27 0 (0- 27.3) 308 0.93 -0.0061 P=0.049
Weighted median 348 0.076 (-0.083- 0.23) P=0.35 1.6 27 0 (0- 27.3) NA NA -0.0061 P=0.049
Results from Univariable MRPRESSO of L-Tryptophan & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.03 0.05 0.61 0.54
beta.exposure Outlier-corrected NA NA NA NA

Uric acid

Instruments Associations with Uric acid & eGFR
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Uric acid (Shin et al/Long et al) eGFR (CSSCD)
rs9725388(A)/1:104894190 intergenic (0.19, 0.0072, P = 2.8e-05, N = 7824) (0.25, -0.097, P = 0.077, N = 859)
rs2143295(C)/1:11669919 RP1-69M21.2 (0.058, -0.31, P = 9.2e-06, N = 1958) (0.081, 0.019, P = 0.83, N = 859)
rs6427351(T)/1:157066950* ETV3L (0.94, 0.016, P = 2.7e-05, N = 7824) (0.84, 0.063, P = 0.33, N = 859)
rs1316637(T)/1:18024794 ARHGEF10L (0.58, 0.007, P = 4.3e-05, N = 7824) (0.81, -0.022, P = 0.72, N = 859)
rs17352664(A)/1:20559927* intergenic (0.11, -0.0095, P = 4.6e-05, N = 7824) (0.1, -0.012, P = 0.88, N = 859)
rs510032(T)/1:226724202 intergenic (0.17, 0.009, P = 6.8e-06, N = 7824) (0.062, 0.074, P = 0.46, N = 859)
rs12137216(A)/1:30632171 intergenic (0.89, 0.01, P = 3.7e-05, N = 7824) (0.95, -0.078, P = 0.49, N = 859)
rs13375139(T)/1:30691713* intergenic (0.17, -0.0075, P = 1.5e-05, N = 7824) (0.42, 0.024, P = 0.63, N = 859)
rs1323821(T)/1:58225872* AL137855.1 (0.43, 0.0067, P = 3.3e-05, N = 7824) (0.66, 0.0075, P = 0.88, N = 859)
rs12027847(A)/1:81766037* intergenic (0.11, 0.01, P = 3.3e-05, N = 7824) (0.028, -0.15, P = 0.3, N = 859)
rs12138486(T)/1:93865391* intergenic (0.79, 0.0074, P = 1.5e-05, N = 7824) (0.25, -0.15, P = 0.011, N = 859)
rs7906282(T)/10:19083596* intergenic (0.31, 0.008, P = 1.1e-06, N = 7824) (0.25, 0.00041, P = 0.99, N = 859)
rs35345503(AC)/10:28955618 RNU6-1067P (0.17, -0.28, P = 1.6e-07, N = 1958) (0.37, -0.013, P = 0.79, N = 859)
rs2659999(C)/10:68293030 CTNNA3 (0.81, -0.0073, P = 2.7e-05, N = 7824) (0.43, -0.02, P = 0.7, N = 859)
rs10490946(A)/10:9143876* intergenic (0.033, 0.017, P = 2.7e-05, N = 7824) (0.097, -0.071, P = 0.39, N = 859)
rs16924665(T)/11:11780607* RP11-756D7.1 (0.84, -0.0071, P = 4.2e-05, N = 7824) (0.91, -0.043, P = 0.6, N = 859)
rs353632(T)/11:35187348 CD44 (0.23, 0.013, P = 4.1e-05, N = 7824) (0.3, 0.0015, P = 0.98, N = 859)
rs4378353(T)/11:98429388 intergenic (0.49, 0.007, P = 1.3e-05, N = 7824) (0.29, 0.061, P = 0.25, N = 859)
rs12817597(T)/12:114132363 RP11-438N16.1 (0.021, 0.023, P = 2.5e-05, N = 7824) (0.013, 0.3, P = 0.17, N = 859)
rs12579148(T)/12:26803493 ITPR2 (0.19, -0.0077, P = 5.9e-06, N = 7824) (0.031, 0.067, P = 0.63, N = 859)
rs10844317(T)/12:32874640 DNM1L (0.16, -0.0086, P = 1.1e-06, N = 7824) (0.22, -0.057, P = 0.32, N = 859)
rs17782050(T)/12:4340106* intergenic (0.31, -0.0068, P = 3.3e-05, N = 7824) (0.12, -0.069, P = 0.36, N = 859)
rs7487146(A)/12:73794865 intergenic (0.88, -0.017, P = 2.5e-05, N = 7824) (0.95, 0.014, P = 0.9, N = 859)
rs35800043(C)/12:9029812 A2ML1 (0.26, -0.13, P = 9.3e-06, N = 1958) (0.13, -0.085, P = 0.24, N = 859)
rs1901044(C)/12:98218675 intergenic (0.17, 0.0071, P = 3.6e-05, N = 7824) (0.47, 0.05, P = 0.29, N = 859)
rs9557545(A)/13:101578114 NALCN-AS1 (0.032, 0.018, P = 7.8e-06, N = 7824) (0.029, -0.067, P = 0.64, N = 859)
rs4550321(A)/13:23823888* SGCG (0.36, 0.0065, P = 4.5e-05, N = 7824) (0.23, 0.064, P = 0.26, N = 859)
rs9510740(C)/13:24017110 intergenic (0.23, 0.0073, P = 1.4e-05, N = 7824) (0.18, 0.04, P = 0.53, N = 859)
rs9549021(T)/13:40543493* intergenic (0.61, -0.013, P = 2.9e-06, N = 7824) (0.59, 0.0068, P = 0.89, N = 859)
rs7327319(A)/13:40928617* RP11-172E9.2 (0.19, -0.01, P = 1.7e-05, N = 7824) (0.15, -0.009, P = 0.89, N = 859)
rs7329766(T)/13:54732465* intergenic (0.87, -0.017, P = 2e-05, N = 7824) (0.8, -0.048, P = 0.42, N = 859)
rs1540639(T)/13:82344020* intergenic (0.15, 0.0072, P = 4.5e-05, N = 7824) (0.22, 0.026, P = 0.65, N = 859)
rs10145908(C)/14:63753329* RHOJ (0.073, 0.28, P = 9.1e-06, N = 1958) (0.73, -0.057, P = 0.29, N = 859)
rs2535896(T)/14:73434531 ZFYVE1 (0.25, 0.013, P = 4.3e-05, N = 7824) (0.51, 0.012, P = 0.8, N = 859)
rs8011758(A)/14:89626459* FOXN3 (0.34, -0.0067, P = 4.8e-05, N = 7824) (0.39, 0.009, P = 0.86, N = 859)
rs1286087(T)/14:91437370 RPS6KA5 (0.84, 0.0077, P = 8.1e-06, N = 7824) (0.84, -0.029, P = 0.66, N = 859)
rs4594244(A)/15:101340649* RP11-66B24.5 (0.067, 0.014, P = 3e-05, N = 7824) (0.17, -0.06, P = 0.34, N = 859)
rs35907301(G)/15:29139319 APBA2 (0.32, -0.13, P = 6.6e-06, N = 1958) (0.77, 0.075, P = 0.19, N = 859)
rs1471226(T)/15:29888567 intergenic (0.26, -0.0067, P = 4.9e-05, N = 7824) (0.3, -0.0049, P = 0.93, N = 859)
rs12396(C)/15:52413316 GNB5 (0.54, 0.013, P = 4.5e-05, N = 7824) (0.15, -0.073, P = 0.29, N = 859)
rs17184999(T)/15:63818369* USP3 (0.85, -0.0076, P = 1.5e-05, N = 7824) (0.98, 0.043, P = 0.81, N = 859)
rs374181299(GTCTA)/16:23622399 PALB2 (0.14, 0.2, P = 8e-06, N = 1958) (0.19, 0.077, P = 0.19, N = 859)
rs12919486(A)/16:53093720* CHD9 (0.25, 0.0072, P = 2.4e-05, N = 7824) (0.17, -0.028, P = 0.66, N = 859)
rs16953268(A)/16:54286557 RP11-324D17.1 (0.069, -0.011, P = 7.7e-06, N = 7824) (0.14, 0.14, P = 0.038, N = 859)
rs62065022(C)/16:59029432 RP11-410D17.2 (0.29, 0.2, P = 1.2e-06, N = 1958) (0.082, 0.11, P = 0.21, N = 859)
rs7203578(A)/16:70758855* VAC14 (0.83, 0.0072, P = 3.1e-05, N = 7824) (0.64, 0.083, P = 0.11, N = 859)
rs17762472(A)/16:74860912* intergenic (0.71, -0.0067, P = 3.8e-05, N = 7824) (0.91, 0.061, P = 0.48, N = 859)
rs9923451(A)/16:78952439* WWOX (0.011, 0.056, P = 4e-05, N = 7824) (0.23, -0.062, P = 0.27, N = 859)
rs8080896(A)/17:14890929* intergenic (0.16, 0.0075, P = 1.7e-05, N = 7824) (0.24, 0.0013, P = 0.98, N = 859)
rs4793781(A)/17:52962115 intergenic (0.2, 0.0072, P = 2e-05, N = 7824) (0.084, 0.064, P = 0.45, N = 859)
rs35401841(G)/17:66378322 ARSG (0.086, 0.23, P = 5e-06, N = 1958) (0.064, 0.074, P = 0.46, N = 859)
rs112095783(C)/2:111785895 ACOXL (0.09, -0.29, P = 5.5e-07, N = 1958) (0.016, 0.076, P = 0.7, N = 859)
rs35613251(A)/2:130166917 intergenic (0.68, -0.13, P = 5.4e-06, N = 1958) (0.12, 0.032, P = 0.66, N = 859)
rs10490734(A)/2:138012183* THSD7B (0.83, 0.0077, P = 7.9e-06, N = 7824) (0.75, 0.063, P = 0.25, N = 859)
rs17642263(T)/2:138637196 AC020601.1 (0.47, -0.13, P = 5e-06, N = 1958) (0.34, 0.037, P = 0.46, N = 859)
rs16853726(A)/2:168396030* AC074363.1 (0.98, 0.047, P = 1.2e-05, N = 7824) (0.87, 0.19, P = 0.0077, N = 859)
rs6731691(A)/2:173331754* ITGA6 (0.17, -0.008, P = 5.3e-06, N = 7824) (0.1, -0.035, P = 0.65, N = 859)
rs10165148(C)/2:208707326 PLEKHM3 (0.34, 0.17, P = 4.2e-06, N = 1958) (0.32, -0.0011, P = 0.98, N = 859)
rs17010477(A)/2:31145844 GALNT14 (0.21, 0.0071, P = 4.7e-05, N = 7824) (0.13, 0.0076, P = 0.92, N = 859)
rs3770872(T)/2:36685242 CRIM1 (0.02, -0.63, P = 5.3e-07, N = 1958) (0.047, -0.0052, P = 0.96, N = 859)
rs7596989(G)/2:5421053* intergenic (0.61, -0.17, P = 1.4e-06, N = 1958) (0.67, -0.043, P = 0.42, N = 859)
rs2422441(G)/2:65370766 intergenic (0.72, -0.17, P = 7.4e-06, N = 1958) (0.44, 0.038, P = 0.42, N = 859)
rs2223710(C)/20:11968878 intergenic (0.17, 0.0072, P = 3e-05, N = 7824) (0.45, -0.06, P = 0.21, N = 859)
rs1569683(A)/20:12068758* intergenic (0.16, 0.0073, P = 3.4e-05, N = 7824) (0.25, 0.074, P = 0.19, N = 859)
rs742840(G)/20:2545527 TMC2 (0.11, -0.29, P = 7.6e-06, N = 1958) (0.21, 0.013, P = 0.83, N = 859)
rs6051416(C)/20:2798425 C20orf141 (0.023, 0.45, P = 6.5e-06, N = 1958) (0.28, -0.036, P = 0.49, N = 859)
rs16993414(T)/20:7308538* intergenic (0.98, 0.024, P = 4.6e-05, N = 7824) (0.96, -0.067, P = 0.59, N = 859)
rs2838690(A)/21:46222486* UBE2G2 (0.15, 0.0073, P = 3.1e-05, N = 7824) (0.16, 0.097, P = 0.15, N = 859)
rs235320(A)/21:46277214* PTTG1IP (0.82, -0.0079, P = 3.7e-06, N = 7824) (0.76, 0.05, P = 0.37, N = 859)
rs11913285(A)/22:19844492* C22orf29 (0.81, -0.0072, P = 2.9e-05, N = 7824) (0.95, 0.11, P = 0.31, N = 859)
rs2073079(A)/22:44385594 SAMM50 (0.82, 0.0072, P = 3.7e-05, N = 7824) (0.79, -0.053, P = 0.37, N = 859)
rs13318012(T)/3:106674944 LINC00882 (0.84, -0.0078, P = 8.4e-06, N = 7824) (0.86, -0.0023, P = 0.97, N = 859)
rs145484282(A)/3:159102816 IQCJ-SCHIP1 (0.062, 0.31, P = 2.7e-06, N = 1958) (0.015, -0.38, P = 0.049, N = 859)
rs10936697(A)/3:171391416 PLD1 (0.21, -0.0075, P = 1e-05, N = 7824) (0.23, 0.092, P = 0.098, N = 859)
rs73197782(G)/3:190853411 intergenic (0.21, 0.19, P = 9.2e-06, N = 1958) (0.1, -0.12, P = 0.13, N = 859)
rs1523125(A)/3:43115161 intergenic (0.17, 0.007, P = 5e-05, N = 7824) (0.041, -0.32, P = 0.0094, N = 859)
rs11130013(T)/3:43833177* intergenic (0.15, -0.0081, P = 5.1e-06, N = 7824) (0.14, 0.026, P = 0.71, N = 859)
rs872114(A)/3:68603563* intergenic (0.97, -0.021, P = 2.3e-06, N = 7824) (0.85, -0.078, P = 0.24, N = 859)
rs2133450(A)/3:7336452* GRM7 (0.55, -0.007, P = 1.2e-05, N = 7824) (0.75, 0.032, P = 0.56, N = 859)
rs6849273(T)/4:10021595 SLC2A9 (0.57, 0.017, P = 1.7e-26, N = 7824) (0.37, 0.099, P = 0.049, N = 859)
rs9926(A)/4:10076860* WDR1 (0.22, 0.015, P = 1.3e-19, N = 7824) (0.076, -0.043, P = 0.62, N = 859)
rs1978274(T)/4:10245087* intergenic (0.79, 0.029, P = 1e-66, N = 7824) (0.78, 0.071, P = 0.21, N = 859)
rs1558488(A)/4:10327414 intergenic (0.29, 0.0069, P = 2.8e-05, N = 7824) (0.49, 0.0072, P = 0.88, N = 859)
rs2868941(T)/4:10509699 CLNK (0.28, -0.01, P = 1.2e-09, N = 7824) (0.15, 0.049, P = 0.45, N = 859)
rs6835088(T)/4:114357856* intergenic (0.74, -0.0069, P = 3.5e-05, N = 7824) (0.91, 0.094, P = 0.28, N = 859)
rs706344(A)/4:140549479* intergenic (0.77, -0.0074, P = 3.7e-05, N = 7824) (0.79, -0.042, P = 0.47, N = 859)
rs62333080(G)/4:161389764 intergenic (0.26, 0.22, P = 4.3e-06, N = 1958) (0.11, -0.095, P = 0.22, N = 859)
rs17055114(A)/4:170658731* C4orf27 (0.8, -0.0073, P = 3.4e-05, N = 7824) (0.69, -0.023, P = 0.67, N = 859)
rs10866262(A)/4:184383036 intergenic (0.65, -0.11, P = 3.9e-06, N = 1958) (0.73, 0.041, P = 0.44, N = 859)
rs10517140(A)/4:28341254* intergenic (0.14, -0.0073, P = 3e-05, N = 7824) (0.03, 0.0057, P = 0.97, N = 859)
rs10024206(A)/4:33782293 RNU7-131P (0.94, 0.024, P = 1.8e-05, N = 7824) (0.73, 0.051, P = 0.35, N = 859)
rs1158742(C)/4:58139506* intergenic (0.75, 0.0072, P = 1.4e-05, N = 7824) (0.73, 0.014, P = 0.8, N = 859)
rs13110980(T)/4:63337758 intergenic (0.29, -0.21, P = 6.3e-06, N = 1958) (0.079, -0.19, P = 0.028, N = 859)
rs6857147(A)/4:71250769 SMR3B (0.96, 0.014, P = 3.9e-05, N = 7824) (0.92, 0.18, P = 0.035, N = 859)
rs2231142(T)/4:89052323* ABCG2 (0.11, 0.012, P = 8.4e-07, N = 7824) (0.027, -0.18, P = 0.23, N = 859)
rs1825043(A)/4:9573740* intergenic (0.96, 0.019, P = 5.3e-07, N = 7824) (0.69, -0.046, P = 0.38, N = 859)
rs7678732(T)/4:9693253* FAM86MP (0.037, -0.019, P = 2.1e-06, N = 7824) (0.042, -0.022, P = 0.85, N = 859)
rs938554(C)/4:9925692* SLC2A9 (0.23, -0.035, P = 5.8e-93, N = 7824) (0.46, -0.014, P = 0.77, N = 859)
rs233340(A)/5:13592425 intergenic (0.071, -0.013, P = 2.5e-06, N = 7824) (0.11, 0.18, P = 0.024, N = 859)
rs13159834(C)/5:141045281* ARAP3 (0.84, -0.0072, P = 4.4e-05, N = 7824) (0.88, 0.0085, P = 0.91, N = 859)
rs11749230(T)/5:149146535* PPARGC1B (0.054, -0.024, P = 3.4e-05, N = 7824) (0.25, 0.033, P = 0.56, N = 859)
rs9313506(T)/5:169948896* KCNIP1 (0.67, -0.0069, P = 2e-05, N = 7824) (0.78, -0.011, P = 0.86, N = 859)
rs11741189(T)/5:179543546* RASGEF1C (0.18, -0.0087, P = 3.8e-07, N = 7824) (0.14, 0.00046, P = 0.99, N = 859)
rs11750694(A)/5:29023304* intergenic (0.16, 0.0074, P = 2.7e-05, N = 7824) (0.048, -0.014, P = 0.9, N = 859)
rs2956574(A)/5:36498183* intergenic (0.73, 0.0068, P = 4.7e-05, N = 7824) (0.5, -0.0049, P = 0.92, N = 859)
rs10058947(T)/5:74227503 CTD-2503O16.1 (0.79, 0.22, P = 5.2e-07, N = 1958) (0.41, -0.018, P = 0.71, N = 859)
rs6927639(A)/6:108009018 intergenic (0.85, -0.0078, P = 9.3e-06, N = 7824) (0.88, -0.15, P = 0.04, N = 859)
rs4712645(T)/6:21970303 CASC15 (0.97, -0.47, P = 9.9e-06, N = 1958) (0.62, -0.054, P = 0.28, N = 859)
rs12614(T)/6:31914179* CFB (0.083, -0.26, P = 3.8e-06, N = 1958) (0.33, 0.08, P = 0.12, N = 859)
rs1338715(C)/6:87243828 intergenic (0.69, -0.14, P = 5e-06, N = 1958) (0.37, -0.017, P = 0.74, N = 859)
rs6941452(T)/6:90678323 BACH2 (0.28, -0.0071, P = 4.5e-05, N = 7824) (0.46, -0.0089, P = 0.85, N = 859)
rs10229191(T)/7:143796891* OR2A12 (0.88, -0.022, P = 1.2e-05, N = 7824) (0.64, 0.0064, P = 0.89, N = 859)
rs4724354(T)/7:45104623* CCM2 (0.78, -0.0075, P = 1.3e-05, N = 7824) (0.74, 0.0045, P = 0.94, N = 859)
rs9785033(T)/7:92537054 AC002454.1 (0.17, 0.0076, P = 1.6e-05, N = 7824) (0.5, -0.016, P = 0.73, N = 859)
rs11786665(A)/8:144550160* ZC3H3 (0.068, -0.011, P = 4.4e-05, N = 7824) (0.019, -0.041, P = 0.81, N = 859)
rs6982652(T)/8:4977252* intergenic (0.73, 0.0071, P = 1.8e-05, N = 7824) (0.38, -0.077, P = 0.12, N = 859)
rs10957085(T)/8:60217240 intergenic (0.15, 0.17, P = 6.1e-06, N = 1958) (0.52, -0.033, P = 0.49, N = 859)
rs6980733(T)/8:84738607 intergenic (0.5, -0.007, P = 1.5e-05, N = 7824) (0.86, -0.031, P = 0.66, N = 859)
rs11791985(A)/9:102507514 RP11-554F20.1 (0.15, -0.0075, P = 2.2e-05, N = 7824) (0.034, -0.065, P = 0.61, N = 859)
rs10981877(C)/9:116431022 RP11-18B16.2 (0.68, 0.007, P = 2.4e-05, N = 7824) (0.44, 0.05, P = 0.3, N = 859)
rs10982829(T)/9:118347052* intergenic (0.035, -0.64, P = 2.4e-08, N = 1958) (0.11, 0.019, P = 0.81, N = 859)
rs10513281(C)/9:119812714 ASTN2 (0.83, -0.0075, P = 1.6e-05, N = 7824) (0.83, -0.12, P = 0.067, N = 859)
rs13288611(C)/9:28501477* LINGO2 (0.3, -0.0072, P = 1.4e-05, N = 7824) (0.34, 0.028, P = 0.6, N = 859)
rs10973300(A)/9:37331037 ZCCHC7 (0.16, 0.0079, P = 3.9e-05, N = 7824) (0.076, 0.16, P = 0.083, N = 859)
Results from Univariable Mendelian Randomization of Uric acid & eGFR - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 124 -0.026 (-0.11- 0.06) P=0.55 5.8 35 0 (0- 87.5) NA NA 0.0023 P=0.73
MR-Egger 124 -0.035 (-0.14- 0.065) P=0.49 5.8 35 0 (0- 87.5) 128 0.34 0.0023 P=0.73
Weighted median 124 -0.034 (-0.16- 0.094) P=0.61 5.8 35 0 (0- 87.5) NA NA 0.0023 P=0.73
Results from Univariable MRPRESSO of Uric acid & eGFR - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.03 0.04 -0.59 0.55
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Uric acid & eGFR - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 64 -0.0055 (-0.12- 0.11) P=0.92 9 29 0.000742 (0- 98.9) NA NA 0.0025 P=0.82
MR-Egger 64 -0.015 (-0.15- 0.12) P=0.83 9 29 0.000742 (0- 98.9) 80 0.063 0.0025 P=0.82
Weighted median 64 -0.012 (-0.15- 0.13) P=0.87 9 29 0.000742 (0- 98.9) NA NA 0.0025 P=0.82
Results from Univariable MRPRESSO of Uric acid & eGFR - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.01 0.06 -0.1 0.92
beta.exposure Outlier-corrected NA NA NA NA

Cholecystectomy

Deoxycholic acid glycine conjugate

Instruments Associations with Deoxycholic acid glycine conjugate & Cholecystectomy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Deoxycholic acid glycine conjugate (Shin et al/Long et al) Cholecystectomy (CSSCD)
rs1776220(T)/1:10874522* intergenic (0.55, -0.066, P = 1e-05, N = 1457) (0.28, -0.23, P = 0.13, N = 1084)
rs6585252(C)/10:115723678* intergenic (0.96, -0.15, P = 8.5e-07, N = 1457) (0.76, -0.23, P = 0.14, N = 1084)
rs10741178(T)/10:130903004* intergenic (0.21, 0.092, P = 3.6e-05, N = 868) (0.72, 0.13, P = 0.4, N = 1084)
rs2647530(A)/11:9105636* SCUBE2 (0.88, -0.084, P = 3.9e-05, N = 1457) (0.84, -0.16, P = 0.38, N = 1084)
rs963167(A)/11:9111558* SCUBE2 (0.12, 0.093, P = 1.6e-05, N = 1457) (0.16, 0.0033, P = 0.99, N = 1084)
rs833718(A)/12:103071086* intergenic (0.47, -0.056, P = 2.6e-05, N = 1457) (0.37, -0.065, P = 0.63, N = 1084)
rs9669375(T)/12:15188765* intergenic (0.34, -0.089, P = 2.3e-05, N = 868) (0.31, 0.24, P = 0.11, N = 1084)
rs806784(T)/12:32438189* BICD1 (0.72, -0.095, P = 1.5e-06, N = 868) (0.45, -0.055, P = 0.7, N = 1084)
rs10506675(T)/12:75481828* KCNC2 (0.096, 0.088, P = 4e-05, N = 1457) (0.12, -0.23, P = 0.27, N = 1084)
rs9301881(T)/13:94105286* GPC6 (0.57, 0.059, P = 5.8e-06, N = 1457) (0.74, 0.055, P = 0.71, N = 1084)
rs8016700(A)/14:100695157* RP11-638I2.4 (0.045, 0.14, P = 4.7e-05, N = 1457) (0.1, -0.026, P = 0.91, N = 1084)
rs17124276(T)/14:88685076* KCNK10 (0.22, 0.07, P = 1.9e-05, N = 1457) (0.14, 0.26, P = 0.19, N = 1084)
rs3825678(T)/14:88693676* KCNK10 (0.26, 0.061, P = 4.9e-05, N = 1457) (0.37, 0.22, P = 0.1, N = 1084)
rs11642055(A)/16:56644265* MT2A (0.15, -0.093, P = 1.9e-05, N = 1457) (0.026, -0.58, P = 0.18, N = 1084)
rs16966727(A)/16:63943790* intergenic (0.033, 0.22, P = 1.8e-05, N = 868) (0.081, 0.0045, P = 0.99, N = 1084)
rs7190849(A)/16:79472854* intergenic (0.92, -0.1, P = 4e-05, N = 1457) (0.84, 0.15, P = 0.42, N = 1084)
rs4432315(T)/18:31293792* ASXL3 (0.5, -0.054, P = 3.1e-05, N = 1457) (0.58, -0.067, P = 0.63, N = 1084)
rs11660001(A)/18:55220229* FECH (0.21, 0.077, P = 2.8e-05, N = 1457) (0.12, 0.085, P = 0.69, N = 1084)
rs4808544(T)/19:17083711* CPAMD8 (0.22, 0.069, P = 2.2e-05, N = 1457) (0.38, -0.036, P = 0.8, N = 1084)
rs7257166(T)/19:17788804* UNC13A (0.83, -0.075, P = 2.2e-05, N = 1457) (0.44, 0.27, P = 0.048, N = 1084)
rs737094(A)/2:100089078* REV1 (0.28, -0.062, P = 1.7e-05, N = 1457) (0.095, -0.06, P = 0.8, N = 1084)
rs7561272(T)/2:121856858* intergenic (0.98, -0.27, P = 3.1e-05, N = 868) (0.78, -0.095, P = 0.54, N = 1084)
rs10490230(A)/2:50538327* NRXN1 (0.13, 0.084, P = 3.3e-05, N = 1457) (0.29, -0.07, P = 0.64, N = 1084)
rs12477733(T)/2:72347041* intergenic (0.052, 0.13, P = 8.2e-06, N = 1457) (0.21, 0.017, P = 0.91, N = 1084)
rs2420201(A)/2:72356370* CYP26B1 (0.049, 0.15, P = 1.9e-06, N = 1457) (0.14, -0.25, P = 0.18, N = 1084)
rs6081530(A)/20:19179535* intergenic (0.27, 0.086, P = 2.3e-05, N = 868) (0.028, -0.62, P = 0.11, N = 1084)
rs1741315(A)/20:4155948* SMOX (0.42, -0.059, P = 2e-05, N = 1457) (0.15, 0.14, P = 0.45, N = 1084)
rs133588(A)/22:48666450* MIR3201 (0.84, -0.077, P = 2e-05, N = 1457) (0.51, -0.17, P = 0.2, N = 1084)
rs2360865(A)/3:143407129* SLC9A9 (0.35, -0.061, P = 1.1e-05, N = 1457) (0.12, -0.3, P = 0.13, N = 1084)
rs6797793(T)/3:147087164* RP11-649A16.1 (0.83, -0.1, P = 2.1e-05, N = 868) (0.5, 0.038, P = 0.78, N = 1084)
rs7609993(A)/3:5858488* intergenic (0.83, 0.076, P = 1.8e-05, N = 1457) (0.83, 0.033, P = 0.86, N = 1084)
rs6445500(T)/3:65712905* MAGI1 (0.3, 0.059, P = 3.9e-05, N = 1457) (0.5, 0.12, P = 0.38, N = 1084)
rs329044(A)/3:7748565* GRM7 (0.97, -0.18, P = 4.5e-05, N = 1457) (0.87, -0.23, P = 0.24, N = 1084)
rs230526(A)/4:103458825* NFKB1 (0.4, 0.057, P = 2.3e-05, N = 1457) (0.42, -0.044, P = 0.74, N = 1084)
rs13124866(A)/4:137834834* RP11-138I17.1 (0.41, -0.066, P = 1.3e-05, N = 1457) (0.3, 0.14, P = 0.34, N = 1084)
rs9312547(T)/4:174620399* intergenic (0.55, -0.06, P = 2.5e-05, N = 1457) (0.71, 0.35, P = 0.022, N = 1084)
rs17746543(A)/4:55227440* intergenic (0.51, -0.088, P = 3.7e-06, N = 868) (0.095, 0.25, P = 0.3, N = 1084)
rs420460(T)/5:150548930* intergenic (0.37, -0.061, P = 2.3e-05, N = 1457) (0.44, 0.076, P = 0.58, N = 1084)
rs2591578(A)/5:165407709* intergenic (0.3, 0.06, P = 2.5e-05, N = 1457) (0.18, -0.17, P = 0.34, N = 1084)
rs6881524(T)/5:174168668* intergenic (0.29, -0.12, P = 4.8e-05, N = 868) (0.47, 0.2, P = 0.13, N = 1084)
rs11949031(A)/5:2370336* intergenic (0.16, 0.075, P = 3.5e-05, N = 1457) (0.21, -0.0025, P = 0.99, N = 1084)
rs2524222(T)/6:30511170* GNL1 (0.23, -0.07, P = 2.1e-05, N = 1457) (0.058, 0.078, P = 0.79, N = 1084)
rs7746971(T)/6:52742295* RP11-392A23.5 (0.96, -0.18, P = 4e-05, N = 868) (0.74, 0.26, P = 0.093, N = 1084)
rs4338010(T)/7:152624870* intergenic (0.079, -0.11, P = 5.7e-06, N = 1457) (0.32, 0.0034, P = 0.98, N = 1084)
rs3905501(T)/7:76542080* UPK3B (0.83, 0.11, P = 1.3e-05, N = 868) (0.89, -0.42, P = 0.066, N = 1084)
rs10253564(T)/7:85262972* AC092013.1 (0.27, -0.095, P = 2.6e-05, N = 868) (0.83, 0.46, P = 0.013, N = 1084)
rs818555(A)/8:49999211* intergenic (0.5, -0.056, P = 3.3e-05, N = 1457) (0.32, 0.019, P = 0.9, N = 1084)
rs4734519(T)/8:92358729* SLC26A7 (0.67, 0.061, P = 1.6e-05, N = 1457) (0.52, -0.02, P = 0.89, N = 1084)
rs12349595(T)/9:121310484* intergenic (0.86, 0.081, P = 3.1e-05, N = 1457) (0.8, -0.097, P = 0.57, N = 1084)
rs7856830(T)/9:136457146* intergenic (0.15, -0.089, P = 2.3e-06, N = 1457) (0.5, 0.16, P = 0.25, N = 1084)
Results from Univariable Mendelian Randomization of Deoxycholic acid glycine conjugate & Cholecystectomy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 50 0.76 (0.47- 1.2) P=0.28 2.6 11 11.1 (0- 52.3) NA NA -0.018 P=0.77
MR-Egger 50 0.89 (0.28- 2.9) P=0.85 2.6 11 11.1 (0- 52.3) 57 0.18 -0.018 P=0.77
Weighted median 50 1 (0.48- 2.2) P=0.95 2.6 11 11.1 (0- 52.3) NA NA -0.018 P=0.77
Results from Univariable MRPRESSO of Deoxycholic acid glycine conjugate & Cholecystectomy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.27 0.25 -1.08 0.29
beta.exposure Outlier-corrected NA NA NA NA

Results from Univariable Mendelian Randomization of Deoxycholic acid glycine conjugate & Cholecystectomy - model2

Results from Univariable MRPRESSO of Deoxycholic acid glycine conjugate & Cholecystectomy - model2

Taurodeoxycholic acid

Instruments Associations with Taurodeoxycholic acid & Cholecystectomy
Association of Variant with… (EAF, Beta, P Value, N)
SNP (hg19) Gene Region Taurodeoxycholic acid (Shin et al/Long et al) Cholecystectomy (CSSCD)
rs1942235(C)/1:116083074* intergenic (0.9, 0.32, P = 3.7e-06, N = 1943) (0.55, -0.034, P = 0.8, N = 1084)
rs1737349(T)/1:15124318 KAZN (0.56, 0.054, P = 4.6e-05, N = 963) (0.59, 0.34, P = 0.013, N = 1084)
rs2805468(G)/1:237721111* RYR2 (0.7, -0.13, P = 7.7e-06, N = 1943) (0.43, -0.16, P = 0.25, N = 1084)
rs4294448(T)/1:248847828* OR14I1 (0.88, 0.081, P = 4.2e-05, N = 963) (0.68, -0.093, P = 0.52, N = 1084)
rs16829526(T)/1:42907711 ZMYND12 (0.14, -0.062, P = 2.6e-05, N = 1543) (0.045, -0.25, P = 0.44, N = 1084)
rs691135(A)/1:87266383* intergenic (0.037, -0.11, P = 1.9e-05, N = 1543) (0.089, -0.16, P = 0.48, N = 1084)
rs1220398(A)/1:9994339* LZIC (0.13, -0.062, P = 4.2e-05, N = 1543) (0.51, 0.11, P = 0.4, N = 1084)
rs10741178(T)/10:130903004* intergenic (0.21, 0.065, P = 4.3e-05, N = 963) (0.72, 0.13, P = 0.4, N = 1084)
rs12781751(T)/10:31872826* intergenic (0.54, 0.13, P = 5.7e-06, N = 1943) (0.48, 0.099, P = 0.46, N = 1084)
rs3004260(A)/10:43487986* intergenic (0.4, -0.046, P = 1.4e-05, N = 1543) (0.32, 0.23, P = 0.12, N = 1084)
rs7067796(A)/10:86843226 intergenic (0.78, 0.05, P = 2.7e-05, N = 1543) (0.52, -0.095, P = 0.48, N = 1084)
rs17403795(A)/11:10581217* LYVE1 (0.12, 0.073, P = 5.6e-06, N = 1543) (0.022, -0.43, P = 0.37, N = 1084)
rs508479(A)/11:119775811* intergenic (0.19, 0.055, P = 2.1e-05, N = 1543) (0.46, 0.13, P = 0.37, N = 1084)
rs11234448(A)/11:85568363 CCDC83 (0.046, -0.51, P = 3e-07, N = 1943) (0.058, -0.31, P = 0.28, N = 1084)
rs10898422(T)/11:85582459 CCDC83 (0.047, -0.49, P = 4.9e-07, N = 1943) (0.11, 0.36, P = 0.1, N = 1084)
rs11234461(T)/11:85596772 CCDC83 (0.047, -0.5, P = 1.3e-07, N = 1943) (0.087, -0.2, P = 0.42, N = 1084)
rs2647873(A)/12:103081192* intergenic (0.49, 0.043, P = 2.6e-05, N = 1543) (0.16, 0.23, P = 0.22, N = 1084)
rs7961079(A)/12:109123064* CORO1C (0.62, 0.053, P = 1.5e-06, N = 1543) (0.92, 0.22, P = 0.38, N = 1084)
rs11170624(T)/12:54030238 RP11-972K6.1 (0.16, 0.057, P = 4.4e-05, N = 1543) (0.51, -0.42, P = 0.0011, N = 1084)
rs7299605(G)/12:77285134 intergenic (0.15, -0.27, P = 3.2e-06, N = 1943) (0.15, 0.31, P = 0.11, N = 1084)
rs17022499(A)/12:94901589* intergenic (0.23, 0.054, P = 9.7e-06, N = 1543) (0.082, 0.043, P = 0.86, N = 1084)
rs12428322(T)/13:83109538* intergenic (0.14, 0.063, P = 3.8e-05, N = 1543) (0.13, -0.012, P = 0.95, N = 1084)
rs7984555(A)/13:90887749* KRT18P27 (0.16, -0.061, P = 2e-05, N = 1543) (0.089, -0.23, P = 0.32, N = 1084)
rs10146068(A)/14:51820214 RP11-255G12.2 (0.18, -0.23, P = 2.8e-06, N = 1943) (0.32, -0.2, P = 0.17, N = 1084)
rs7140891(T)/14:97171176 intergenic (0.98, -0.19, P = 2.2e-05, N = 963) (0.88, -0.031, P = 0.88, N = 1084)
rs3803481(A)/15:61278958* RORA (0.81, -0.068, P = 3.4e-05, N = 963) (0.71, -0.073, P = 0.62, N = 1084)
rs1532761(G)/15:97323639 SPATA8 (0.45, -0.15, P = 3.7e-06, N = 1943) (0.51, 0.15, P = 0.25, N = 1084)
rs1362633(A)/16:50062572* CNEP1R1 (0.73, -0.046, P = 3.3e-05, N = 1543) (0.42, 0.043, P = 0.76, N = 1084)
rs7184864(A)/16:50188783 PAPD5 (0.8, -0.058, P = 9.1e-06, N = 1543) (0.62, -0.03, P = 0.82, N = 1084)
rs732329(A)/16:83392422* CDH13 (0.12, 0.066, P = 1.9e-05, N = 1543) (0.25, 0.027, P = 0.86, N = 1084)
rs12452524(T)/17:36581020 ARHGAP23 (0.81, 0.068, P = 3.8e-05, N = 1543) (0.56, -0.14, P = 0.3, N = 1084)
rs75587136(A)/18:65460203 RP11-638L3.1 (0.11, -0.23, P = 3.8e-06, N = 1943) (0.03, -0.93, P = 0.018, N = 1084)
rs12968034(T)/18:7023548 LAMA1 (0.031, -0.13, P = 4.4e-05, N = 1543) (0.049, -0.15, P = 0.63, N = 1084)
rs5022665(A)/19:15783162 CYP4F12 (0.89, 0.074, P = 3.3e-05, N = 1543) (0.89, 0.034, P = 0.87, N = 1084)
rs7251585(T)/19:17800702 UNC13A (0.058, 0.092, P = 3.3e-05, N = 1543) (0.041, -0.41, P = 0.25, N = 1084)
rs10490431(T)/2:17108634* intergenic (0.052, -0.093, P = 3e-05, N = 1543) (0.031, -0.49, P = 0.21, N = 1084)
rs1153699(T)/2:175922786* intergenic (0.24, 0.06, P = 3.9e-06, N = 1543) (0.4, -0.088, P = 0.53, N = 1084)
rs371887376(TA)/2:183851142 NCKAP1 (0.02, -0.64, P = 6e-06, N = 1943) (0.13, -0.13, P = 0.51, N = 1084)
rs1898906(A)/2:188892386* LINC01090 (0.03, 0.14, P = 4.1e-06, N = 1543) (0.1, -0.15, P = 0.5, N = 1084)
rs1377635(T)/2:5261555* intergenic (0.61, 0.14, P = 9.7e-06, N = 1943) (0.52, 0.021, P = 0.87, N = 1084)
rs17588324(T)/2:68310748 C1D (0.87, -0.063, P = 4.8e-05, N = 1543) (0.95, 0.32, P = 0.33, N = 1084)
rs11906184(C)/20:58785070* RP5-1043L13.1 (0.022, -0.55, P = 3.5e-06, N = 1943) (0.081, -0.27, P = 0.29, N = 1084)
rs1297246(T)/21:16726906* intergenic (0.43, -0.045, P = 2.7e-05, N = 1543) (0.14, 0.15, P = 0.45, N = 1084)
rs2032297(C)/21:22455320* NCAM2 (0.79, 0.057, P = 3.9e-06, N = 1543) (0.57, -0.019, P = 0.89, N = 1084)
rs2776341(A)/21:42490274* intergenic (0.48, -0.045, P = 2.2e-05, N = 1543) (0.6, -0.1, P = 0.46, N = 1084)
rs8137495(A)/22:23972409 C22orf43 (0.74, 0.06, P = 7.8e-06, N = 1543) (0.74, 0.0029, P = 0.98, N = 1084)
rs28453905(C)/3:135665019 intergenic (0.31, 0.19, P = 8.7e-06, N = 1943) (0.49, 0.094, P = 0.49, N = 1084)
rs1799598(A)/3:172409798 NCEH1 (0.79, 0.068, P = 1.3e-05, N = 963) (0.75, 0.022, P = 0.89, N = 1084)
rs112391358(CA)/3:184673755 VPS8 (0.1, -0.3, P = 4.6e-07, N = 1943) (0.94, 0.2, P = 0.48, N = 1084)
rs11131020(A)/3:65411716* MAGI1 (0.53, 0.048, P = 4.6e-05, N = 1543) (0.92, 0.055, P = 0.84, N = 1084)
rs11712688(A)/3:71379546* FOXP1 (0.47, 0.043, P = 1.4e-05, N = 1543) (0.13, -0.081, P = 0.69, N = 1084)
rs1445516(A)/4:137797233 RP11-138I17.1 (0.29, 0.047, P = 3.3e-05, N = 1543) (0.15, -0.1, P = 0.57, N = 1084)
rs4076797(T)/4:159225610 intergenic (0.051, 0.098, P = 2e-05, N = 1543) (0.31, 0.17, P = 0.23, N = 1084)
rs4632709(T)/4:159246141 RXFP1 (0.95, -0.15, P = 4e-07, N = 963) (0.68, -0.19, P = 0.17, N = 1084)
rs4692552(C)/4:169764631* PALLD (0.28, 0.2, P = 6.6e-06, N = 1943) (0.096, -0.089, P = 0.7, N = 1084)
rs929617(A)/4:18240774* intergenic (0.17, 0.062, P = 1.6e-05, N = 1543) (0.02, 0.42, P = 0.41, N = 1084)
rs11728685(A)/4:18465884* intergenic (0.35, -0.056, P = 3e-05, N = 963) (0.21, 0.032, P = 0.85, N = 1084)
rs6553268(T)/4:189956524* intergenic (0.074, 0.098, P = 4.8e-05, N = 963) (0.25, -0.17, P = 0.27, N = 1084)
rs2291530(A)/4:20756007 KCNIP4 (0.02, 0.16, P = 2.7e-05, N = 1543) (0.042, 0.4, P = 0.22, N = 1084)
rs10464005(C)/5:103769981 RP11-6N13.1 (0.3, -0.23, P = 2e-06, N = 1943) (0.23, 0.23, P = 0.16, N = 1084)
rs1820806(A)/5:108720463 PJA2 (0.94, 0.087, P = 4.4e-05, N = 1543) (0.61, 0.015, P = 0.92, N = 1084)
rs289027(A)/5:114109101* intergenic (0.34, 0.045, P = 3.7e-05, N = 1543) (0.14, -0.07, P = 0.73, N = 1084)
rs11241933(A)/5:126944341 intergenic (0.27, -0.061, P = 1.1e-06, N = 1543) (0.14, -0.054, P = 0.78, N = 1084)
rs3733672(A)/5:149439494* CSF1R (0.11, 0.068, P = 2.6e-05, N = 1543) (0.1, -0.39, P = 0.092, N = 1084)
rs905177(T)/5:18833784 intergenic (0.6, -0.068, P = 4.8e-05, N = 963) (0.79, 0.17, P = 0.29, N = 1084)
rs11949031(A)/5:2370336* intergenic (0.16, 0.066, P = 1.5e-06, N = 1543) (0.21, -0.0025, P = 0.99, N = 1084)
rs12654530(T)/5:77490596* AP3B1 (0.052, 0.075, P = 4e-05, N = 1543) (0.038, -0.16, P = 0.64, N = 1084)
rs7718530(A)/5:92485295 intergenic (0.32, -0.14, P = 8e-06, N = 1943) (0.53, 0.2, P = 0.15, N = 1084)
rs4896370(A)/6:138818837 NHSL1 (0.35, 0.056, P = 4.2e-06, N = 1543) (0.39, -0.014, P = 0.92, N = 1084)
rs7763112(A)/6:159699814 intergenic (0.82, 0.056, P = 2.6e-05, N = 1543) (0.53, -0.15, P = 0.25, N = 1084)
rs9347691(A)/6:163249645* PACRG (0.95, 0.094, P = 2.3e-05, N = 1543) (0.94, 0.016, P = 0.96, N = 1084)
rs10246722(A)/7:18965590 HDAC9 (0.77, 0.049, P = 3.1e-05, N = 1543) (0.89, -0.28, P = 0.18, N = 1084)
rs17150615(T)/7:29219062 CPVL (0.084, -0.079, P = 1.5e-05, N = 1543) (0.015, 0.24, P = 0.68, N = 1084)
rs4719970(C)/7:29423773* CHN2 (0.45, -0.18, P = 5.9e-06, N = 1943) (0.5, -0.033, P = 0.81, N = 1084)
rs17374391(T)/7:3507092* SDK1 (0.9, -0.067, P = 4.7e-05, N = 1543) (0.78, -0.051, P = 0.76, N = 1084)
rs6959191(A)/7:52165673* intergenic (0.016, 0.23, P = 1.9e-05, N = 963) (0.1, -0.25, P = 0.23, N = 1084)
rs2374374(A)/7:90579226 CDK14 (0.8, 0.16, P = 4e-07, N = 1943) (0.88, 0.083, P = 0.69, N = 1084)
rs1207732(T)/7:96649668 DLX5 (0.76, 0.05, P = 3.5e-05, N = 1543) (0.82, -0.069, P = 0.7, N = 1084)
rs7845099(T)/8:39316048 ADAM3A (0.89, 0.086, P = 3.2e-05, N = 1543) (0.67, 0.044, P = 0.77, N = 1084)
rs75543373(T)/8:70043220 GS1-44D20.1 (0.086, -0.28, P = 6.2e-06, N = 1943) (0.027, 0.67, P = 0.13, N = 1084)
rs10820542(A)/9:106517270 intergenic (0.15, -0.15, P = 4.2e-06, N = 1943) (0.18, 0.077, P = 0.66, N = 1084)
rs925837(T)/9:108868577 intergenic (0.59, -0.044, P = 2.9e-05, N = 1543) (0.18, -0.03, P = 0.87, N = 1084)
rs1780158(C)/9:15133616* RP11-54D18.3 (0.089, -0.073, P = 3.9e-05, N = 1543) (0.31, -0.044, P = 0.76, N = 1084)
rs144820845(CGT)/9:16855132 BNC2 (0.047, -0.42, P = 5.9e-06, N = 1943) (0.023, -0.42, P = 0.33, N = 1084)
rs3847229(A)/9:1801822 intergenic (0.74, -0.052, P = 2e-05, N = 1543) (0.25, 0.028, P = 0.86, N = 1084)
rs993233(G)/9:25890226 intergenic (0.64, -0.1, P = 9e-06, N = 1943) (0.39, 0.28, P = 0.039, N = 1084)
rs10975331(T)/9:5877594* KIAA2026 (0.036, 0.12, P = 9.6e-06, N = 1543) (0.12, 0.44, P = 0.029, N = 1084)
Results from Univariable Mendelian Randomization of Taurodeoxycholic acid & Cholecystectomy - model1
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
IVW(re) 87 1 (0.79- 1.3) P=0.95 8.8 41 4.13 (0- 43.2) NA NA -0.033 P=0.26
MR-Egger 87 1.2 (0.82- 1.7) P=0.38 8.8 41 4.13 (0- 43.2) 88 0.39 -0.033 P=0.26
Weighted median 87 1.2 (0.82- 1.8) P=0.33 8.8 41 4.13 (0- 43.2) NA NA -0.033 P=0.26
Results from Univariable MRPRESSO of Taurodeoxycholic acid & Cholecystectomy - model1
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw 0.01 0.13 0.06 0.95
beta.exposure Outlier-corrected NA NA NA NA
Results from Univariable Mendelian Randomization of Taurodeoxycholic acid & Cholecystectomy - model2
Heterogeneity Statistics
Method nSNP Beta (95% CI) Pval F Var_ex I2 Q Q_pval Egger intercept (Beta Pval)
taurodeoxycholate cholecystectomy IVW(re) 0.95 (0.67- 1.3) P=0.77 20.1 (0- 73.6) 45 12 28 NA
taurodeoxycholate cholecystectomy MR-Egger 1.2 (0.75- 2.1) P=0.4 20.1 (0- 73.6) 45 12 28 58
taurodeoxycholate cholecystectomy Weighted median 1.2 (0.76- 2) P=0.39 20.1 (0- 73.6) 45 12 28 NA
Results from Univariable MRPRESSO of Taurodeoxycholic acid & Cholecystectomy - model2
Exposure MR.Analysis Causal.Estimate Sd T.stat P.value
beta.exposure Raw -0.05 0.18 -0.30 0.77
beta.exposure Outlier-corrected -0.02 0.16 -0.12 0.90