5th September 2019
Erik Bao
README file for g-chromVar results generated by the Blood-Cell Consortium (BCX2)


All variants from the (a) trans-ethnic meta-analysis and (b) GWAS of individual sub-ancestries which have fine-mapped PP > 0.001 and co-localize in a strong hematopoietic ATAC peak (i.e., a peak with ATAC counts in the >80th percentile of all peaks within 1 or more hematopoietic cell types). var, variant; trait, GWAS trait; PP, fine-mapped posterior probability; ancestry, GWAS population; B, B cell; CD4, CD4+ T cell; CD8, CD8+ T cell; CLP, common lymphoid progenitor; CMP, common myeloid progenitor; ery, erythroid; GMP, granulocyte–macrophage progenitor; HSC, hematopoietic stem cell; LMPP, lymphoid-primed multipotent progenitor; mDC, myeloid dendritic cell; mega, megakaryocyte; MEP, megakaryocyte–erythroid progenitor; Mono, monocyte; MPP, multipotent progenitor; NK, natural killer cell; pDC, plasmacytoid dendritic cell. Values under each cell type column indicate the log2(counts per million + 1) of the variant-containing ATAC peak for the specified cell type.